Wall clock time and date at job start Tue Mar 31 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47468 * 2 1 4 4 C 1.46503 * 120.00310 * 278.41690 * 3 2 1 5 5 C 1.50701 * 109.46686 * 269.99620 * 4 3 2 6 6 H 1.07997 * 120.00364 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99652 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46894 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46739 * 120.00342 * 9 7 5 12 12 H 1.48496 * 109.47430 * 240.00701 * 9 7 5 13 13 C 1.34778 * 119.99993 * 98.40856 * 3 2 1 14 14 O 1.21534 * 120.00361 * 186.53066 * 13 3 2 15 15 C 1.47952 * 119.99685 * 6.53585 * 13 3 2 16 16 C 1.39607 * 119.99095 * 150.28773 * 15 13 3 17 17 C 1.37756 * 120.00385 * 179.97438 * 16 15 13 18 18 C 1.39665 * 119.99363 * 0.02562 * 17 16 15 19 19 C 1.47741 * 120.00652 * 179.97438 * 18 17 16 20 20 N 1.34781 * 120.00023 * 215.00004 * 19 18 17 21 21 S 1.71202 * 120.00145 * 34.99557 * 19 18 17 22 22 C 1.39671 * 119.98947 * 0.24869 * 18 17 16 23 23 C 1.37758 * 119.98634 * 359.51511 * 22 18 17 24 24 H 1.09005 * 109.47491 * 59.99804 * 1 2 3 25 25 H 1.09000 * 109.47508 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47290 * 299.99768 * 1 2 3 27 27 H 1.09000 * 109.46771 * 240.00176 * 2 1 3 28 28 H 1.08994 * 109.47227 * 120.00579 * 2 1 3 29 29 H 1.09005 * 109.47082 * 29.99381 * 4 3 2 30 30 H 1.08997 * 109.47433 * 149.99355 * 4 3 2 31 31 H 0.97000 * 119.99912 * 179.97438 * 8 7 5 32 32 H 1.07995 * 119.99641 * 359.97199 * 16 15 13 33 33 H 1.07997 * 120.00119 * 179.97438 * 17 16 15 34 34 H 0.97000 * 119.99826 * 359.97438 * 20 19 18 35 35 H 0.96999 * 120.00099 * 179.72492 * 20 19 18 36 36 H 1.07994 * 120.01031 * 179.74578 * 22 18 17 37 37 H 1.07999 * 119.99152 * 180.20589 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0875 2.1337 -1.2550 5 6 3.4364 1.9232 -1.8932 6 1 4.1690 1.2923 -1.4119 7 6 3.7352 2.5361 -3.0916 8 7 2.8433 3.3047 -3.6775 9 14 5.4075 2.2757 -3.8824 10 1 6.2236 1.3750 -3.0293 11 1 5.2308 1.6615 -5.2228 12 1 6.0971 3.5832 -4.0240 13 6 2.4040 1.9596 1.1547 14 8 2.6960 3.1391 1.1756 15 6 2.4718 1.1585 2.3967 16 6 3.3932 1.4903 3.3917 17 6 3.4563 0.7449 4.5484 18 6 2.5986 -0.3431 4.7256 19 6 2.6664 -1.1430 5.9658 20 7 2.4465 -2.4721 5.9234 21 16 3.0243 -0.3818 7.4570 22 6 1.6808 -0.6783 3.7275 23 6 1.6150 0.0705 2.5731 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3071 1.7848 -1.9314 30 1 1.9437 3.1947 -1.0509 31 1 3.0537 3.7361 -4.5205 32 1 4.0566 2.3313 3.2544 33 1 4.1693 1.0014 5.3179 34 1 2.2434 -2.9033 5.0786 35 1 2.4949 -2.9979 6.7371 36 1 1.0203 -1.5220 3.8624 37 1 0.9030 -0.1866 1.8027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281363771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:36 Heat of formation + Delta-G solvation = 33.105535 kcal Electronic energy + Delta-G solvation = -20624.747337 eV Core-core repulsion = 17494.520806 eV Total energy + Delta-G solvation = -3130.226531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46612 -38.65258 -36.68304 -35.78086 -33.08997 -31.61937 -31.26665 -30.24044 -27.59854 -25.84697 -23.46864 -23.26592 -22.77873 -21.68343 -19.33707 -18.95434 -17.64329 -16.95792 -16.48923 -16.27988 -15.64326 -14.97095 -14.91480 -14.54733 -14.23214 -13.97242 -13.60036 -13.35888 -12.99534 -12.64179 -12.36655 -12.20189 -12.10715 -11.72024 -11.47642 -11.30004 -11.14717 -10.97766 -10.74932 -10.59354 -10.21467 -9.72509 -9.34915 -9.21385 -9.01924 -8.51252 -8.45112 -7.92239 -7.81224 -6.12142 -4.17617 -0.18161 1.12410 1.14168 1.76202 2.85668 3.14727 3.24802 3.33005 3.36007 3.63269 3.80365 3.92144 4.37830 4.49054 4.62686 4.80153 5.04010 5.19351 5.21151 5.22894 5.40661 5.47692 5.57098 5.74351 5.78725 5.88940 5.97131 6.09324 6.15904 6.24301 6.36809 6.40077 6.56923 6.95335 7.33981 7.40545 7.83742 8.13419 8.22885 8.75962 8.91856 9.47937 10.95945 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.003572 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.554586 B = 7836.184909 C = 8210.778088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 N -0.584 5.584 4 C 0.244 3.756 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.541 3.459 14 O -0.529 6.529 15 C -0.078 4.078 16 C -0.073 4.073 17 C -0.053 4.053 18 C -0.108 4.108 19 C 0.402 3.598 20 N -0.763 5.763 21 S -0.559 6.559 22 C -0.095 4.095 23 C -0.129 4.129 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.405 0.595 35 H 0.422 0.578 36 H 0.129 0.871 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -14.971 12.947 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.051 4.051 3 N -0.315 5.315 4 C 0.126 3.874 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.327 3.673 14 O -0.407 6.407 15 C -0.083 4.083 16 C -0.092 4.092 17 C -0.075 4.075 18 C -0.113 4.113 19 C 0.148 3.852 20 N -0.296 5.296 21 S -0.424 6.424 22 C -0.117 4.117 23 C -0.147 4.147 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.237 0.763 35 H 0.256 0.744 36 H 0.147 0.853 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.135 -13.838 13.759 19.947 hybrid contribution 0.567 -1.032 -1.383 1.817 sum -3.568 -14.871 12.376 19.673 Atomic orbital electron populations 1.22306 0.96448 1.01913 1.03045 1.22276 0.93793 0.84894 1.04125 1.48164 1.61278 1.13248 1.08784 1.19359 0.97242 0.92776 0.78045 1.21455 0.99765 1.29951 1.05767 0.92327 1.24936 0.97329 0.94812 0.96938 1.69939 1.34335 1.30962 1.17884 0.86435 0.83842 0.78136 0.78979 1.19784 1.20923 1.20775 1.18169 0.78956 0.87106 0.83072 1.90773 1.49147 1.15394 1.85379 1.20633 0.96293 0.95505 0.95829 1.21335 0.97398 0.98950 0.91503 1.21431 0.97526 0.91513 0.96992 1.19096 1.01279 0.98602 0.92327 1.24320 0.77033 0.85677 0.98157 1.43477 1.64063 1.06704 1.15308 1.93363 1.58521 1.74620 1.15900 1.21161 0.98060 1.00094 0.92369 1.22445 1.00293 0.94206 0.97757 0.91074 0.91658 0.92355 0.89969 0.88944 0.94679 0.93470 0.92662 0.83700 0.83503 0.76317 0.74352 0.85348 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.13 37.16 0.34 -1.75 16 2 C 0.07 1.04 5.58 -4.05 -0.02 1.02 16 3 N -0.58 -11.65 2.46 -176.14 -0.43 -12.08 16 4 C 0.24 6.11 5.22 -5.19 -0.03 6.09 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.54 10.93 7.46 -12.28 -0.09 10.84 16 14 O -0.53 -13.01 16.25 5.34 0.09 -12.92 16 15 C -0.08 -1.18 5.60 -104.90 -0.59 -1.77 16 16 C -0.07 -1.02 9.58 -39.25 -0.38 -1.40 16 17 C -0.05 -0.64 9.40 -39.22 -0.37 -1.01 16 18 C -0.11 -1.12 5.74 -104.95 -0.60 -1.72 16 19 C 0.40 3.83 7.04 -12.37 -0.09 3.75 16 20 N -0.76 -3.66 8.77 32.71 0.29 -3.37 16 21 S -0.56 -7.81 29.90 -107.50 -3.21 -11.02 16 22 C -0.09 -0.84 9.31 -39.22 -0.37 -1.20 16 23 C -0.13 -1.46 7.47 -39.25 -0.29 -1.76 16 24 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 27 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 28 H 0.09 1.09 4.01 -52.19 -0.21 0.88 16 29 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 30 H 0.05 1.35 7.34 -51.93 -0.38 0.96 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.15 2.09 7.91 -52.49 -0.42 1.67 16 33 H 0.15 1.70 7.53 -52.49 -0.40 1.30 16 34 H 0.40 0.82 7.95 -40.82 -0.32 0.49 16 35 H 0.42 1.48 8.81 -40.82 -0.36 1.12 16 36 H 0.13 0.65 7.55 -52.49 -0.40 0.26 16 37 H 0.17 1.71 2.52 -52.49 -0.13 1.58 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -35.54 326.78 -9.73 -45.27 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.19 Total: 0.15 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.90 Total: -2.11 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.59 Total: -40.54 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -3.21 Total: -11.02 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.54 -9.73 -45.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281363771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.377 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds