Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46853 * 2 1 4 4 N 1.46503 * 109.46636 * 179.97438 * 3 2 1 5 5 C 1.36736 * 120.00040 * 279.63173 * 4 3 2 6 6 H 1.08000 * 120.00150 * 37.10956 * 5 4 3 7 7 C 1.39139 * 120.00049 * 217.10687 * 5 4 3 8 8 N 1.31313 * 120.00064 * 25.99939 * 7 5 4 9 9 Si 1.86803 * 120.00088 * 205.99994 * 7 5 4 10 10 H 1.48500 * 109.46888 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47212 * 119.99940 * 9 7 5 12 12 H 1.48497 * 109.47160 * 239.99630 * 9 7 5 13 13 C 1.34780 * 119.99698 * 99.63629 * 4 3 2 14 14 O 1.21594 * 119.99962 * 186.91549 * 13 4 3 15 15 C 1.47771 * 120.00356 * 6.90889 * 13 4 3 16 16 C 1.39712 * 119.99888 * 151.08830 * 15 13 4 17 17 C 1.37691 * 120.00122 * 180.02562 * 16 15 13 18 18 C 1.39719 * 119.99670 * 359.97438 * 17 16 15 19 19 C 1.47681 * 119.99990 * 179.97438 * 18 17 16 20 20 N 1.34775 * 120.00267 * 215.00140 * 19 18 17 21 21 S 1.71205 * 119.99759 * 35.00536 * 19 18 17 22 22 C 1.39721 * 120.00028 * 0.25718 * 18 17 16 23 23 C 1.37687 * 119.99694 * 359.52674 * 22 18 17 24 24 H 1.09005 * 109.46673 * 60.00631 * 1 2 3 25 25 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47616 * 300.00940 * 1 2 3 27 27 H 1.08991 * 109.47213 * 239.99376 * 2 1 3 28 28 H 1.08998 * 109.46348 * 119.99196 * 2 1 3 29 29 H 1.08991 * 109.47720 * 59.99686 * 3 2 1 30 30 H 1.09005 * 109.46965 * 299.99190 * 3 2 1 31 31 H 0.96995 * 119.99831 * 184.99516 * 8 7 5 32 32 H 1.08003 * 119.99967 * 0.02562 * 16 15 13 33 33 H 1.08002 * 119.99616 * 179.97438 * 17 16 15 34 34 H 0.96998 * 119.99706 * 0.02562 * 20 19 18 35 35 H 0.96996 * 119.99774 * 179.72799 * 20 19 18 36 36 H 1.08001 * 120.00294 * 179.75020 * 22 18 17 37 37 H 1.08004 * 119.99666 * 180.19916 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1882 1.2445 1.1684 6 1 3.8119 0.5476 1.9027 7 6 5.3682 1.9408 1.4107 8 7 5.5753 3.1024 0.8345 9 14 6.6579 1.2231 2.5558 10 1 6.1864 -0.0863 3.0736 11 1 7.9293 1.0332 1.8123 12 1 6.8831 2.1523 3.6921 13 6 4.1794 1.6377 -1.1499 14 8 5.3887 1.5133 -1.1745 15 6 3.4491 2.0027 -2.3816 16 6 4.0789 2.7680 -3.3663 17 6 3.3984 3.1086 -4.5138 18 6 2.0780 2.6885 -4.6936 19 6 1.3478 3.0542 -5.9240 20 7 0.0260 3.3119 -5.8718 21 16 2.1805 3.1508 -7.4168 22 6 1.4466 1.9272 -3.7067 23 6 2.1287 1.5829 -2.5613 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 1.8934 -0.5139 -0.8898 28 1 1.8932 -0.5137 0.8901 29 1 1.6767 1.9564 0.8898 30 1 1.6767 1.9563 -0.8901 31 1 6.4266 3.5538 0.9452 32 1 5.0997 3.0924 -3.2275 33 1 3.8852 3.7005 -5.2747 34 1 -0.4457 3.2575 -5.0260 35 1 -0.4528 3.5560 -6.6793 36 1 0.4247 1.6059 -3.8438 37 1 1.6416 0.9918 -1.7998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280872365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = 17.509096 kcal Electronic energy + Delta-G solvation = -21135.877006 eV Core-core repulsion = 18004.974162 eV Total energy + Delta-G solvation = -3130.902844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45885 -39.65548 -37.48772 -37.10395 -34.79207 -33.03191 -32.35176 -31.99914 -27.91541 -27.16978 -25.82402 -23.90457 -23.26661 -22.31320 -21.45138 -19.72495 -19.06934 -18.27614 -17.85019 -17.18190 -16.79372 -16.27556 -15.89000 -15.74760 -15.35614 -15.21421 -14.62966 -14.37976 -14.18958 -13.80099 -13.58678 -13.50373 -13.18868 -12.94946 -12.76842 -12.59515 -12.49830 -12.37106 -12.17959 -12.06586 -11.67989 -11.44574 -10.84663 -10.30176 -10.07093 -9.92316 -9.38343 -9.27056 -8.95401 -8.33558 -5.98891 -1.00451 0.28736 0.29444 0.89728 1.35303 1.44380 1.51482 2.09203 2.26114 2.37980 2.78595 3.03804 3.19254 3.24706 3.75603 3.83695 3.96892 4.10206 4.26504 4.29592 4.36266 4.58559 4.60580 4.71425 4.84431 4.90814 5.05944 5.12157 5.18507 5.27267 5.34862 5.38598 5.45418 5.46663 5.60253 5.70145 6.04098 6.09247 6.90036 7.13015 7.56540 8.22807 8.73757 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.004617 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.404163 B = 6063.131117 C = 7165.504740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.060 3.940 4 N -0.445 5.445 5 C -0.361 4.361 6 H 0.091 0.909 7 C 0.027 3.973 8 N -0.859 5.859 9 Si 0.961 3.039 10 H -0.254 1.254 11 H -0.297 1.297 12 H -0.273 1.273 13 C 0.481 3.519 14 O -0.598 6.598 15 C -0.081 4.081 16 C -0.099 4.099 17 C -0.051 4.051 18 C -0.116 4.116 19 C 0.445 3.555 20 N -0.718 5.718 21 S -0.674 6.674 22 C -0.062 4.062 23 C -0.137 4.137 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.262 0.738 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.428 0.572 35 H 0.435 0.565 36 H 0.185 0.815 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.220 -1.371 -5.766 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C -0.061 4.061 4 N -0.164 5.164 5 C -0.488 4.488 6 H 0.109 0.891 7 C -0.180 4.180 8 N -0.493 5.493 9 Si 0.785 3.215 10 H -0.178 1.178 11 H -0.224 1.224 12 H -0.199 1.199 13 C 0.271 3.729 14 O -0.482 6.482 15 C -0.086 4.086 16 C -0.118 4.118 17 C -0.072 4.072 18 C -0.121 4.121 19 C 0.183 3.817 20 N -0.249 5.249 21 S -0.540 6.540 22 C -0.083 4.083 23 C -0.155 4.155 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.159 0.841 34 H 0.264 0.736 35 H 0.272 0.728 36 H 0.202 0.798 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -18.190 -1.150 -6.677 19.411 hybrid contribution 0.967 0.075 1.383 1.689 sum -17.223 -1.075 -5.294 18.051 Atomic orbital electron populations 1.21733 0.92170 1.02969 1.03192 1.21909 0.98121 0.95814 1.01957 1.22887 0.81072 0.98179 1.04005 1.43443 1.05339 1.62256 1.05317 1.19360 1.08893 1.23403 0.97173 0.89141 1.25943 1.01079 0.93016 0.98002 1.69962 1.23429 1.12218 1.43738 0.85419 0.78730 0.79536 0.77787 1.17769 1.22379 1.19890 1.18556 0.87213 0.83425 0.83679 1.90557 1.16405 1.55715 1.85481 1.20576 0.95753 0.97567 0.94702 1.21097 1.00010 0.97497 0.93237 1.21308 0.92726 0.97594 0.95603 1.19102 0.95033 1.04644 0.93336 1.23626 0.86781 0.76045 0.95235 1.43362 1.05831 1.58196 1.17485 1.93634 1.72506 1.69307 1.18563 1.21594 1.01331 0.95429 0.89994 1.22564 0.92548 1.01227 0.99181 0.90288 0.91310 0.92208 0.91995 0.92934 0.91951 0.86787 0.92830 0.87183 0.84083 0.73573 0.72821 0.79768 0.79786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.84 71.98 0.71 -1.62 16 2 C -0.14 -3.71 5.24 30.60 0.16 -3.55 16 3 C 0.06 2.04 4.84 86.38 0.42 2.46 16 4 N -0.45 -21.37 2.57 -638.91 -1.64 -23.01 16 5 C -0.36 -19.40 9.18 84.15 0.77 -18.63 16 6 H 0.09 4.59 7.96 -2.91 -0.02 4.57 16 7 C 0.03 1.54 4.12 84.99 0.35 1.89 16 8 N -0.86 -51.63 11.90 21.70 0.26 -51.37 16 9 Si 0.96 45.17 29.63 68.60 2.03 47.20 16 10 H -0.25 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 C 0.48 24.60 6.66 86.76 0.58 25.18 16 14 O -0.60 -36.75 14.46 -4.01 -0.06 -36.81 16 15 C -0.08 -3.17 5.63 -20.04 -0.11 -3.28 16 16 C -0.10 -3.76 9.58 22.50 0.22 -3.54 16 17 C -0.05 -1.55 9.40 22.50 0.21 -1.34 16 18 C -0.12 -2.66 5.74 -20.07 -0.12 -2.77 16 19 C 0.44 8.80 7.04 86.74 0.61 9.41 16 20 N -0.72 -5.47 8.77 -50.48 -0.44 -5.91 16 21 S -0.67 -20.98 29.90 -56.49 -1.69 -22.66 16 22 C -0.06 -1.13 9.31 22.50 0.21 -0.92 16 23 C -0.14 -3.67 7.51 22.50 0.17 -3.50 16 24 H 0.08 0.87 7.83 -2.38 -0.02 0.85 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.66 7.23 -2.39 -0.02 1.64 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 30 H 0.11 3.23 3.81 -5.77 -0.02 3.21 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.11 4.74 7.90 -2.91 -0.02 4.72 16 33 H 0.14 4.27 7.53 -2.91 -0.02 4.25 16 34 H 0.43 0.14 7.95 -92.71 -0.74 -0.59 16 35 H 0.44 2.13 8.81 -92.71 -0.82 1.31 16 36 H 0.19 1.19 7.55 -2.91 -0.02 1.17 16 37 H 0.19 4.32 2.25 -2.91 -0.01 4.32 16 Total: -1.00 -85.33 322.29 2.20 -83.13 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -0.44 Total: 9.66 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 4.18 Total: -0.23 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.83 Total: -80.29 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.06 Total: -36.81 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -20.98 SS G_CDS: -1.69 Total: -22.66 kcal Total: -85.33 2.20 -83.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280872365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.637 kcal (2) G-P(sol) polarization free energy of solvation -85.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds