Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46853 * 2 1 4 4 N 1.46503 * 109.46636 * 179.97438 * 3 2 1 5 5 C 1.36736 * 120.00040 * 279.63173 * 4 3 2 6 6 H 1.08000 * 120.00150 * 37.10956 * 5 4 3 7 7 C 1.39139 * 120.00049 * 217.10687 * 5 4 3 8 8 N 1.31313 * 120.00064 * 25.99939 * 7 5 4 9 9 Si 1.86803 * 120.00088 * 205.99994 * 7 5 4 10 10 H 1.48500 * 109.46888 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47212 * 119.99940 * 9 7 5 12 12 H 1.48497 * 109.47160 * 239.99630 * 9 7 5 13 13 C 1.34780 * 119.99698 * 99.63629 * 4 3 2 14 14 O 1.21594 * 119.99962 * 186.91549 * 13 4 3 15 15 C 1.47771 * 120.00356 * 6.90889 * 13 4 3 16 16 C 1.39712 * 119.99888 * 151.08830 * 15 13 4 17 17 C 1.37691 * 120.00122 * 180.02562 * 16 15 13 18 18 C 1.39719 * 119.99670 * 359.97438 * 17 16 15 19 19 C 1.47681 * 119.99990 * 179.97438 * 18 17 16 20 20 N 1.34775 * 120.00267 * 215.00140 * 19 18 17 21 21 S 1.71205 * 119.99759 * 35.00536 * 19 18 17 22 22 C 1.39721 * 120.00028 * 0.25718 * 18 17 16 23 23 C 1.37687 * 119.99694 * 359.52674 * 22 18 17 24 24 H 1.09005 * 109.46673 * 60.00631 * 1 2 3 25 25 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47616 * 300.00940 * 1 2 3 27 27 H 1.08991 * 109.47213 * 239.99376 * 2 1 3 28 28 H 1.08998 * 109.46348 * 119.99196 * 2 1 3 29 29 H 1.08991 * 109.47720 * 59.99686 * 3 2 1 30 30 H 1.09005 * 109.46965 * 299.99190 * 3 2 1 31 31 H 0.96995 * 119.99831 * 184.99516 * 8 7 5 32 32 H 1.08003 * 119.99967 * 0.02562 * 16 15 13 33 33 H 1.08002 * 119.99616 * 179.97438 * 17 16 15 34 34 H 0.96998 * 119.99706 * 0.02562 * 20 19 18 35 35 H 0.96996 * 119.99774 * 179.72799 * 20 19 18 36 36 H 1.08001 * 120.00294 * 179.75020 * 22 18 17 37 37 H 1.08004 * 119.99666 * 180.19916 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1882 1.2445 1.1684 6 1 3.8119 0.5476 1.9027 7 6 5.3682 1.9408 1.4107 8 7 5.5753 3.1024 0.8345 9 14 6.6579 1.2231 2.5558 10 1 6.1864 -0.0863 3.0736 11 1 7.9293 1.0332 1.8123 12 1 6.8831 2.1523 3.6921 13 6 4.1794 1.6377 -1.1499 14 8 5.3887 1.5133 -1.1745 15 6 3.4491 2.0027 -2.3816 16 6 4.0789 2.7680 -3.3663 17 6 3.3984 3.1086 -4.5138 18 6 2.0780 2.6885 -4.6936 19 6 1.3478 3.0542 -5.9240 20 7 0.0260 3.3119 -5.8718 21 16 2.1805 3.1508 -7.4168 22 6 1.4466 1.9272 -3.7067 23 6 2.1287 1.5829 -2.5613 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 1.8934 -0.5139 -0.8898 28 1 1.8932 -0.5137 0.8901 29 1 1.6767 1.9564 0.8898 30 1 1.6767 1.9563 -0.8901 31 1 6.4266 3.5538 0.9452 32 1 5.0997 3.0924 -3.2275 33 1 3.8852 3.7005 -5.2747 34 1 -0.4457 3.2575 -5.0260 35 1 -0.4528 3.5560 -6.6793 36 1 0.4247 1.6059 -3.8438 37 1 1.6416 0.9918 -1.7998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280872365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = 41.200702 kcal Electronic energy + Delta-G solvation = -21134.849661 eV Core-core repulsion = 18004.974162 eV Total energy + Delta-G solvation = -3129.875499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00859 -38.22358 -36.35047 -35.49291 -33.05630 -31.58079 -30.90382 -30.71519 -26.39609 -25.88706 -24.30290 -22.65264 -21.93062 -21.10292 -19.84983 -18.73518 -17.57930 -16.99489 -16.20730 -15.96263 -15.10286 -14.78994 -14.62147 -14.11197 -13.99039 -13.59960 -13.38196 -13.16275 -13.02069 -12.46445 -12.30856 -11.85855 -11.73276 -11.57752 -11.33255 -11.14301 -10.97734 -10.90089 -10.77689 -10.54457 -10.30270 -10.10519 -8.93516 -8.86995 -8.73835 -8.31858 -8.15520 -7.68778 -7.36174 -6.34181 -3.95594 0.13142 1.51572 1.53583 2.00734 3.14091 3.24532 3.35506 3.37382 3.66278 4.12691 4.18340 4.49180 4.71391 4.85231 5.02427 5.15967 5.24773 5.31564 5.43929 5.53459 5.59851 5.76455 5.77420 5.93946 6.00726 6.11085 6.15621 6.19347 6.21249 6.37646 6.47666 6.50938 6.65285 6.69294 6.77962 7.01256 7.44489 8.02941 8.81547 8.99306 9.44057 10.08121 10.73005 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.004617 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.404163 B = 6063.131117 C = 7165.504740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.064 3.936 4 N -0.429 5.429 5 C -0.343 4.343 6 H 0.086 0.914 7 C 0.075 3.925 8 N -0.816 5.816 9 Si 0.907 3.093 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.285 1.285 13 C 0.491 3.509 14 O -0.538 6.538 15 C -0.050 4.050 16 C -0.083 4.083 17 C -0.052 4.052 18 C -0.129 4.129 19 C 0.411 3.589 20 N -0.766 5.766 21 S -0.577 6.577 22 C -0.092 4.092 23 C -0.148 4.148 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.269 0.731 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.404 0.596 35 H 0.420 0.580 36 H 0.122 0.878 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.315 -0.574 -5.061 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.059 4.059 4 N -0.148 5.148 5 C -0.469 4.469 6 H 0.104 0.896 7 C -0.137 4.137 8 N -0.448 5.448 9 Si 0.733 3.267 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.212 1.212 13 C 0.280 3.720 14 O -0.418 6.418 15 C -0.056 4.056 16 C -0.102 4.102 17 C -0.073 4.073 18 C -0.134 4.134 19 C 0.157 3.843 20 N -0.299 5.299 21 S -0.442 6.442 22 C -0.114 4.114 23 C -0.166 4.166 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.236 0.764 35 H 0.254 0.746 36 H 0.140 0.860 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.157 -0.353 -6.014 14.470 hybrid contribution -0.316 -0.181 1.293 1.343 sum -13.472 -0.534 -4.722 14.286 Atomic orbital electron populations 1.21756 0.96040 1.01383 1.01595 1.21988 0.94941 0.98618 1.02967 1.22591 0.84644 0.95662 1.03019 1.43229 1.02850 1.62432 1.06321 1.19101 1.07995 1.23454 0.96399 0.89585 1.25145 0.99203 0.92797 0.96574 1.69877 1.23445 1.10739 1.40771 0.86242 0.81813 0.79315 0.79306 1.19369 1.20324 1.21185 1.17694 0.87411 0.84921 0.81976 1.90619 1.13604 1.53548 1.84022 1.20878 0.93559 0.94726 0.96414 1.21303 1.00772 0.96174 0.91950 1.21359 0.91543 0.97592 0.96836 1.18958 0.95916 1.05691 0.92838 1.24282 0.85494 0.76468 0.98044 1.43460 1.07846 1.63181 1.15393 1.93263 1.70398 1.64677 1.15819 1.21090 0.99287 0.98379 0.92626 1.22466 0.94651 1.01897 0.97577 0.93093 0.92858 0.92534 0.91860 0.90845 0.91543 0.89188 0.92050 0.84185 0.84112 0.76409 0.74615 0.86009 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.84 37.16 0.37 -1.22 16 2 C -0.15 -2.12 5.24 -26.73 -0.14 -2.27 16 3 C 0.06 1.13 4.84 -4.04 -0.02 1.11 16 4 N -0.43 -10.08 2.57 -115.92 -0.30 -10.37 16 5 C -0.34 -8.92 9.18 -15.03 -0.14 -9.05 16 6 H 0.09 2.13 7.96 -52.49 -0.42 1.71 16 7 C 0.08 2.03 4.12 -17.44 -0.07 1.96 16 8 N -0.82 -23.14 11.90 55.51 0.66 -22.48 16 9 Si 0.91 21.09 29.63 -169.99 -5.04 16.06 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.49 12.06 6.66 -12.36 -0.08 11.98 16 14 O -0.54 -15.48 14.46 5.28 0.08 -15.41 16 15 C -0.05 -0.98 5.63 -104.90 -0.59 -1.57 16 16 C -0.08 -1.52 9.58 -39.23 -0.38 -1.89 16 17 C -0.05 -0.81 9.40 -39.23 -0.37 -1.18 16 18 C -0.13 -1.74 5.74 -104.93 -0.60 -2.35 16 19 C 0.41 5.01 7.04 -12.40 -0.09 4.92 16 20 N -0.77 -5.46 8.77 32.69 0.29 -5.17 16 21 S -0.58 -9.41 29.90 -107.50 -3.21 -12.63 16 22 C -0.09 -1.12 9.31 -39.23 -0.37 -1.48 16 23 C -0.15 -2.24 7.51 -39.23 -0.29 -2.53 16 24 H 0.05 0.45 7.83 -51.93 -0.41 0.05 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.93 7.23 -51.93 -0.38 0.56 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 30 H 0.09 1.42 3.81 -55.53 -0.21 1.20 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.14 2.72 7.90 -52.48 -0.41 2.30 16 33 H 0.14 2.12 7.53 -52.49 -0.39 1.72 16 34 H 0.40 1.78 7.95 -40.82 -0.32 1.46 16 35 H 0.42 2.34 8.81 -40.82 -0.36 1.98 16 36 H 0.12 1.00 7.55 -52.49 -0.40 0.61 16 37 H 0.17 2.34 2.25 -52.48 -0.12 2.22 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -34.51 322.29 -9.68 -44.20 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.24 Total: 4.53 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.77 Total: -3.57 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.65 Total: -38.03 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.04 Total: 16.06 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -3.21 Total: -12.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.51 -9.68 -44.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280872365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.398 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds