Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47461 * 2 1 4 4 C 1.46909 * 110.99720 * 288.05056 * 3 2 1 5 5 C 1.50703 * 109.47172 * 160.36109 * 4 3 2 6 6 H 1.07997 * 119.99779 * 4.90098 * 5 4 3 7 7 C 1.37872 * 119.99812 * 184.89882 * 5 4 3 8 8 N 1.31517 * 119.99985 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00182 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46985 * 90.00175 * 9 7 5 11 11 H 1.48501 * 109.46904 * 210.00025 * 9 7 5 12 12 H 1.48493 * 109.46784 * 329.99760 * 9 7 5 13 13 C 1.46899 * 111.00275 * 164.09825 * 3 2 1 14 14 C 1.50697 * 109.47117 * 293.95264 * 13 3 2 15 15 C 1.33688 * 125.86875 * 89.71558 * 14 13 3 16 16 N 1.31326 * 115.87220 * 179.84596 * 15 14 13 17 17 C 1.30486 * 116.97490 * 0.45643 * 16 15 14 18 18 C 1.47101 * 125.48597 * 179.79057 * 17 16 15 19 19 C 1.36256 * 125.96196 * 359.96217 * 18 17 16 20 20 C 1.40784 * 106.72800 * 179.97438 * 19 18 17 21 21 C 1.34825 * 107.06870 * 359.97438 * 20 19 18 22 22 O 1.34278 * 108.72313 * 359.77148 * 21 20 19 23 23 S 1.76178 * 109.02927 * 359.75261 * 17 16 15 24 24 H 1.08999 * 109.46846 * 59.48823 * 1 2 3 25 25 H 1.08994 * 109.47647 * 179.49112 * 1 2 3 26 26 H 1.09001 * 109.47078 * 299.49018 * 1 2 3 27 27 H 1.08998 * 109.47163 * 239.98964 * 2 1 3 28 28 H 1.09003 * 109.46522 * 119.99332 * 2 1 3 29 29 H 1.08991 * 109.47116 * 280.36638 * 4 3 2 30 30 H 1.08997 * 109.46792 * 40.36543 * 4 3 2 31 31 H 0.96993 * 120.00363 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46964 * 53.95242 * 13 3 2 33 33 H 1.09002 * 109.46989 * 173.94692 * 13 3 2 34 34 H 1.08000 * 122.05896 * 0.02562 * 15 14 13 35 35 H 1.08003 * 126.63918 * 359.95819 * 19 18 17 36 36 H 1.07997 * 126.46528 * 180.02562 * 20 19 18 37 37 H 1.08005 * 125.63448 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7945 2.0229 -1.3040 5 6 1.8461 3.5207 -1.1461 6 1 2.1059 3.9544 -0.1918 7 6 1.5615 4.3373 -2.2199 8 7 1.6070 5.6445 -2.0822 9 14 1.1114 3.5871 -3.8704 10 1 -0.3596 3.3970 -3.9430 11 1 1.5478 4.4945 -4.9620 12 1 1.7883 2.2737 -4.0181 13 6 3.4387 1.4416 0.3757 14 6 3.5965 1.0056 1.8096 15 6 3.8003 -0.2471 2.2295 16 7 3.9132 -0.4050 3.5284 17 6 3.8063 0.6659 4.2662 18 6 3.8975 0.7043 5.7339 19 6 4.1061 -0.3661 6.5509 20 6 4.1222 0.1275 7.8693 21 6 3.9257 1.4594 7.7956 22 8 3.7957 1.8052 6.5046 23 16 3.5362 2.0587 3.2216 24 1 -0.3633 0.5218 -0.8854 25 1 -0.3634 -1.0275 -0.0091 26 1 -0.3633 0.5059 0.8945 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.5680 1.7043 -2.0027 30 1 0.8166 1.7314 -1.6870 31 1 1.4065 6.2190 -2.8375 32 1 4.0126 0.7780 -0.2710 33 1 3.8036 2.4626 0.2641 34 1 3.8709 -1.0776 1.5427 35 1 4.2340 -1.3943 6.2461 36 1 4.2658 -0.4513 8.7696 37 1 3.8834 2.1366 8.6359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278532087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = 50.961257 kcal Electronic energy + Delta-G solvation = -20187.205901 eV Core-core repulsion = 17057.753652 eV Total energy + Delta-G solvation = -3129.452249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.54653 -40.68504 -38.68446 -34.78567 -34.16328 -33.25913 -31.88803 -30.89979 -28.74964 -26.84172 -25.00476 -24.17513 -22.93136 -22.46629 -21.51663 -20.45268 -19.13229 -18.94355 -18.10173 -17.24291 -16.88811 -16.66031 -16.18948 -15.88729 -15.37821 -15.11385 -15.01810 -14.58744 -14.44204 -13.93370 -13.85644 -13.68244 -13.53348 -13.23515 -12.98661 -12.76685 -12.55106 -12.28251 -12.08014 -11.91526 -11.61219 -11.52650 -11.10127 -10.82959 -10.76860 -10.60891 -10.30939 -9.13002 -8.95317 -8.27239 -6.30353 -0.80493 0.15047 0.68886 0.77398 1.35582 1.36385 1.46969 1.55841 1.61020 1.96742 2.34659 3.04769 3.22469 3.35908 3.81967 3.86679 4.03065 4.09673 4.18402 4.19128 4.38091 4.57062 4.64817 4.69459 4.71963 4.86993 4.92533 4.96895 5.01582 5.01778 5.10170 5.16184 5.33298 5.50511 5.57953 5.97277 5.99113 6.30220 6.51797 6.63123 6.75553 7.32866 8.89661 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.003628 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.669507 B = 7716.565013 C = 8312.925766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.542 5.542 4 C 0.173 3.827 5 C -0.514 4.514 6 H 0.034 0.966 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.247 1.247 13 C 0.138 3.862 14 C -0.189 4.189 15 C 0.040 3.960 16 N -0.461 5.461 17 C 0.120 3.880 18 C 0.001 3.999 19 C -0.135 4.135 20 C -0.221 4.221 21 C -0.005 4.005 22 O -0.188 6.188 23 S 0.112 5.888 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.081 0.919 29 H -0.005 1.005 30 H 0.036 0.964 31 H 0.266 0.734 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.202 0.798 35 H 0.164 0.836 36 H 0.188 0.812 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -14.712 16.314 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 N -0.267 5.267 4 C 0.046 3.954 5 C -0.552 4.552 6 H 0.052 0.948 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.171 1.171 13 C 0.008 3.992 14 C -0.311 4.311 15 C -0.113 4.113 16 N -0.176 5.176 17 C -0.153 4.153 18 C -0.052 4.052 19 C -0.160 4.160 20 C -0.240 4.240 21 C -0.074 4.074 22 O -0.084 6.084 23 S 0.370 5.630 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.013 0.987 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.218 0.782 35 H 0.181 0.819 36 H 0.205 0.795 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.544 -13.378 16.780 21.936 hybrid contribution 0.235 -0.628 -1.968 2.079 sum 4.779 -14.006 14.811 20.937 Atomic orbital electron populations 1.21738 0.94820 1.01901 1.01440 1.22249 0.96668 0.88566 1.01060 1.61866 1.16074 1.17214 1.31593 1.19972 0.95909 0.93175 0.86307 1.21251 1.46083 0.90908 0.96957 0.94809 1.25835 0.95084 0.94989 1.02999 1.70055 1.51287 1.04673 1.32953 0.85741 0.79411 0.79293 0.78655 1.19164 1.20944 1.17093 1.20269 0.90062 1.01287 0.87595 1.25903 1.09123 0.96269 0.99807 1.21790 1.02682 0.96511 0.90294 1.66534 1.16968 1.28962 1.05176 1.24180 1.05525 0.91603 0.93977 1.18706 1.13201 0.86202 0.87069 1.22189 1.01566 0.99527 0.92670 1.22223 1.08323 0.95130 0.98314 1.25273 1.01180 0.98003 0.82993 1.84088 1.71179 1.34290 1.18888 1.85486 1.66184 1.12840 0.98522 0.93805 0.90043 0.93546 0.94175 0.90039 0.98739 0.94575 0.92504 0.91225 0.91339 0.78187 0.81862 0.79514 0.73148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.98 71.98 0.72 -3.58 16 2 C 0.04 1.33 5.54 86.30 0.48 1.81 16 3 N -0.54 -21.82 4.37 -905.38 -3.96 -25.78 16 4 C 0.17 8.04 3.65 85.56 0.31 8.35 16 5 C -0.51 -29.44 9.17 25.60 0.23 -29.20 16 6 H 0.03 2.18 7.89 -2.91 -0.02 2.16 16 7 C 0.01 0.47 5.47 84.65 0.46 0.93 16 8 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 9 Si 0.95 43.46 27.37 68.60 1.88 45.34 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.25 -10.45 6.68 99.48 0.67 -9.78 16 13 C 0.14 5.02 5.32 85.56 0.45 5.48 16 14 C -0.19 -6.19 5.55 24.65 0.14 -6.05 16 15 C 0.04 1.13 9.51 83.73 0.80 1.93 16 16 N -0.46 -13.80 10.52 -190.42 -2.00 -15.80 16 17 C 0.12 3.67 7.46 87.22 0.65 4.32 16 18 C 0.00 0.02 7.22 24.14 0.17 0.20 16 19 C -0.14 -2.87 10.80 22.43 0.24 -2.63 16 20 C -0.22 -3.25 10.88 22.11 0.24 -3.01 16 21 C -0.01 -0.08 12.08 67.04 0.81 0.73 16 22 O -0.19 -4.56 10.68 -6.89 -0.07 -4.64 16 23 S 0.11 3.77 23.42 -56.49 -1.32 2.45 16 24 H 0.04 1.45 6.52 -2.39 -0.02 1.43 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.16 8.05 -2.39 -0.02 1.14 16 28 H 0.08 2.32 5.42 -2.39 -0.01 2.31 16 29 H -0.01 -0.23 7.40 -2.39 -0.02 -0.25 16 30 H 0.04 1.65 5.39 -2.39 -0.01 1.64 16 31 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 32 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 33 H 0.07 2.92 7.32 -2.39 -0.02 2.90 16 34 H 0.20 4.45 7.82 -2.91 -0.02 4.43 16 35 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.25 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -71.09 326.56 1.57 -69.52 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.04 Total: 8.73 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.71 Total: -20.74 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -5.66 Total: -100.68 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.07 Total: -4.64 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.32 Total: 2.45 kcal Total: -71.09 1.57 -69.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278532087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.485 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds