Wall clock time and date at job start Tue Mar 31 2020 06:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47385 * 120.00146 * 2 1 3 5 5 H 1.07996 * 120.00231 * 119.99680 * 4 2 1 6 6 C 1.37873 * 119.99956 * 299.99786 * 4 2 1 7 7 N 1.31525 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00185 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47285 * 90.00294 * 8 6 4 10 10 H 1.48503 * 109.47332 * 210.00222 * 8 6 4 11 11 H 1.48500 * 109.47136 * 329.99984 * 8 6 4 12 12 N 1.46500 * 109.47120 * 240.00129 * 2 1 3 13 13 C 1.46504 * 119.99789 * 299.99972 * 12 2 1 14 14 C 1.34775 * 119.99856 * 119.99506 * 12 2 1 15 15 O 1.21534 * 120.00382 * 4.88471 * 14 12 2 16 16 C 1.47958 * 119.99534 * 184.87836 * 14 12 2 17 17 C 1.39600 * 119.99482 * 320.62246 * 16 14 12 18 18 C 1.37753 * 120.00694 * 179.72150 * 17 16 14 19 19 C 1.39666 * 119.99246 * 0.25983 * 18 17 16 20 20 C 1.47746 * 120.01109 * 180.02562 * 19 18 17 21 21 N 1.34773 * 120.00370 * 214.99667 * 20 19 18 22 22 S 1.71202 * 119.99619 * 34.99876 * 20 19 18 23 23 C 1.39678 * 119.98706 * 359.97438 * 19 18 17 24 24 C 1.37752 * 119.98821 * 0.02562 * 23 19 18 25 25 H 1.09001 * 109.47391 * 59.99831 * 1 2 3 26 26 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46855 * 300.00006 * 1 2 3 28 28 H 0.97000 * 119.99478 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.46828 * 265.68136 * 13 12 2 30 30 H 1.08997 * 109.47016 * 25.68407 * 13 12 2 31 31 H 1.09004 * 109.46958 * 145.67943 * 13 12 2 32 32 H 1.08002 * 120.00267 * 0.02562 * 17 16 14 33 33 H 1.07995 * 120.00615 * 180.27614 * 18 17 16 34 34 H 0.97004 * 119.99641 * 0.02562 * 21 20 19 35 35 H 0.96998 * 120.00245 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00654 * 180.02562 * 23 19 18 37 37 H 1.07993 * 119.99021 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1123 11 1 2.4882 -2.5653 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0355 -2.0834 15 8 3.1600 1.0990 -1.8484 16 6 3.1970 -0.6978 -3.3433 17 6 3.5420 -2.0505 -3.3412 18 6 3.9126 -2.6687 -4.5152 19 6 3.9483 -1.9407 -5.7065 20 6 4.3452 -2.6035 -6.9659 21 7 5.0454 -1.9223 -7.8944 22 16 3.9154 -4.2369 -7.2458 23 6 3.6078 -0.5860 -5.7074 24 6 3.2373 0.0315 -4.5331 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.7089 1.1612 3.4844 29 1 2.4538 -2.7361 -1.0390 30 1 0.7273 -2.3202 -0.9197 31 1 1.5485 -2.2666 -2.4979 32 1 3.5136 -2.6136 -2.4201 33 1 4.1751 -3.7162 -4.5143 34 1 5.2892 -0.9969 -7.7356 35 1 5.3063 -2.3576 -8.7210 36 1 3.6350 -0.0229 -6.6285 37 1 2.9736 1.0788 -4.5338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281441145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:25 Heat of formation + Delta-G solvation = 15.374273 kcal Electronic energy + Delta-G solvation = -20570.792256 eV Core-core repulsion = 17439.796839 eV Total energy + Delta-G solvation = -3130.995417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28839 -38.68528 -36.72532 -35.51697 -33.10627 -31.61179 -31.33229 -29.23919 -26.61404 -25.88396 -25.24815 -23.21488 -22.45891 -21.06626 -19.11366 -18.87923 -17.64763 -17.00142 -16.36232 -15.91430 -15.68415 -15.21280 -14.74733 -14.30990 -14.26107 -13.74365 -13.59179 -13.32323 -12.72645 -12.67280 -12.40456 -12.29777 -11.65594 -11.61506 -11.35678 -11.12895 -11.07562 -10.84651 -10.78319 -10.30445 -10.22132 -9.37074 -9.27297 -9.23328 -9.10593 -8.48826 -8.44831 -7.93204 -7.72541 -6.12266 -4.20615 -0.18547 1.11271 1.15510 1.75454 2.85317 3.12648 3.24996 3.31815 3.33469 3.61438 3.79912 3.87006 4.35773 4.51397 4.69980 4.81910 5.07587 5.19036 5.19969 5.41819 5.66074 5.76486 5.87951 5.94103 5.96255 6.13650 6.21406 6.24012 6.38712 6.54320 6.69714 6.75158 6.97094 7.30833 7.41602 7.64901 7.93556 8.11228 8.38118 8.72005 8.88805 9.46032 10.93120 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029454 B = 0.003406 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.416086 B = 8219.866541 C = 8640.207808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.077 3.923 14 C 0.538 3.462 15 O -0.541 6.541 16 C -0.075 4.075 17 C -0.101 4.101 18 C -0.053 4.053 19 C -0.109 4.109 20 C 0.402 3.598 21 N -0.763 5.763 22 S -0.559 6.559 23 C -0.092 4.092 24 C -0.077 4.077 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.096 0.904 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.405 0.595 35 H 0.422 0.578 36 H 0.129 0.871 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -3.647 -17.654 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.067 4.067 14 C 0.324 3.676 15 O -0.421 6.421 16 C -0.080 4.080 17 C -0.120 4.120 18 C -0.075 4.075 19 C -0.114 4.114 20 C 0.148 3.852 21 N -0.295 5.295 22 S -0.424 6.424 23 C -0.114 4.114 24 C -0.096 4.096 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.237 0.763 35 H 0.257 0.743 36 H 0.147 0.853 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.447 -3.984 -17.626 18.874 hybrid contribution 0.699 0.567 0.664 1.118 sum 6.145 -3.418 -16.962 18.362 Atomic orbital electron populations 1.22118 0.97957 0.99593 1.01002 1.19029 0.90982 0.94537 0.79696 0.91750 1.21289 1.31995 1.13085 0.90161 0.92168 1.24893 0.94861 0.94977 0.99009 1.69878 1.36218 1.22617 1.23862 0.86473 0.78657 0.79892 0.82253 1.20586 1.21098 1.19842 1.48231 1.47929 1.11738 1.23097 1.21950 1.01729 0.82877 1.00096 1.18255 0.79979 0.86104 0.83256 1.90759 1.55308 1.18492 1.77503 1.20590 0.98219 0.94237 0.94978 1.21825 0.97100 0.93729 0.99303 1.21423 0.95441 1.00272 0.90313 1.19076 1.06503 0.94022 0.91784 1.24320 0.78873 0.95444 0.86572 1.43485 1.49886 1.16300 1.19874 1.93363 1.64234 0.98292 1.86474 1.21116 0.99273 0.92408 0.98595 1.21119 0.97485 1.00488 0.90551 0.96899 0.94905 0.88601 0.92615 0.92803 0.90333 0.92184 0.83243 0.83500 0.76301 0.74347 0.85332 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.96 37.16 0.33 -3.09 16 2 C 0.26 6.35 2.63 -69.08 -0.18 6.17 16 3 H 0.06 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.53 -13.85 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.58 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.58 -11.85 2.75 -176.34 -0.49 -12.34 16 13 C 0.08 1.23 8.09 59.85 0.48 1.72 16 14 C 0.54 10.69 7.35 -12.28 -0.09 10.60 16 15 O -0.54 -12.86 16.24 5.34 0.09 -12.77 16 16 C -0.08 -1.12 5.24 -104.89 -0.55 -1.67 16 17 C -0.10 -1.27 7.54 -39.25 -0.30 -1.57 16 18 C -0.05 -0.59 9.40 -39.23 -0.37 -0.96 16 19 C -0.11 -1.10 5.74 -104.94 -0.60 -1.70 16 20 C 0.40 3.77 7.04 -12.38 -0.09 3.69 16 21 N -0.76 -3.70 8.77 32.71 0.29 -3.41 16 22 S -0.56 -7.62 29.90 -107.50 -3.21 -10.84 16 23 C -0.09 -0.84 9.31 -39.22 -0.37 -1.21 16 24 C -0.08 -0.95 9.61 -39.25 -0.38 -1.32 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 27 H 0.10 2.44 6.07 -51.92 -0.32 2.13 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.05 0.80 6.90 -51.93 -0.36 0.44 16 30 H 0.08 1.29 6.43 -51.93 -0.33 0.95 16 31 H 0.06 0.80 5.81 -51.93 -0.30 0.50 16 32 H 0.15 1.80 5.30 -52.49 -0.28 1.52 16 33 H 0.15 1.57 7.53 -52.49 -0.40 1.17 16 34 H 0.40 0.90 7.97 -40.82 -0.33 0.58 16 35 H 0.42 1.48 8.81 -40.82 -0.36 1.12 16 36 H 0.13 0.74 7.57 -52.49 -0.40 0.34 16 37 H 0.14 1.67 8.05 -52.49 -0.42 1.24 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -33.62 322.53 -9.49 -43.11 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.15 Total: 1.54 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.48 Total: -1.84 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.43 Total: -39.70 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -3.21 Total: -10.84 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.62 -9.49 -43.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281441145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.489 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds