Wall clock time and date at job start Tue Mar 31 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86802 * 119.99863 * 2 1 4 4 H 1.48498 * 109.46883 * 275.48331 * 3 2 1 5 5 H 1.48497 * 109.47031 * 35.48234 * 3 2 1 6 6 H 1.48496 * 109.47388 * 155.48081 * 3 2 1 7 7 C 1.39056 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00668 * 343.16350 * 7 2 1 9 9 N 1.36777 * 119.99738 * 163.15763 * 7 2 1 10 10 C 1.34772 * 119.99923 * 316.20914 * 9 7 2 11 11 O 1.21840 * 120.00329 * 4.87076 * 10 9 7 12 12 C 1.41345 * 119.99951 * 184.87936 * 10 9 7 13 13 C 1.35713 * 120.00310 * 181.38806 * 12 10 9 14 14 C 1.41646 * 120.00328 * 179.97438 * 13 12 10 15 15 C 1.37148 * 126.19661 * 180.02562 * 14 13 12 16 16 N 1.30945 * 113.83250 * 179.97438 * 15 14 13 17 17 C 1.29363 * 117.50214 * 359.97438 * 16 15 14 18 18 S 1.70918 * 110.66011 * 359.74724 * 17 16 15 19 19 C 1.46501 * 119.99690 * 136.20534 * 9 7 2 20 20 C 1.55231 * 110.58099 * 51.24382 * 19 9 7 21 21 C 1.54893 * 102.58581 * 203.33569 * 20 19 9 22 22 C 1.54272 * 104.31327 * 37.93058 * 21 20 19 23 23 C 1.53878 * 106.59777 * 336.32467 * 22 21 20 24 24 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00169 * 1.37880 * 12 10 9 26 26 H 1.08000 * 119.99801 * 359.97438 * 13 12 10 27 27 H 1.08000 * 123.08135 * 359.97438 * 15 14 13 28 28 H 1.07995 * 124.67013 * 180.02562 * 17 16 15 29 29 H 1.09005 * 110.42709 * 173.83226 * 19 9 7 30 30 H 1.08994 * 110.89970 * 85.05034 * 20 19 9 31 31 H 1.08998 * 110.76940 * 321.56321 * 20 19 9 32 32 H 1.08994 * 110.48613 * 279.18911 * 21 20 19 33 33 H 1.08997 * 110.48658 * 156.67147 * 21 20 19 34 34 H 1.09002 * 110.03164 * 95.60841 * 22 21 20 35 35 H 1.09002 * 110.03286 * 216.98813 * 22 21 20 36 36 H 1.09000 * 110.03256 * 119.27767 * 23 22 21 37 37 H 1.08994 * 110.03103 * 240.66619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3792 2.1133 -1.3937 5 1 1.5078 2.6164 0.8127 6 1 3.5983 1.4097 0.5810 7 6 2.0089 -1.2043 0.0005 8 1 1.5038 -2.1195 0.2718 9 7 3.3327 -1.2298 -0.3427 10 6 3.7665 -0.5262 -1.4072 11 8 2.9982 0.2020 -2.0103 12 6 5.1128 -0.6333 -1.8240 13 6 5.5569 0.0965 -2.8786 14 6 6.9062 -0.0105 -3.2960 15 6 7.4872 0.6643 -4.3391 16 7 8.7541 0.3817 -4.5119 17 6 9.2911 -0.4734 -3.7033 18 16 8.1445 -1.0279 -2.5635 19 6 4.2790 -2.0218 0.4470 20 6 3.7633 -3.4758 0.6189 21 6 4.4974 -3.9451 1.8996 22 6 4.5065 -2.7008 2.8115 23 6 4.3677 -1.4779 1.8879 24 1 -0.4850 0.8400 -0.0004 25 1 5.7884 -1.2959 -1.3033 26 1 4.8813 0.7588 -3.3995 27 1 6.9492 1.3645 -4.9610 28 1 10.3231 -0.7896 -3.7402 29 1 5.2625 -2.0190 -0.0230 30 1 4.0448 -4.0917 -0.2352 31 1 2.6834 -3.4881 0.7662 32 1 5.5161 -4.2530 1.6642 33 1 3.9529 -4.7615 2.3739 34 1 3.6677 -2.7410 3.5064 35 1 5.4455 -2.6487 3.3627 36 1 3.4615 -0.9247 2.1345 37 1 5.2392 -0.8314 1.9908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281446777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:24 Heat of formation + Delta-G solvation = 40.837458 kcal Electronic energy + Delta-G solvation = -21154.433061 eV Core-core repulsion = 18024.541811 eV Total energy + Delta-G solvation = -3129.891250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70469 -39.40457 -37.26281 -34.39041 -33.53895 -32.03986 -29.39758 -28.28639 -27.22701 -26.34605 -24.68430 -22.10383 -20.40152 -20.17922 -20.11311 -19.10292 -17.52216 -17.33157 -16.45671 -15.48844 -15.42345 -14.73233 -14.49544 -14.24122 -14.03444 -13.87258 -13.62130 -13.13513 -12.99915 -12.71249 -12.27128 -11.99008 -11.66124 -11.31276 -11.20168 -10.88892 -10.83507 -10.77094 -10.64065 -10.23132 -10.05596 -9.94660 -9.89558 -9.75571 -9.21219 -8.69637 -8.56560 -7.98216 -7.64035 -6.30672 -4.02549 0.09332 1.29039 1.69480 1.98135 2.96084 3.42866 3.47860 3.67168 4.23710 4.28887 4.36958 4.56673 4.96773 5.02337 5.04204 5.15362 5.21907 5.26434 5.31303 5.37577 5.73078 5.87609 5.91056 5.95609 6.00471 6.03232 6.14832 6.23974 6.24739 6.39265 6.50956 6.62370 6.64601 6.74922 6.88850 7.64530 7.71044 7.90482 8.65610 8.83319 9.27796 9.72153 10.70818 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.005992 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.071581 B = 4671.625154 C = 6028.906364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.087 3.913 3 Si 0.930 3.070 4 H -0.253 1.253 5 H -0.315 1.315 6 H -0.283 1.283 7 C -0.327 4.327 8 H 0.101 0.899 9 N -0.436 5.436 10 C 0.455 3.545 11 O -0.554 6.554 12 C -0.157 4.157 13 C -0.053 4.053 14 C -0.172 4.172 15 C 0.035 3.965 16 N -0.467 5.467 17 C -0.009 4.009 18 S 0.136 5.864 19 C 0.120 3.880 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.134 4.134 24 H 0.275 0.725 25 H 0.117 0.883 26 H 0.148 0.852 27 H 0.181 0.819 28 H 0.196 0.804 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.804 -4.806 0.375 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.124 4.124 3 Si 0.762 3.238 4 H -0.180 1.180 5 H -0.246 1.246 6 H -0.209 1.209 7 C -0.454 4.454 8 H 0.118 0.882 9 N -0.153 5.153 10 C 0.251 3.749 11 O -0.442 6.442 12 C -0.182 4.182 13 C -0.077 4.077 14 C -0.294 4.294 15 C -0.119 4.119 16 N -0.179 5.179 17 C -0.303 4.303 18 S 0.391 5.609 19 C 0.015 3.985 20 C -0.167 4.167 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.173 4.173 24 H 0.085 0.915 25 H 0.134 0.866 26 H 0.166 0.834 27 H 0.198 0.802 28 H 0.212 0.788 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.708 -4.895 0.520 16.462 hybrid contribution 0.025 1.281 -0.410 1.345 sum 15.734 -3.615 0.110 16.144 Atomic orbital electron populations 1.69703 1.07054 1.28693 1.43455 1.25485 0.95049 1.00027 0.91806 0.85998 0.78563 0.81184 0.78011 1.17961 1.24590 1.20864 1.18876 0.82342 0.95821 1.48339 0.88165 1.43759 1.08002 1.41283 1.22305 1.16850 0.88351 0.87159 0.82555 1.90633 1.56840 1.40257 1.56450 1.22525 0.97265 1.00187 0.98192 1.20408 0.90680 0.99381 0.97258 1.24074 0.99270 1.04020 1.01988 1.22561 0.89417 1.02097 0.97871 1.65966 1.11430 1.14338 1.26177 1.28358 1.04909 1.00272 0.96797 1.83946 1.02304 1.41837 1.32833 1.22243 0.92624 0.91758 0.91851 1.22839 1.02207 0.94976 0.96701 1.22293 0.99893 0.97453 0.96338 1.22048 1.01010 0.94680 0.97854 1.22472 1.02724 0.97617 0.94437 0.91491 0.86563 0.83446 0.80237 0.78752 0.90312 0.92067 0.89477 0.92178 0.91954 0.91855 0.92531 0.89657 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.28 13.95 55.50 0.77 -24.50 16 2 C 0.09 2.48 4.93 -17.45 -0.09 2.39 16 3 Si 0.93 24.54 24.56 -169.99 -4.17 20.36 16 4 H -0.25 -7.05 6.25 56.52 0.35 -6.69 16 5 H -0.32 -8.18 7.11 56.52 0.40 -7.77 16 6 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.33 -8.74 8.28 -15.04 -0.12 -8.86 16 8 H 0.10 2.77 6.56 -52.49 -0.34 2.42 16 9 N -0.44 -10.06 2.18 -109.06 -0.24 -10.30 16 10 C 0.46 10.75 5.80 -15.08 -0.09 10.66 16 11 O -0.55 -15.18 11.09 5.06 0.06 -15.12 16 12 C -0.16 -2.94 8.70 -39.30 -0.34 -3.28 16 13 C -0.05 -0.91 9.39 -39.19 -0.37 -1.28 16 14 C -0.17 -2.48 6.26 -38.68 -0.24 -2.72 16 15 C 0.04 0.48 11.39 -18.33 -0.21 0.27 16 16 N -0.47 -6.25 10.50 -15.04 -0.16 -6.41 16 17 C -0.01 -0.10 12.20 51.72 0.63 0.53 16 18 S 0.14 1.57 21.97 -107.50 -2.36 -0.79 16 19 C 0.12 2.16 3.14 -66.08 -0.21 1.95 16 20 C -0.13 -2.08 6.40 -24.55 -0.16 -2.23 16 21 C -0.12 -1.57 6.82 -25.07 -0.17 -1.74 16 22 C -0.12 -1.61 6.80 -25.61 -0.17 -1.78 16 23 C -0.13 -2.28 6.43 -25.61 -0.16 -2.44 16 24 H 0.28 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.12 1.85 4.74 -52.48 -0.25 1.60 16 26 H 0.15 2.64 7.46 -52.49 -0.39 2.25 16 27 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.08 1.25 5.27 -51.93 -0.27 0.98 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.61 6.25 -51.93 -0.32 1.29 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.71 7.27 -51.93 -0.38 1.34 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -32.23 312.09 -7.63 -39.85 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.53 Total: 0.75 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.70 Total: -8.54 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.38 Total: -41.21 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.06 Total: -15.12 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.17 Total: 20.36 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.36 Total: -0.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.23 -7.63 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281446777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.692 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds