Wall clock time and date at job start Tue Mar 31 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47385 * 120.00146 * 2 1 3 5 5 H 1.07996 * 120.00231 * 119.99680 * 4 2 1 6 6 C 1.37873 * 119.99956 * 299.99786 * 4 2 1 7 7 N 1.31525 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00185 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47285 * 90.00294 * 8 6 4 10 10 H 1.48503 * 109.47332 * 210.00222 * 8 6 4 11 11 H 1.48500 * 109.47136 * 329.99984 * 8 6 4 12 12 N 1.46500 * 109.47120 * 240.00129 * 2 1 3 13 13 C 1.46504 * 119.99789 * 299.99972 * 12 2 1 14 14 C 1.34775 * 119.99856 * 119.99506 * 12 2 1 15 15 O 1.21534 * 120.00382 * 4.88471 * 14 12 2 16 16 C 1.47958 * 119.99534 * 184.87836 * 14 12 2 17 17 C 1.39600 * 119.99482 * 320.62246 * 16 14 12 18 18 C 1.37753 * 120.00694 * 179.72150 * 17 16 14 19 19 C 1.39666 * 119.99246 * 0.25983 * 18 17 16 20 20 C 1.47746 * 120.01109 * 180.02562 * 19 18 17 21 21 N 1.34773 * 120.00370 * 214.99667 * 20 19 18 22 22 S 1.71202 * 119.99619 * 34.99876 * 20 19 18 23 23 C 1.39678 * 119.98706 * 359.97438 * 19 18 17 24 24 C 1.37752 * 119.98821 * 0.02562 * 23 19 18 25 25 H 1.09001 * 109.47391 * 59.99831 * 1 2 3 26 26 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46855 * 300.00006 * 1 2 3 28 28 H 0.97000 * 119.99478 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.46828 * 265.68136 * 13 12 2 30 30 H 1.08997 * 109.47016 * 25.68407 * 13 12 2 31 31 H 1.09004 * 109.46958 * 145.67943 * 13 12 2 32 32 H 1.08002 * 120.00267 * 0.02562 * 17 16 14 33 33 H 1.07995 * 120.00615 * 180.27614 * 18 17 16 34 34 H 0.97004 * 119.99641 * 0.02562 * 21 20 19 35 35 H 0.96998 * 120.00245 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00654 * 180.02562 * 23 19 18 37 37 H 1.07993 * 119.99021 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1123 11 1 2.4882 -2.5653 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0355 -2.0834 15 8 3.1600 1.0990 -1.8484 16 6 3.1970 -0.6978 -3.3433 17 6 3.5420 -2.0505 -3.3412 18 6 3.9126 -2.6687 -4.5152 19 6 3.9483 -1.9407 -5.7065 20 6 4.3452 -2.6035 -6.9659 21 7 5.0454 -1.9223 -7.8944 22 16 3.9154 -4.2369 -7.2458 23 6 3.6078 -0.5860 -5.7074 24 6 3.2373 0.0315 -4.5331 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.7089 1.1612 3.4844 29 1 2.4538 -2.7361 -1.0390 30 1 0.7273 -2.3202 -0.9197 31 1 1.5485 -2.2666 -2.4979 32 1 3.5136 -2.6136 -2.4201 33 1 4.1751 -3.7162 -4.5143 34 1 5.2892 -0.9969 -7.7356 35 1 5.3063 -2.3576 -8.7210 36 1 3.6350 -0.0229 -6.6285 37 1 2.9736 1.0788 -4.5338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281441145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:24 Heat of formation + Delta-G solvation = -7.295483 kcal Electronic energy + Delta-G solvation = -20571.775290 eV Core-core repulsion = 17439.796839 eV Total energy + Delta-G solvation = -3131.978451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49873 -39.91348 -37.58667 -37.23311 -34.91039 -32.78756 -32.33355 -30.89257 -27.93827 -27.33171 -26.89782 -24.31184 -23.50443 -22.46975 -20.52698 -19.69598 -18.61845 -18.44904 -18.06491 -17.40640 -16.68770 -16.46759 -16.39075 -15.64353 -15.42295 -14.85562 -14.64635 -14.48962 -14.41868 -14.05472 -13.50705 -13.48501 -13.38170 -12.95577 -12.86728 -12.72558 -12.68226 -12.34213 -12.17857 -12.11390 -12.00753 -11.19200 -10.85656 -10.52647 -10.20273 -10.10897 -9.42870 -9.37128 -8.95559 -8.15124 -6.31512 -1.06007 0.20276 0.24935 0.88163 1.42729 1.43739 1.53604 1.73934 2.19987 2.23672 2.44672 2.65586 3.07296 3.13392 3.53673 3.72845 3.81629 4.13658 4.28263 4.36545 4.52144 4.66361 4.73816 4.87890 4.90668 4.98267 5.01472 5.03829 5.10919 5.25847 5.43096 5.44644 5.56243 5.64116 5.65033 5.98561 6.00026 6.14395 6.71377 6.75427 7.21804 7.41897 8.89334 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029454 B = 0.003406 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.416086 B = 8219.866541 C = 8640.207808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.261 1.261 12 N -0.588 5.588 13 C 0.076 3.924 14 C 0.532 3.468 15 O -0.594 6.594 16 C -0.096 4.096 17 C -0.098 4.098 18 C -0.051 4.051 19 C -0.103 4.103 20 C 0.436 3.564 21 N -0.721 5.721 22 S -0.660 6.660 23 C -0.067 4.067 24 C -0.081 4.081 25 H 0.022 0.978 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.426 0.574 35 H 0.435 0.565 36 H 0.175 0.825 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.641 -4.487 -19.748 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.185 1.185 12 N -0.317 5.317 13 C -0.066 4.066 14 C 0.321 3.679 15 O -0.477 6.477 16 C -0.101 4.101 17 C -0.117 4.117 18 C -0.072 4.072 19 C -0.108 4.108 20 C 0.175 3.825 21 N -0.252 5.252 22 S -0.526 6.526 23 C -0.089 4.089 24 C -0.100 4.100 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.262 0.738 35 H 0.271 0.729 36 H 0.192 0.808 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.517 -4.824 -19.781 21.379 hybrid contribution 0.472 0.969 1.179 1.598 sum 6.989 -3.855 -18.602 20.242 Atomic orbital electron populations 1.21907 0.96908 1.00323 1.00170 1.18611 0.91728 0.92311 0.81389 0.96940 1.21569 1.31987 1.13141 0.91046 0.91968 1.25717 0.95025 0.95639 1.01978 1.70017 1.37211 1.23895 1.24469 0.85468 0.77766 0.79281 0.78596 1.20844 1.20633 1.18515 1.48191 1.48081 1.13342 1.22107 1.22174 1.01899 0.80420 1.02137 1.19034 0.78802 0.85580 0.84482 1.90715 1.57204 1.20940 1.78823 1.20211 1.01366 0.95238 0.93263 1.21735 0.97221 0.92676 1.00038 1.21468 0.94944 1.00579 0.90192 1.19196 1.05652 0.94314 0.91603 1.23783 0.78596 0.93459 0.86660 1.43433 1.45972 1.16953 1.18867 1.93695 1.68654 1.02419 1.87819 1.21416 0.96554 0.91835 0.99056 1.21216 0.97601 1.00544 0.90654 0.95921 0.93245 0.91166 0.92605 0.91456 0.90739 0.89230 0.83116 0.82985 0.73776 0.72862 0.80788 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.96 71.98 0.64 -5.73 16 2 C 0.26 13.39 2.63 44.24 0.12 13.51 16 3 H 0.01 0.77 6.91 -2.39 -0.02 0.76 16 4 C -0.54 -28.89 8.37 25.60 0.21 -28.67 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.26 11.32 21.45 0.24 -52.02 16 8 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.59 -24.46 2.75 -830.10 -2.28 -26.75 16 13 C 0.08 2.36 8.09 127.77 1.03 3.39 16 14 C 0.53 21.64 7.35 86.82 0.64 22.28 16 15 O -0.59 -29.61 16.24 -3.82 -0.06 -29.67 16 16 C -0.10 -2.75 5.24 -20.04 -0.10 -2.86 16 17 C -0.10 -2.30 7.54 22.48 0.17 -2.13 16 18 C -0.05 -1.00 9.40 22.50 0.21 -0.79 16 19 C -0.10 -1.68 5.74 -20.07 -0.12 -1.80 16 20 C 0.44 6.54 7.04 86.76 0.61 7.15 16 21 N -0.72 -3.35 8.77 -50.43 -0.44 -3.80 16 22 S -0.66 -17.12 29.90 -56.49 -1.69 -18.80 16 23 C -0.07 -0.93 9.31 22.50 0.21 -0.72 16 24 C -0.08 -1.79 9.61 22.49 0.22 -1.58 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 2.12 6.66 -2.39 -0.02 2.10 16 27 H 0.07 3.70 6.07 -2.38 -0.01 3.69 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.07 1.91 6.90 -2.39 -0.02 1.89 16 30 H 0.07 2.37 6.43 -2.39 -0.02 2.36 16 31 H 0.09 2.25 5.81 -2.38 -0.01 2.24 16 32 H 0.15 3.42 5.30 -2.91 -0.02 3.41 16 33 H 0.15 2.94 7.53 -2.91 -0.02 2.92 16 34 H 0.43 -0.77 7.97 -92.71 -0.74 -1.51 16 35 H 0.43 1.02 8.81 -92.71 -0.82 0.20 16 36 H 0.17 0.84 7.57 -2.91 -0.02 0.82 16 37 H 0.14 3.11 8.05 -2.91 -0.02 3.08 16 Total: -1.00 -78.52 322.53 1.66 -76.86 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -0.42 Total: 6.20 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 4.29 Total: 3.37 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.48 Total: -82.56 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.06 Total: -29.67 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -17.12 SS G_CDS: -1.69 Total: -18.80 kcal Total: -78.52 1.66 -76.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281441145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.560 kcal (2) G-P(sol) polarization free energy of solvation -78.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds