Wall clock time and date at job start Tue Mar 31 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21543 * 119.99970 * 359.97438 * 14 13 3 16 16 C 1.47948 * 120.00268 * 179.97438 * 14 13 3 17 17 C 1.39613 * 119.99150 * 359.73283 * 16 14 13 18 18 C 1.37753 * 120.00345 * 179.72234 * 17 16 14 19 19 C 1.39662 * 119.99592 * 0.56347 * 18 17 16 20 20 C 1.47744 * 120.00887 * 179.67909 * 19 18 17 21 21 N 1.34774 * 119.99519 * 35.02802 * 20 19 18 22 22 S 1.71201 * 120.00312 * 215.02209 * 20 19 18 23 23 C 1.39672 * 119.98427 * 359.70649 * 19 18 17 24 24 C 1.37743 * 119.99387 * 359.97438 * 23 19 18 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 31 31 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 32 32 H 1.07996 * 119.99513 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.99910 * 180.24912 * 18 17 16 34 34 H 0.96998 * 120.00477 * 359.97438 * 21 20 19 35 35 H 0.97006 * 119.99877 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.00610 * 179.97438 * 23 19 18 37 37 H 1.07998 * 119.99782 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3361 2.6299 -0.4655 16 6 0.0750 3.3152 -2.6622 17 6 0.9817 3.3530 -3.7232 18 6 0.6295 3.9592 -4.9089 19 6 -0.6303 4.5465 -5.0457 20 6 -1.0057 5.2031 -6.3149 21 7 -0.5673 4.7034 -7.4873 22 16 -1.9975 6.5983 -6.2963 23 6 -1.5350 4.5135 -3.9821 24 6 -1.1847 3.9013 -2.7989 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4383 31 1 2.2954 2.1150 -1.9977 32 1 1.9576 2.9032 -3.6157 33 1 1.3294 3.9849 -5.7310 34 1 -0.0051 3.9130 -7.4979 35 1 -0.8134 5.1346 -8.3206 36 1 -2.5091 4.9679 -4.0873 37 1 -1.8840 3.8761 -1.9763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280871447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:58 Heat of formation + Delta-G solvation = -4.263902 kcal Electronic energy + Delta-G solvation = -20433.177312 eV Core-core repulsion = 17301.330320 eV Total energy + Delta-G solvation = -3131.846992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29628 -38.84743 -36.83432 -35.35423 -32.82181 -32.08829 -31.28315 -30.92406 -27.49176 -25.99420 -23.22190 -22.80840 -22.25246 -20.69263 -19.72756 -19.02832 -18.41428 -17.68407 -16.84125 -15.99228 -15.70957 -15.13476 -14.80248 -14.73746 -13.94723 -13.82680 -13.66963 -13.38915 -12.85428 -12.76103 -12.53240 -12.38500 -12.21533 -11.76192 -11.56853 -11.27255 -10.88473 -10.77985 -10.49953 -9.93346 -9.88457 -9.46512 -9.38994 -9.36179 -9.26030 -8.53270 -8.32963 -8.22815 -7.98275 -6.68994 -4.28751 -0.28342 1.00500 1.04104 1.69405 2.75934 3.04036 3.36283 3.42209 3.56284 3.67229 3.79118 3.83259 4.38280 4.40848 4.55187 4.91221 5.00880 5.01321 5.18879 5.35059 5.63701 5.80993 5.88497 5.99957 6.02579 6.07193 6.13063 6.21091 6.33506 6.45718 6.61584 6.72657 6.86091 6.96099 7.25646 7.29253 7.56388 8.16252 8.31088 8.58424 8.80350 9.36174 10.69113 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.003319 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.094950 B = 8433.556674 C = 8766.898290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.043 0.957 5 C -0.632 4.632 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.884 5.884 9 Si 1.028 2.972 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.691 5.691 14 C 0.537 3.463 15 O -0.538 6.538 16 C -0.084 4.084 17 C -0.095 4.095 18 C -0.091 4.091 19 C -0.104 4.104 20 C 0.400 3.600 21 N -0.762 5.762 22 S -0.555 6.555 23 C -0.055 4.055 24 C -0.071 4.071 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.405 0.595 35 H 0.423 0.577 36 H 0.148 0.852 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 3.130 -16.204 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.147 3.853 4 H 0.061 0.939 5 C -0.669 4.669 6 H 0.081 0.919 7 C -0.158 4.158 8 N -0.515 5.515 9 Si 0.855 3.145 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.322 3.678 15 O -0.417 6.417 16 C -0.089 4.089 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.109 4.109 20 C 0.146 3.854 21 N -0.295 5.295 22 S -0.420 6.420 23 C -0.076 4.076 24 C -0.090 4.090 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.237 0.763 35 H 0.257 0.743 36 H 0.166 0.834 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.101 3.687 -13.997 17.650 hybrid contribution 1.083 -0.549 -2.548 2.823 sum -9.018 3.138 -16.545 19.102 Atomic orbital electron populations 1.21905 0.97363 0.98999 1.01977 1.22235 0.93718 0.99557 1.01520 1.19084 0.95946 0.88557 0.81719 0.93914 1.21950 0.89561 1.50421 1.04985 0.91935 1.25605 0.96577 0.91562 1.02089 1.70882 1.13852 1.36182 1.30578 0.84239 0.76079 0.77748 0.76434 1.20784 1.20562 1.19849 1.46266 1.14070 1.55174 1.18347 1.18213 0.83172 0.79605 0.86855 1.90756 1.50707 1.59725 1.40544 1.20630 0.94961 0.98462 0.94851 1.21320 0.99639 0.98208 0.92188 1.21122 0.95044 0.96741 0.98434 1.19107 0.96524 1.02222 0.93041 1.24315 0.83377 0.90727 0.86998 1.43486 1.47985 1.30177 1.07812 1.93379 1.38066 1.14972 1.95595 1.21459 0.99941 0.95441 0.90746 1.21357 0.95630 0.94438 0.97525 0.94991 0.92891 0.93347 0.93137 0.91690 0.91842 0.77390 0.84397 0.85215 0.76288 0.74280 0.83408 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.53 37.16 0.32 -2.49 16 2 C -0.13 -2.80 5.37 -26.73 -0.14 -2.94 16 3 C 0.25 5.66 1.84 -69.08 -0.13 5.54 16 4 H 0.04 1.06 6.12 -51.93 -0.32 0.75 16 5 C -0.63 -16.26 8.92 -34.44 -0.31 -16.57 16 6 H 0.06 1.67 7.96 -52.48 -0.42 1.25 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.88 -25.25 13.70 55.43 0.76 -24.50 16 9 Si 1.03 24.21 26.56 -169.99 -4.51 19.70 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.07 6.34 56.52 0.36 -5.71 16 13 N -0.69 -12.92 4.98 -55.85 -0.28 -13.20 16 14 C 0.54 9.53 6.38 -12.28 -0.08 9.45 16 15 O -0.54 -11.13 13.47 5.33 0.07 -11.06 16 16 C -0.08 -1.14 5.88 -104.89 -0.62 -1.76 16 17 C -0.09 -1.01 9.52 -39.25 -0.37 -1.38 16 18 C -0.09 -0.77 9.31 -39.23 -0.37 -1.14 16 19 C -0.10 -1.00 5.74 -104.94 -0.60 -1.60 16 20 C 0.40 3.62 7.04 -12.38 -0.09 3.53 16 21 N -0.76 -3.43 8.77 32.71 0.29 -3.14 16 22 S -0.56 -7.47 29.90 -107.50 -3.21 -10.68 16 23 C -0.05 -0.59 9.40 -39.23 -0.37 -0.96 16 24 C -0.07 -0.87 9.58 -39.25 -0.38 -1.25 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.07 7.89 -51.93 -0.41 0.66 16 27 H 0.05 0.92 5.63 -51.93 -0.29 0.62 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.46 5.77 -51.93 -0.30 1.16 16 30 H 0.27 7.64 8.73 -40.82 -0.36 7.28 16 31 H 0.39 6.36 6.54 -40.82 -0.27 6.09 16 32 H 0.14 1.30 6.39 -52.49 -0.34 0.96 16 33 H 0.13 0.67 7.57 -52.49 -0.40 0.27 16 34 H 0.40 0.74 7.97 -40.82 -0.33 0.41 16 35 H 0.42 1.37 8.81 -40.82 -0.36 1.01 16 36 H 0.15 1.54 7.53 -52.48 -0.40 1.14 16 37 H 0.15 1.84 7.64 -52.49 -0.40 1.44 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -33.05 321.40 -9.52 -42.57 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.26 Total: 5.76 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.22 Total: -10.30 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.77 Total: -40.83 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.51 Total: 19.70 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -3.21 Total: -10.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.05 -9.52 -42.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280871447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.309 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds