Wall clock time and date at job start Tue Mar 31 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21543 * 119.99970 * 359.97438 * 14 13 3 16 16 C 1.47948 * 120.00268 * 179.97438 * 14 13 3 17 17 C 1.39613 * 119.99150 * 359.73283 * 16 14 13 18 18 C 1.37753 * 120.00345 * 179.72234 * 17 16 14 19 19 C 1.39662 * 119.99592 * 0.56347 * 18 17 16 20 20 C 1.47744 * 120.00887 * 179.67909 * 19 18 17 21 21 N 1.34774 * 119.99519 * 35.02802 * 20 19 18 22 22 S 1.71201 * 120.00312 * 215.02209 * 20 19 18 23 23 C 1.39672 * 119.98427 * 359.70649 * 19 18 17 24 24 C 1.37743 * 119.99387 * 359.97438 * 23 19 18 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 31 31 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 32 32 H 1.07996 * 119.99513 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.99910 * 180.24912 * 18 17 16 34 34 H 0.96998 * 120.00477 * 359.97438 * 21 20 19 35 35 H 0.97006 * 119.99877 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.00610 * 179.97438 * 23 19 18 37 37 H 1.07998 * 119.99782 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3361 2.6299 -0.4655 16 6 0.0750 3.3152 -2.6622 17 6 0.9817 3.3530 -3.7232 18 6 0.6295 3.9592 -4.9089 19 6 -0.6303 4.5465 -5.0457 20 6 -1.0057 5.2031 -6.3149 21 7 -0.5673 4.7034 -7.4873 22 16 -1.9975 6.5983 -6.2963 23 6 -1.5350 4.5135 -3.9821 24 6 -1.1847 3.9013 -2.7989 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4383 31 1 2.2954 2.1150 -1.9977 32 1 1.9576 2.9032 -3.6157 33 1 1.3294 3.9849 -5.7310 34 1 -0.0051 3.9130 -7.4979 35 1 -0.8134 5.1346 -8.3206 36 1 -2.5091 4.9679 -4.0873 37 1 -1.8840 3.8761 -1.9763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280871447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:58 Heat of formation + Delta-G solvation = -27.698619 kcal Electronic energy + Delta-G solvation = -20434.193518 eV Core-core repulsion = 17301.330320 eV Total energy + Delta-G solvation = -3132.863197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42904 -40.01466 -37.67568 -36.99690 -34.57277 -33.60084 -32.16209 -32.11183 -29.20374 -27.00875 -24.43200 -24.10411 -23.48970 -22.02816 -21.28028 -20.04720 -19.74012 -18.80963 -18.06660 -17.38438 -16.59523 -16.52083 -16.06180 -15.78963 -15.45765 -14.91944 -14.71015 -14.60040 -14.43099 -14.38695 -14.05006 -13.60933 -13.51259 -13.19502 -12.64936 -12.50915 -12.44586 -12.29072 -12.12206 -11.77131 -11.58548 -11.22979 -10.92055 -10.40303 -10.29609 -10.18953 -9.83334 -9.44247 -9.00782 -8.80647 -6.39973 -1.13238 0.11974 0.21265 0.83609 1.47772 1.50325 1.70394 1.78604 2.21652 2.33751 2.43197 2.71241 2.94074 3.04672 3.63907 3.75854 3.79763 4.12585 4.24484 4.31864 4.40646 4.51390 4.54711 4.83408 4.85593 4.98284 5.07994 5.09957 5.20128 5.22875 5.30990 5.39227 5.54851 5.56441 5.64628 5.70977 5.95805 6.04178 6.55075 6.78344 7.25449 7.36790 8.56886 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.003319 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.094950 B = 8433.556674 C = 8766.898290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.254 3.746 4 H 0.022 0.978 5 C -0.626 4.626 6 H 0.046 0.954 7 C 0.010 3.990 8 N -0.915 5.915 9 Si 1.058 2.942 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.255 1.255 13 N -0.692 5.692 14 C 0.537 3.463 15 O -0.573 6.573 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.070 4.070 19 C -0.099 4.099 20 C 0.436 3.564 21 N -0.719 5.719 22 S -0.665 6.665 23 C -0.056 4.056 24 C -0.076 4.076 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.404 0.596 32 H 0.153 0.847 33 H 0.176 0.824 34 H 0.427 0.573 35 H 0.435 0.565 36 H 0.148 0.852 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 2.510 -18.564 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.150 3.850 4 H 0.039 0.961 5 C -0.664 4.664 6 H 0.064 0.936 7 C -0.194 4.194 8 N -0.548 5.548 9 Si 0.881 3.119 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.179 1.179 13 N -0.341 5.341 14 C 0.325 3.675 15 O -0.454 6.454 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.092 4.092 19 C -0.104 4.104 20 C 0.175 3.825 21 N -0.250 5.250 22 S -0.530 6.530 23 C -0.077 4.077 24 C -0.095 4.095 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.240 0.760 32 H 0.171 0.829 33 H 0.193 0.807 34 H 0.263 0.737 35 H 0.272 0.728 36 H 0.166 0.834 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.119 3.040 -16.443 19.545 hybrid contribution 1.167 -0.402 -2.000 2.350 sum -8.952 2.638 -18.443 20.669 Atomic orbital electron populations 1.21783 0.95643 1.00375 1.01394 1.22123 0.95158 0.98250 1.01158 1.18767 0.93685 0.89587 0.83008 0.96069 1.22130 0.91274 1.48847 1.04121 0.93551 1.26559 0.96689 0.91327 1.04802 1.70965 1.15001 1.38700 1.30152 0.83829 0.75936 0.78268 0.73860 1.20762 1.20095 1.17911 1.46033 1.15060 1.55551 1.17454 1.18756 0.82108 0.78684 0.87966 1.90732 1.51535 1.60888 1.42259 1.20303 0.96323 1.00308 0.93892 1.21492 0.99523 0.97954 0.91901 1.21485 0.94706 0.94265 0.98709 1.19209 0.96855 1.01594 0.92774 1.23775 0.81998 0.88788 0.87960 1.43427 1.45093 1.29498 1.06979 1.93723 1.43384 1.19832 1.96107 1.21442 1.00453 0.95186 0.90610 1.21265 0.95272 0.94986 0.97954 0.92547 0.94264 0.93174 0.92459 0.93085 0.92736 0.75972 0.82936 0.80650 0.73651 0.72837 0.83435 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.53 71.98 0.61 -4.40 16 2 C -0.13 -5.33 5.37 30.60 0.16 -5.16 16 3 C 0.25 11.42 1.84 44.25 0.08 11.50 16 4 H 0.02 1.07 6.12 -2.39 -0.01 1.05 16 5 C -0.63 -32.31 8.92 25.60 0.23 -32.08 16 6 H 0.05 2.49 7.96 -2.91 -0.02 2.47 16 7 C 0.01 0.53 5.15 84.66 0.44 0.96 16 8 N -0.91 -52.93 13.70 21.45 0.29 -52.64 16 9 Si 1.06 48.93 26.56 68.60 1.82 50.75 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.25 -10.94 6.34 99.48 0.63 -10.31 16 13 N -0.69 -25.25 4.98 -448.89 -2.23 -27.49 16 14 C 0.54 18.72 6.38 86.82 0.55 19.28 16 15 O -0.57 -23.79 13.47 -3.85 -0.05 -23.84 16 16 C -0.10 -2.65 5.88 -20.04 -0.12 -2.77 16 17 C -0.09 -1.60 9.52 22.49 0.21 -1.39 16 18 C -0.07 -0.84 9.31 22.50 0.21 -0.63 16 19 C -0.10 -1.57 5.74 -20.07 -0.12 -1.68 16 20 C 0.44 6.46 7.04 86.76 0.61 7.07 16 21 N -0.72 -2.95 8.77 -50.43 -0.44 -3.40 16 22 S -0.66 -17.54 29.90 -56.49 -1.69 -19.22 16 23 C -0.06 -1.13 9.40 22.50 0.21 -0.91 16 24 C -0.08 -1.81 9.58 22.48 0.22 -1.60 16 25 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.04 1.55 7.89 -2.39 -0.02 1.53 16 27 H 0.05 1.83 5.63 -2.39 -0.01 1.82 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 2.25 5.77 -2.39 -0.01 2.23 16 30 H 0.26 15.11 8.73 -92.70 -0.81 14.30 16 31 H 0.40 12.50 6.54 -92.70 -0.61 11.90 16 32 H 0.15 2.28 6.39 -2.91 -0.02 2.26 16 33 H 0.18 0.53 7.57 -2.91 -0.02 0.51 16 34 H 0.43 -1.17 7.97 -92.71 -0.74 -1.91 16 35 H 0.44 0.87 8.81 -92.70 -0.82 0.05 16 36 H 0.15 3.01 7.53 -2.91 -0.02 2.99 16 37 H 0.14 3.50 7.64 -2.91 -0.02 3.48 16 Total: -1.00 -75.08 321.40 -0.13 -75.21 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -1.13 Total: 12.44 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.31 Total: -11.82 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.38 Total: -83.52 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 1.82 Total: 50.75 kcal Atomic # 16 Polarization: -17.54 SS G_CDS: -1.69 Total: -19.22 kcal Total: -75.08 -0.13 -75.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280871447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.515 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds