Wall clock time and date at job start Tue Mar 31 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47090 * 157.56166 * 3 2 1 5 5 C 1.37101 * 119.99970 * 264.23214 * 4 3 2 6 6 H 1.08002 * 119.99578 * 197.71970 * 5 4 3 7 7 C 1.38942 * 119.99821 * 17.71886 * 5 4 3 8 8 N 1.31418 * 120.00107 * 21.40186 * 7 5 4 9 9 Si 1.86804 * 119.99865 * 201.39820 * 7 5 4 10 10 H 1.48502 * 109.46932 * 90.00363 * 9 7 5 11 11 H 1.48508 * 109.47059 * 209.99926 * 9 7 5 12 12 H 1.48496 * 109.46936 * 330.00163 * 9 7 5 13 13 C 1.34777 * 120.00148 * 84.22989 * 4 3 2 14 14 O 1.21296 * 120.00005 * 180.02562 * 13 4 3 15 15 C 1.50703 * 120.00145 * 359.97438 * 13 4 3 16 16 C 1.52998 * 109.47276 * 180.02562 * 15 13 4 17 17 H 1.08992 * 109.47041 * 55.00042 * 16 15 13 18 18 O 1.42908 * 109.46956 * 295.00016 * 16 15 13 19 19 C 1.50698 * 109.46858 * 175.00455 * 16 15 13 20 20 C 1.38271 * 119.98672 * 264.99712 * 19 16 15 21 21 C 1.38216 * 120.05358 * 179.97438 * 20 19 16 22 22 C 1.38220 * 120.02433 * 359.97438 * 21 20 19 23 23 C 1.38432 * 119.97719 * 0.02562 * 22 21 20 24 24 F 1.35095 * 120.02859 * 180.02562 * 23 22 21 25 25 C 1.38177 * 119.99281 * 84.98159 * 19 16 15 26 26 H 1.08996 * 109.46922 * 37.55653 * 3 2 1 27 27 H 1.09005 * 109.47050 * 277.55907 * 3 2 1 28 28 H 0.97004 * 119.99428 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46707 * 60.00108 * 15 13 4 30 30 H 1.08998 * 109.46838 * 300.00502 * 15 13 4 31 31 H 0.96697 * 114.00048 * 300.00177 * 18 16 15 32 32 H 1.08000 * 119.96953 * 359.70507 * 20 19 16 33 33 H 1.07997 * 119.98719 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.01084 * 179.97438 * 22 21 20 35 35 H 1.08006 * 120.00885 * 0.03693 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.2775 -0.5272 5 6 3.4367 1.3873 -1.8506 6 1 4.0527 2.2098 -2.1830 7 6 2.9898 0.4405 -2.7640 8 7 1.9367 -0.2949 -2.4860 9 14 3.8858 0.2130 -4.3872 10 1 4.9510 -0.8090 -4.2256 11 1 2.9232 -0.2354 -5.4254 12 1 4.4954 1.5022 -4.8010 13 6 3.2093 2.3442 0.2887 14 8 3.6127 3.4015 -0.1479 15 6 2.8339 2.2237 1.7433 16 6 3.0540 3.5680 2.4399 17 1 2.5023 4.3455 1.9117 18 8 4.4475 3.8850 2.4340 19 6 2.5643 3.4826 3.8625 20 6 1.2854 3.9019 4.1795 21 6 0.8346 3.8237 5.4837 22 6 1.6619 3.3256 6.4727 23 6 2.9425 2.9055 6.1566 24 9 3.7517 2.4180 7.1223 25 6 3.3932 2.9850 4.8497 26 1 2.9717 -0.8138 -0.6264 27 1 2.9714 -0.1344 1.0188 28 1 1.6246 -0.9556 -3.1239 29 1 3.4545 1.4627 2.2168 30 1 1.7848 1.9397 1.8254 31 1 5.0007 3.2345 2.8878 32 1 0.6398 4.2949 3.4081 33 1 -0.1643 4.1520 5.7302 34 1 1.3096 3.2650 7.4918 35 1 4.3923 2.6578 4.6020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271781398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:40 Heat of formation + Delta-G solvation = -85.636189 kcal Electronic energy + Delta-G solvation = -22704.333499 eV Core-core repulsion = 19002.744764 eV Total energy + Delta-G solvation = -3701.588735 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87446 -41.05311 -40.06555 -37.93819 -37.28583 -36.10136 -33.82025 -32.96245 -31.59827 -30.71674 -29.09264 -26.96235 -25.20082 -23.61741 -22.37299 -20.89110 -19.72826 -19.05699 -18.11500 -17.84610 -17.52404 -17.10249 -16.97646 -16.56382 -16.41996 -16.14870 -15.77250 -15.06444 -14.99825 -14.73325 -14.65488 -14.35491 -14.05567 -13.79059 -13.40757 -13.40156 -13.10844 -12.94035 -12.83913 -12.73521 -12.35909 -12.30236 -12.15583 -12.10857 -11.95304 -11.13540 -11.06625 -10.39179 -9.93496 -9.88236 -9.65125 -8.38798 -5.93732 0.14508 0.23470 1.41098 1.49130 1.58764 1.84980 2.09123 2.26792 2.36773 2.57127 3.00534 3.04764 3.26575 3.53161 3.61909 3.64682 3.80271 3.90529 4.07581 4.17159 4.21649 4.36930 4.42695 4.61616 4.69902 4.83618 4.87039 4.92902 5.09225 5.15513 5.35209 5.50847 5.52584 5.91943 6.06554 6.43247 6.86586 7.01672 7.16542 7.39419 7.98190 8.65028 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024851 B = 0.003974 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.459660 B = 7043.409100 C = 7489.736670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.257 3.743 3 C 0.222 3.778 4 N -0.459 5.459 5 C -0.339 4.339 6 H 0.080 0.920 7 C 0.006 3.994 8 N -0.894 5.894 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.287 1.287 12 H -0.279 1.279 13 C 0.453 3.547 14 O -0.603 6.603 15 C -0.153 4.153 16 C 0.176 3.824 17 H 0.091 0.909 18 O -0.555 6.555 19 C -0.089 4.089 20 C -0.130 4.130 21 C -0.085 4.085 22 C -0.155 4.155 23 C 0.084 3.916 24 F -0.146 7.146 25 C -0.148 4.148 26 H 0.122 0.878 27 H 0.139 0.861 28 H 0.273 0.727 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.381 0.619 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 0.598 16.929 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.060 4.060 3 C 0.095 3.905 4 N -0.180 5.180 5 C -0.466 4.466 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.533 5.533 9 Si 0.809 3.191 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.204 1.204 13 C 0.244 3.756 14 O -0.487 6.487 15 C -0.193 4.193 16 C 0.116 3.884 17 H 0.108 0.892 18 O -0.362 6.362 19 C -0.090 4.090 20 C -0.148 4.148 21 C -0.102 4.102 22 C -0.173 4.173 23 C 0.065 3.935 24 F -0.125 7.125 25 C -0.167 4.167 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.230 0.770 32 H 0.154 0.846 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.044 1.465 16.312 16.378 hybrid contribution 0.803 -0.710 -0.899 1.399 sum 0.759 0.755 15.412 15.450 Atomic orbital electron populations 1.80900 1.14736 1.09662 1.13543 1.29801 0.95843 0.91483 0.88893 1.19057 0.80118 0.89395 1.01946 1.43816 1.57183 1.08365 1.08647 1.19589 1.30727 1.12497 0.83783 0.90207 1.25828 0.95189 0.96545 1.02066 1.69939 1.20386 1.24352 1.38634 0.85066 0.78176 0.78590 0.77316 1.18427 1.21334 1.20412 1.20866 0.82281 0.83154 0.89343 1.90570 1.50882 1.29018 1.78238 1.22355 1.04434 1.00425 0.92115 1.20296 0.82840 0.95601 0.89691 0.89151 1.86743 1.16926 1.52130 1.80413 1.20354 0.95005 0.98315 0.95329 1.21352 0.95318 1.00101 0.98011 1.21306 1.00735 0.96856 0.91346 1.21463 0.92378 1.01206 1.02262 1.17807 0.89899 1.00168 0.85587 1.91486 1.72806 1.85752 1.62424 1.20987 1.01895 1.02665 0.91139 0.86016 0.84414 0.91673 0.85727 0.88612 0.76955 0.84641 0.82135 0.82658 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.05 18.54 20.01 0.37 -22.68 16 2 C 0.26 10.67 12.95 89.44 1.16 11.83 16 3 C 0.22 8.04 4.91 84.58 0.42 8.45 16 4 N -0.46 -20.51 2.60 -645.42 -1.68 -22.19 16 5 C -0.34 -17.37 9.32 84.04 0.78 -16.58 16 6 H 0.08 4.48 7.39 -2.91 -0.02 4.46 16 7 C 0.01 0.27 4.87 84.92 0.41 0.68 16 8 N -0.89 -44.08 9.48 21.66 0.21 -43.88 16 9 Si 0.98 39.88 29.60 68.60 2.03 41.91 16 10 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 11 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 13 C 0.45 19.46 7.45 87.66 0.65 20.11 16 14 O -0.60 -31.45 15.07 10.69 0.16 -31.29 16 15 C -0.15 -4.54 3.97 29.85 0.12 -4.43 16 16 C 0.18 5.05 2.76 29.85 0.08 5.13 16 17 H 0.09 3.04 7.86 -2.39 -0.02 3.02 16 18 O -0.56 -16.91 12.37 -135.21 -1.67 -18.58 16 19 C -0.09 -2.04 5.00 -19.87 -0.10 -2.14 16 20 C -0.13 -2.66 9.68 22.27 0.22 -2.44 16 21 C -0.08 -1.38 10.04 22.26 0.22 -1.16 16 22 C -0.15 -2.59 10.03 22.31 0.22 -2.37 16 23 C 0.08 1.70 7.30 22.37 0.16 1.86 16 24 F -0.15 -3.10 17.27 44.97 0.78 -2.32 16 25 C -0.15 -3.01 9.31 22.31 0.21 -2.81 16 26 H 0.12 4.61 6.46 -2.39 -0.02 4.60 16 27 H 0.14 3.39 6.68 -2.38 -0.02 3.38 16 28 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 29 H 0.12 2.73 7.41 -2.38 -0.02 2.71 16 30 H 0.10 2.78 7.51 -2.39 -0.02 2.76 16 31 H 0.38 8.07 7.39 -74.06 -0.55 7.53 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.15 2.45 6.61 -2.91 -0.02 2.44 16 Total: -1.00 -70.04 313.63 5.36 -64.68 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.61 Total: 18.21 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 4.56 Total: 16.15 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -1.10 Total: -88.75 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -1.51 Total: -49.87 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -70.04 5.36 -64.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271781398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.955 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds