Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47468 * 2 1 4 4 C 1.46503 * 120.00310 * 278.41690 * 3 2 1 5 5 C 1.50701 * 109.46686 * 269.99620 * 4 3 2 6 6 H 1.07997 * 120.00364 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99652 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46894 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46739 * 120.00342 * 9 7 5 12 12 H 1.48496 * 109.47430 * 240.00701 * 9 7 5 13 13 C 1.34778 * 119.99993 * 98.40856 * 3 2 1 14 14 O 1.21534 * 120.00361 * 186.53066 * 13 3 2 15 15 C 1.47952 * 119.99685 * 6.53585 * 13 3 2 16 16 C 1.39607 * 119.99095 * 150.28773 * 15 13 3 17 17 C 1.37756 * 120.00385 * 179.97438 * 16 15 13 18 18 C 1.39665 * 119.99363 * 0.02562 * 17 16 15 19 19 C 1.47741 * 120.00652 * 179.97438 * 18 17 16 20 20 N 1.34781 * 120.00023 * 215.00004 * 19 18 17 21 21 S 1.71202 * 120.00145 * 34.99557 * 19 18 17 22 22 C 1.39671 * 119.98947 * 0.24869 * 18 17 16 23 23 C 1.37758 * 119.98634 * 359.51511 * 22 18 17 24 24 H 1.09005 * 109.47491 * 59.99804 * 1 2 3 25 25 H 1.09000 * 109.47508 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47290 * 299.99768 * 1 2 3 27 27 H 1.09000 * 109.46771 * 240.00176 * 2 1 3 28 28 H 1.08994 * 109.47227 * 120.00579 * 2 1 3 29 29 H 1.09005 * 109.47082 * 29.99381 * 4 3 2 30 30 H 1.08997 * 109.47433 * 149.99355 * 4 3 2 31 31 H 0.97000 * 119.99912 * 179.97438 * 8 7 5 32 32 H 1.07995 * 119.99641 * 359.97199 * 16 15 13 33 33 H 1.07997 * 120.00119 * 179.97438 * 17 16 15 34 34 H 0.97000 * 119.99826 * 359.97438 * 20 19 18 35 35 H 0.96999 * 120.00099 * 179.72492 * 20 19 18 36 36 H 1.07994 * 120.01031 * 179.74578 * 22 18 17 37 37 H 1.07999 * 119.99152 * 180.20589 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0875 2.1337 -1.2550 5 6 3.4364 1.9232 -1.8932 6 1 4.1690 1.2923 -1.4119 7 6 3.7352 2.5361 -3.0916 8 7 2.8433 3.3047 -3.6775 9 14 5.4075 2.2757 -3.8824 10 1 6.2236 1.3750 -3.0293 11 1 5.2308 1.6615 -5.2228 12 1 6.0971 3.5832 -4.0240 13 6 2.4040 1.9596 1.1547 14 8 2.6960 3.1391 1.1756 15 6 2.4718 1.1585 2.3967 16 6 3.3932 1.4903 3.3917 17 6 3.4563 0.7449 4.5484 18 6 2.5986 -0.3431 4.7256 19 6 2.6664 -1.1430 5.9658 20 7 2.4465 -2.4721 5.9234 21 16 3.0243 -0.3818 7.4570 22 6 1.6808 -0.6783 3.7275 23 6 1.6150 0.0705 2.5731 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3071 1.7848 -1.9314 30 1 1.9437 3.1947 -1.0509 31 1 3.0537 3.7361 -4.5205 32 1 4.0566 2.3313 3.2544 33 1 4.1693 1.0014 5.3179 34 1 2.2434 -2.9033 5.0786 35 1 2.4949 -2.9979 6.7371 36 1 1.0203 -1.5220 3.8624 37 1 0.9030 -0.1866 1.8027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281363771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = 8.125561 kcal Electronic energy + Delta-G solvation = -20625.830550 eV Core-core repulsion = 17494.520806 eV Total energy + Delta-G solvation = -3131.309744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68812 -39.86390 -37.59631 -37.28152 -35.04014 -32.89071 -32.28643 -31.44058 -29.34697 -27.03640 -25.04867 -24.47702 -23.84205 -22.81963 -20.65433 -19.77386 -18.70550 -18.48651 -18.13649 -17.51987 -16.83386 -16.46522 -16.28114 -15.83256 -15.51822 -15.16520 -14.73474 -14.55622 -14.30370 -14.04991 -13.52325 -13.37851 -13.29729 -13.24430 -13.06399 -12.68560 -12.51076 -12.43082 -12.20389 -12.11727 -11.73459 -11.69682 -10.82084 -10.66523 -10.24044 -10.03525 -9.52580 -9.40477 -8.97973 -8.24608 -6.39624 -1.08730 0.17635 0.20721 0.86984 1.36042 1.38868 1.50078 1.75699 2.13517 2.27852 2.39783 2.63769 3.05431 3.08701 3.46950 3.74585 3.77798 4.03419 4.17192 4.25353 4.32732 4.52565 4.58298 4.81204 4.85662 4.94627 4.99740 5.03012 5.09386 5.19002 5.28406 5.41389 5.43112 5.53452 5.59730 5.80174 6.01414 6.02928 6.63576 6.71093 7.20966 7.36177 8.82833 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.003572 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.554586 B = 7836.184909 C = 8210.778088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.063 3.937 3 N -0.589 5.589 4 C 0.260 3.740 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.531 3.469 14 O -0.593 6.593 15 C -0.099 4.099 16 C -0.086 4.086 17 C -0.053 4.053 18 C -0.101 4.101 19 C 0.440 3.560 20 N -0.717 5.717 21 S -0.670 6.670 22 C -0.064 4.064 23 C -0.120 4.120 24 H 0.044 0.956 25 H 0.112 0.888 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.029 0.971 30 H -0.002 1.002 31 H 0.268 0.732 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.429 0.571 35 H 0.435 0.565 36 H 0.187 0.813 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 -19.496 13.447 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.058 4.058 3 N -0.318 5.318 4 C 0.139 3.861 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.321 3.679 14 O -0.475 6.475 15 C -0.103 4.103 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.107 4.107 19 C 0.178 3.822 20 N -0.248 5.248 21 S -0.535 6.535 22 C -0.086 4.086 23 C -0.138 4.138 24 H 0.063 0.937 25 H 0.131 0.869 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.146 0.854 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.265 0.735 35 H 0.272 0.728 36 H 0.204 0.796 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.003 -18.488 14.251 23.873 hybrid contribution 0.756 0.229 -1.551 1.741 sum -4.247 -18.259 12.700 22.644 Atomic orbital electron populations 1.22282 0.93933 1.04684 1.02211 1.22733 0.95828 0.81673 1.05551 1.48162 1.61366 1.15191 1.07089 1.18784 0.96275 0.90861 0.80175 1.21734 1.00577 1.29975 1.06138 0.92707 1.25849 1.01241 0.94366 0.97555 1.70054 1.36404 1.31768 1.18398 0.85368 0.78951 0.78009 0.78490 1.19033 1.19303 1.20904 1.19009 0.77448 0.86890 0.84585 1.90722 1.51820 1.18330 1.86607 1.20241 0.99105 0.97236 0.93750 1.21180 0.97722 0.99237 0.92409 1.21374 0.98171 0.91972 0.95912 1.19211 1.00849 0.97860 0.92733 1.23710 0.76155 0.86899 0.95456 1.43402 1.59152 1.04912 1.17327 1.93737 1.64235 1.76540 1.19032 1.21632 0.96837 1.00228 0.89873 1.22554 0.99239 0.92719 0.99264 0.93688 0.86926 0.91544 0.90700 0.85404 0.95260 0.98387 0.92346 0.85773 0.83658 0.73492 0.72814 0.79592 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 9.13 71.98 0.66 -2.88 16 2 C 0.06 1.70 5.58 86.38 0.48 2.18 16 3 N -0.59 -24.13 2.46 -829.47 -2.04 -26.17 16 4 C 0.26 13.75 5.22 85.63 0.45 14.20 16 5 C -0.55 -30.89 9.39 25.60 0.24 -30.65 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 9 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 C 0.53 22.44 7.46 86.82 0.65 23.08 16 14 O -0.59 -31.52 16.25 -3.82 -0.06 -31.58 16 15 C -0.10 -2.95 5.60 -20.04 -0.11 -3.06 16 16 C -0.09 -2.47 9.58 22.49 0.22 -2.26 16 17 C -0.05 -1.22 9.40 22.50 0.21 -1.01 16 18 C -0.10 -1.69 5.74 -20.07 -0.12 -1.80 16 19 C 0.44 6.60 7.04 86.75 0.61 7.21 16 20 N -0.72 -2.58 8.77 -50.43 -0.44 -3.02 16 21 S -0.67 -18.13 29.90 -56.49 -1.69 -19.82 16 22 C -0.06 -0.74 9.31 22.50 0.21 -0.53 16 23 C -0.12 -2.23 7.47 22.49 0.17 -2.06 16 24 H 0.04 1.17 7.93 -2.38 -0.02 1.15 16 25 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.26 7.07 -2.39 -0.02 1.25 16 27 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 28 H 0.13 2.51 4.01 -2.63 -0.01 2.50 16 29 H 0.03 1.55 7.86 -2.38 -0.02 1.54 16 30 H 0.00 -0.12 7.34 -2.39 -0.02 -0.14 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.12 3.96 7.91 -2.91 -0.02 3.94 16 33 H 0.15 3.39 7.53 -2.91 -0.02 3.36 16 34 H 0.43 -1.64 7.95 -92.71 -0.74 -2.38 16 35 H 0.44 0.67 8.81 -92.71 -0.82 -0.15 16 36 H 0.19 0.11 7.55 -2.91 -0.02 0.09 16 37 H 0.19 2.83 2.52 -2.91 -0.01 2.82 16 Total: -1.00 -87.29 326.78 1.78 -85.51 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -0.42 Total: 0.53 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 4.12 Total: 3.40 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.20 Total: -84.21 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.06 Total: -31.58 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -18.13 SS G_CDS: -1.69 Total: -19.82 kcal Total: -87.29 1.78 -85.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281363771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.640 kcal (2) G-P(sol) polarization free energy of solvation -87.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds