Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 H 1.08993 * 109.47409 * 304.90066 * 3 2 1 5 5 C 1.50701 * 109.46914 * 184.89927 * 3 2 1 6 6 H 1.08006 * 119.99831 * 245.45321 * 5 3 2 7 7 C 1.37874 * 120.00105 * 65.45231 * 5 3 2 8 8 N 1.31514 * 120.00071 * 9.47270 * 7 5 3 9 9 Si 1.86801 * 119.99959 * 189.46878 * 7 5 3 10 10 H 1.48498 * 109.47222 * 84.99561 * 9 7 5 11 11 H 1.48500 * 109.46868 * 204.99388 * 9 7 5 12 12 H 1.48494 * 109.47130 * 324.99171 * 9 7 5 13 13 N 1.46505 * 109.47410 * 64.89886 * 3 2 1 14 14 C 1.34771 * 119.99992 * 275.00138 * 13 3 2 15 15 O 1.21541 * 119.99988 * 359.72281 * 14 13 3 16 16 C 1.47953 * 119.99822 * 179.97438 * 14 13 3 17 17 C 1.39605 * 119.99475 * 359.45255 * 16 14 13 18 18 C 1.37744 * 120.01037 * 179.76417 * 17 16 14 19 19 C 1.39677 * 119.99091 * 0.50962 * 18 17 16 20 20 C 1.47738 * 120.01054 * 179.72329 * 19 18 17 21 21 N 1.34783 * 120.00026 * 35.01900 * 20 19 18 22 22 S 1.71196 * 120.00018 * 215.02078 * 20 19 18 23 23 C 1.39673 * 119.98421 * 359.73982 * 19 18 17 24 24 C 1.37749 * 119.99008 * 0.02562 * 23 19 18 25 25 H 1.08999 * 109.47413 * 60.00097 * 1 2 3 26 26 H 1.09004 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47471 * 299.99926 * 1 2 3 28 28 H 1.08994 * 109.46828 * 239.99699 * 2 1 3 29 29 H 1.09002 * 109.46521 * 119.99820 * 2 1 3 30 30 H 0.96996 * 120.00459 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00020 * 94.99410 * 13 3 2 32 32 H 1.08004 * 119.99729 * 359.97438 * 17 16 14 33 33 H 1.07999 * 120.01117 * 180.24493 * 18 17 16 34 34 H 0.97000 * 119.99659 * 359.97438 * 21 20 19 35 35 H 0.96999 * 120.00448 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.00592 * 179.97438 * 23 19 18 37 37 H 1.08006 * 119.99452 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4441 -0.1213 6 1 4.1493 1.8089 0.6940 7 6 4.1412 0.9800 -1.2731 8 7 3.4097 0.7114 -2.3325 9 14 5.9919 0.7326 -1.3288 10 1 6.3290 -0.6068 -0.7833 11 1 6.4619 0.8273 -2.7343 12 1 6.6562 1.7808 -0.5131 13 7 1.6503 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3399 2.6368 0.4259 16 6 0.0392 3.3270 2.6269 17 6 0.9246 3.3541 3.7060 18 6 0.5603 3.9743 4.8807 19 6 -0.6992 4.5670 4.9958 20 6 -1.0927 5.2270 6.2576 21 7 -0.1719 5.8851 6.9896 22 16 -2.7182 5.1559 6.7902 23 6 -1.5868 4.5352 3.9179 24 6 -1.2199 3.9189 2.7418 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8312 0.3852 -3.1430 31 1 2.2686 2.1243 1.9978 32 1 1.8967 2.8916 3.6186 33 1 1.2468 3.9987 5.7141 34 1 0.7491 5.9251 6.6880 35 1 -0.4301 6.3182 7.8182 36 1 -2.5609 4.9929 4.0067 37 1 -1.9064 3.8939 1.9084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280871441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = -27.818116 kcal Electronic energy + Delta-G solvation = -20362.366780 eV Core-core repulsion = 17229.498400 eV Total energy + Delta-G solvation = -3132.868379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.35285 -39.93796 -37.62223 -36.87964 -34.41579 -33.33532 -32.11081 -32.03203 -29.03801 -26.99530 -25.01506 -24.05780 -23.41667 -21.96507 -21.19049 -19.76439 -19.46744 -18.41459 -17.66747 -17.33080 -16.58411 -16.47550 -16.29582 -15.70270 -15.63345 -14.89998 -14.60822 -14.58005 -14.46911 -13.94393 -13.52169 -13.48089 -13.26477 -13.15462 -12.90559 -12.60390 -12.42371 -12.19747 -12.08449 -12.07642 -11.62639 -11.09082 -10.81038 -10.52111 -10.25456 -10.15076 -9.67705 -9.41605 -8.98531 -8.18149 -6.31372 -1.09734 0.15955 0.25287 0.86141 1.46780 1.47977 1.56998 1.85204 2.24420 2.33735 2.55100 2.76955 3.08071 3.14320 3.69195 3.80401 3.87965 4.16951 4.29087 4.46657 4.53453 4.55590 4.71589 4.87816 5.01064 5.05811 5.11891 5.21551 5.30312 5.41179 5.41832 5.50991 5.59929 5.62918 5.75309 5.90822 5.98741 6.06841 6.76857 6.92606 7.33560 7.51414 8.90590 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027540 B = 0.003286 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.461780 B = 8518.507713 C = 9232.561713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.077 0.923 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.261 1.261 13 N -0.693 5.693 14 C 0.534 3.466 15 O -0.580 6.580 16 C -0.102 4.102 17 C -0.088 4.088 18 C -0.068 4.068 19 C -0.101 4.101 20 C 0.438 3.562 21 N -0.719 5.719 22 S -0.667 6.667 23 C -0.056 4.056 24 C -0.080 4.080 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.159 0.841 33 H 0.179 0.821 34 H 0.428 0.572 35 H 0.435 0.565 36 H 0.146 0.854 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 8.573 18.830 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.095 0.905 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.185 1.185 13 N -0.342 5.342 14 C 0.321 3.679 15 O -0.462 6.462 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.106 4.106 20 C 0.176 3.824 21 N -0.250 5.250 22 S -0.533 6.533 23 C -0.077 4.077 24 C -0.099 4.099 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.241 0.759 32 H 0.177 0.823 33 H 0.197 0.803 34 H 0.264 0.736 35 H 0.271 0.729 36 H 0.164 0.836 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.847 8.526 18.431 20.325 hybrid contribution 1.787 -0.090 -0.604 1.889 sum 0.940 8.436 17.827 19.745 Atomic orbital electron populations 1.21703 0.96864 0.99413 1.00426 1.21719 0.93924 0.99045 1.00556 1.18426 0.93923 0.89030 0.81361 0.97729 1.21536 0.91136 1.43778 1.02240 0.90495 1.25768 1.03099 0.94825 0.94607 1.70132 1.37831 1.44719 1.02805 0.85443 0.79310 0.79089 0.77020 1.19649 1.21787 1.18471 1.46172 1.15020 1.55245 1.17777 1.18806 0.82288 0.78902 0.87895 1.90747 1.52715 1.61186 1.41539 1.20336 0.96452 0.99898 0.93978 1.21525 0.99855 0.97847 0.91416 1.21515 0.93705 0.95276 0.98464 1.19204 0.96251 1.03213 0.91925 1.23759 0.92672 0.79002 0.86955 1.43422 1.12126 1.45166 1.24252 1.93717 1.05386 1.75587 1.78596 1.21410 0.99134 0.96286 0.90905 1.21244 0.95211 0.95263 0.98195 0.95485 0.93361 0.93617 0.92963 0.93006 0.92670 0.75854 0.82321 0.80336 0.73613 0.72850 0.83645 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.51 71.98 0.61 -4.89 16 2 C -0.11 -5.28 5.50 30.59 0.17 -5.11 16 3 C 0.28 13.40 2.11 44.24 0.09 13.50 16 4 H 0.00 0.28 7.52 -2.39 -0.02 0.26 16 5 C -0.55 -27.38 8.66 25.60 0.22 -27.15 16 6 H 0.08 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.91 5.16 84.65 0.44 1.35 16 8 N -0.92 -51.71 12.16 21.45 0.26 -51.45 16 9 Si 0.97 40.18 29.55 68.60 2.03 42.21 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 N -0.69 -26.23 4.97 -448.89 -2.23 -28.46 16 14 C 0.53 19.98 6.33 86.82 0.55 20.53 16 15 O -0.58 -26.77 13.49 -3.84 -0.05 -26.82 16 16 C -0.10 -2.75 5.88 -20.04 -0.12 -2.87 16 17 C -0.09 -1.56 9.52 22.48 0.21 -1.34 16 18 C -0.07 -0.80 9.31 22.50 0.21 -0.59 16 19 C -0.10 -1.64 5.74 -20.07 -0.12 -1.76 16 20 C 0.44 6.61 7.04 86.75 0.61 7.22 16 21 N -0.72 -3.04 8.77 -50.43 -0.44 -3.48 16 22 S -0.67 -17.85 29.90 -56.49 -1.69 -19.54 16 23 C -0.06 -1.20 9.40 22.50 0.21 -0.99 16 24 C -0.08 -2.07 9.58 22.49 0.22 -1.85 16 25 H 0.03 1.27 7.84 -2.39 -0.02 1.26 16 26 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.04 1.92 5.65 -2.38 -0.01 1.90 16 28 H 0.05 2.73 6.80 -2.39 -0.02 2.71 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.40 12.16 6.55 -92.71 -0.61 11.55 16 32 H 0.16 2.17 6.39 -2.91 -0.02 2.16 16 33 H 0.18 0.40 7.57 -2.91 -0.02 0.38 16 34 H 0.43 -1.16 7.97 -92.71 -0.74 -1.90 16 35 H 0.44 0.91 8.81 -92.71 -0.82 0.09 16 36 H 0.15 3.17 7.53 -2.91 -0.02 3.15 16 37 H 0.13 3.74 7.64 -2.91 -0.02 3.72 16 Total: -1.00 -76.78 325.48 0.16 -76.62 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -1.02 Total: 14.90 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 3.31 Total: -3.98 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.41 Total: -83.39 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: -17.85 SS G_CDS: -1.69 Total: -19.54 kcal Total: -76.78 0.16 -76.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280871441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.805 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds