Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47461 * 2 1 4 4 C 1.46909 * 110.99720 * 288.05056 * 3 2 1 5 5 C 1.50703 * 109.47172 * 160.36109 * 4 3 2 6 6 H 1.07997 * 119.99779 * 4.90098 * 5 4 3 7 7 C 1.37872 * 119.99812 * 184.89882 * 5 4 3 8 8 N 1.31517 * 119.99985 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00182 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46985 * 90.00175 * 9 7 5 11 11 H 1.48501 * 109.46904 * 210.00025 * 9 7 5 12 12 H 1.48493 * 109.46784 * 329.99760 * 9 7 5 13 13 C 1.46899 * 111.00275 * 164.09825 * 3 2 1 14 14 C 1.50697 * 109.47117 * 293.95264 * 13 3 2 15 15 C 1.33688 * 125.86875 * 89.71558 * 14 13 3 16 16 N 1.31326 * 115.87220 * 179.84596 * 15 14 13 17 17 C 1.30486 * 116.97490 * 0.45643 * 16 15 14 18 18 C 1.47101 * 125.48597 * 179.79057 * 17 16 15 19 19 C 1.36256 * 125.96196 * 359.96217 * 18 17 16 20 20 C 1.40784 * 106.72800 * 179.97438 * 19 18 17 21 21 C 1.34825 * 107.06870 * 359.97438 * 20 19 18 22 22 O 1.34278 * 108.72313 * 359.77148 * 21 20 19 23 23 S 1.76178 * 109.02927 * 359.75261 * 17 16 15 24 24 H 1.08999 * 109.46846 * 59.48823 * 1 2 3 25 25 H 1.08994 * 109.47647 * 179.49112 * 1 2 3 26 26 H 1.09001 * 109.47078 * 299.49018 * 1 2 3 27 27 H 1.08998 * 109.47163 * 239.98964 * 2 1 3 28 28 H 1.09003 * 109.46522 * 119.99332 * 2 1 3 29 29 H 1.08991 * 109.47116 * 280.36638 * 4 3 2 30 30 H 1.08997 * 109.46792 * 40.36543 * 4 3 2 31 31 H 0.96993 * 120.00363 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46964 * 53.95242 * 13 3 2 33 33 H 1.09002 * 109.46989 * 173.94692 * 13 3 2 34 34 H 1.08000 * 122.05896 * 0.02562 * 15 14 13 35 35 H 1.08003 * 126.63918 * 359.95819 * 19 18 17 36 36 H 1.07997 * 126.46528 * 180.02562 * 20 19 18 37 37 H 1.08005 * 125.63448 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7945 2.0229 -1.3040 5 6 1.8461 3.5207 -1.1461 6 1 2.1059 3.9544 -0.1918 7 6 1.5615 4.3373 -2.2199 8 7 1.6070 5.6445 -2.0822 9 14 1.1114 3.5871 -3.8704 10 1 -0.3596 3.3970 -3.9430 11 1 1.5478 4.4945 -4.9620 12 1 1.7883 2.2737 -4.0181 13 6 3.4387 1.4416 0.3757 14 6 3.5965 1.0056 1.8096 15 6 3.8003 -0.2471 2.2295 16 7 3.9132 -0.4050 3.5284 17 6 3.8063 0.6659 4.2662 18 6 3.8975 0.7043 5.7339 19 6 4.1061 -0.3661 6.5509 20 6 4.1222 0.1275 7.8693 21 6 3.9257 1.4594 7.7956 22 8 3.7957 1.8052 6.5046 23 16 3.5362 2.0587 3.2216 24 1 -0.3633 0.5218 -0.8854 25 1 -0.3634 -1.0275 -0.0091 26 1 -0.3633 0.5059 0.8945 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.5680 1.7043 -2.0027 30 1 0.8166 1.7314 -1.6870 31 1 1.4065 6.2190 -2.8375 32 1 4.0126 0.7780 -0.2710 33 1 3.8036 2.4626 0.2641 34 1 3.8709 -1.0776 1.5427 35 1 4.2340 -1.3943 6.2461 36 1 4.2658 -0.4513 8.7696 37 1 3.8834 2.1366 8.6359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278532087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = 71.786675 kcal Electronic energy + Delta-G solvation = -20186.302843 eV Core-core repulsion = 17057.753652 eV Total energy + Delta-G solvation = -3128.549191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.69387 -39.48029 -37.18546 -33.30215 -32.69518 -32.06897 -30.59050 -29.48413 -27.18893 -25.60164 -23.71812 -22.43498 -21.98565 -21.56841 -19.95787 -19.43697 -17.89071 -17.15775 -16.87838 -16.31723 -15.55591 -15.25020 -14.83936 -14.19793 -14.16295 -13.77799 -13.58744 -13.36098 -13.07892 -12.90469 -12.67056 -12.41509 -12.21949 -11.69523 -11.50071 -11.36742 -10.90266 -10.81266 -10.52716 -10.23182 -10.21109 -9.93583 -9.66544 -9.60672 -9.34689 -9.06499 -8.60456 -8.01457 -7.50863 -6.09318 -4.07007 0.32792 1.35281 1.70768 1.89011 2.40328 2.47549 3.08149 3.24600 3.32686 3.33422 4.26307 4.37525 4.68038 4.79503 4.83594 4.94130 5.15065 5.23209 5.39584 5.51352 5.57418 5.67402 5.68924 5.80004 5.92769 5.95567 6.07758 6.15758 6.25106 6.32084 6.39558 6.64994 6.73851 6.81711 6.82299 7.54705 7.69631 7.79341 7.88788 8.59411 8.99147 9.51958 11.03797 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.003628 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.669507 B = 7716.565013 C = 8312.925766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.522 5.522 4 C 0.162 3.838 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.129 3.871 14 C -0.170 4.170 15 C 0.022 3.978 16 N -0.447 5.447 17 C 0.098 3.902 18 C 0.051 3.949 19 C -0.149 4.149 20 C -0.216 4.216 21 C -0.022 4.022 22 O -0.168 6.168 23 S 0.161 5.839 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.066 0.934 29 H -0.009 1.009 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.175 0.825 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -11.748 15.328 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 N -0.246 5.246 4 C 0.036 3.964 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.001 4.001 14 C -0.292 4.292 15 C -0.131 4.131 16 N -0.163 5.163 17 C -0.175 4.175 18 C -0.002 4.002 19 C -0.173 4.173 20 C -0.236 4.236 21 C -0.092 4.092 22 O -0.063 6.063 23 S 0.418 5.582 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.008 0.992 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.191 0.809 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.532 -10.385 15.795 19.439 hybrid contribution 0.182 -1.542 -2.004 2.535 sum 4.714 -11.927 13.791 18.833 Atomic orbital electron populations 1.21735 0.95248 1.00203 1.02906 1.22160 0.96336 0.90521 0.99646 1.62018 1.14390 1.14809 1.33426 1.20245 0.95694 0.95994 0.84442 1.21007 1.46949 0.88107 0.98772 0.90213 1.24887 0.95104 0.94701 0.98510 1.69886 1.49467 1.02845 1.31492 0.86898 0.79265 0.79458 0.84349 1.20118 1.21158 1.19321 1.20476 0.91003 1.02666 0.85951 1.26229 1.06028 0.95864 1.01109 1.21442 1.04980 0.96536 0.90100 1.66434 1.15554 1.29282 1.05006 1.23812 1.07987 0.92597 0.93062 1.18662 1.09065 0.84973 0.87548 1.21862 1.04039 0.99744 0.91631 1.21821 1.08545 0.94839 0.98366 1.24237 1.04520 0.96922 0.83519 1.84082 1.70695 1.34104 1.17409 1.85361 1.64796 1.10991 0.97066 0.92312 0.93332 0.92156 0.95716 0.91598 0.99163 0.95081 0.92611 0.93266 0.87963 0.80857 0.82501 0.82827 0.77417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.98 37.16 0.37 -1.93 16 2 C 0.04 0.70 5.54 -3.83 -0.02 0.68 16 3 N -0.52 -10.46 4.37 -237.52 -1.04 -11.50 16 4 C 0.16 3.77 3.65 -4.97 -0.02 3.75 16 5 C -0.51 -14.06 9.17 -34.44 -0.32 -14.38 16 6 H 0.08 2.41 7.89 -52.49 -0.41 1.99 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 9 Si 0.87 21.02 27.37 -169.99 -4.65 16.37 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.20 6.68 56.52 0.38 -5.82 16 13 C 0.13 2.31 5.32 -4.98 -0.03 2.29 16 14 C -0.17 -2.74 5.55 -35.91 -0.20 -2.94 16 15 C 0.02 0.33 9.51 -19.36 -0.18 0.15 16 16 N -0.45 -6.89 10.52 -11.54 -0.12 -7.01 16 17 C 0.10 1.50 7.46 -14.53 -0.11 1.39 16 18 C 0.05 0.69 7.22 -36.70 -0.26 0.43 16 19 C -0.15 -1.73 10.80 -39.33 -0.42 -2.15 16 20 C -0.22 -1.96 10.88 -39.83 -0.43 -2.39 16 21 C -0.02 -0.20 12.08 29.52 0.36 0.16 16 22 O -0.17 -2.11 10.68 4.48 0.05 -2.07 16 23 S 0.16 2.57 23.42 -107.50 -2.52 0.05 16 24 H 0.06 1.02 6.52 -51.93 -0.34 0.68 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 28 H 0.07 1.02 5.42 -51.93 -0.28 0.73 16 29 H -0.01 -0.22 7.40 -51.93 -0.38 -0.60 16 30 H 0.03 0.73 5.39 -51.93 -0.28 0.45 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.10 2.03 7.32 -51.93 -0.38 1.65 16 34 H 0.17 2.17 7.82 -52.49 -0.41 1.76 16 35 H 0.16 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.21 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -31.24 326.56 -8.56 -39.79 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.60 Total: -1.18 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.37 Total: -13.09 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.39 Total: -44.80 kcal Atomic # 8 Polarization: -2.11 SS G_CDS: 0.05 Total: -2.07 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.65 Total: 16.37 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.52 Total: 0.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.24 -8.56 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278532087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.581 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds