Wall clock time and date at job start Tue Mar 31 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86802 * 119.99863 * 2 1 4 4 H 1.48498 * 109.46883 * 275.48331 * 3 2 1 5 5 H 1.48497 * 109.47031 * 35.48234 * 3 2 1 6 6 H 1.48496 * 109.47388 * 155.48081 * 3 2 1 7 7 C 1.39056 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00668 * 343.16350 * 7 2 1 9 9 N 1.36777 * 119.99738 * 163.15763 * 7 2 1 10 10 C 1.34772 * 119.99923 * 316.20914 * 9 7 2 11 11 O 1.21840 * 120.00329 * 4.87076 * 10 9 7 12 12 C 1.41345 * 119.99951 * 184.87936 * 10 9 7 13 13 C 1.35713 * 120.00310 * 181.38806 * 12 10 9 14 14 C 1.41646 * 120.00328 * 179.97438 * 13 12 10 15 15 C 1.37148 * 126.19661 * 180.02562 * 14 13 12 16 16 N 1.30945 * 113.83250 * 179.97438 * 15 14 13 17 17 C 1.29363 * 117.50214 * 359.97438 * 16 15 14 18 18 S 1.70918 * 110.66011 * 359.74724 * 17 16 15 19 19 C 1.46501 * 119.99690 * 136.20534 * 9 7 2 20 20 C 1.55231 * 110.58099 * 51.24382 * 19 9 7 21 21 C 1.54893 * 102.58581 * 203.33569 * 20 19 9 22 22 C 1.54272 * 104.31327 * 37.93058 * 21 20 19 23 23 C 1.53878 * 106.59777 * 336.32467 * 22 21 20 24 24 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00169 * 1.37880 * 12 10 9 26 26 H 1.08000 * 119.99801 * 359.97438 * 13 12 10 27 27 H 1.08000 * 123.08135 * 359.97438 * 15 14 13 28 28 H 1.07995 * 124.67013 * 180.02562 * 17 16 15 29 29 H 1.09005 * 110.42709 * 173.83226 * 19 9 7 30 30 H 1.08994 * 110.89970 * 85.05034 * 20 19 9 31 31 H 1.08998 * 110.76940 * 321.56321 * 20 19 9 32 32 H 1.08994 * 110.48613 * 279.18911 * 21 20 19 33 33 H 1.08997 * 110.48658 * 156.67147 * 21 20 19 34 34 H 1.09002 * 110.03164 * 95.60841 * 22 21 20 35 35 H 1.09002 * 110.03286 * 216.98813 * 22 21 20 36 36 H 1.09000 * 110.03256 * 119.27767 * 23 22 21 37 37 H 1.08994 * 110.03103 * 240.66619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3792 2.1133 -1.3937 5 1 1.5078 2.6164 0.8127 6 1 3.5983 1.4097 0.5810 7 6 2.0089 -1.2043 0.0005 8 1 1.5038 -2.1195 0.2718 9 7 3.3327 -1.2298 -0.3427 10 6 3.7665 -0.5262 -1.4072 11 8 2.9982 0.2020 -2.0103 12 6 5.1128 -0.6333 -1.8240 13 6 5.5569 0.0965 -2.8786 14 6 6.9062 -0.0105 -3.2960 15 6 7.4872 0.6643 -4.3391 16 7 8.7541 0.3817 -4.5119 17 6 9.2911 -0.4734 -3.7033 18 16 8.1445 -1.0279 -2.5635 19 6 4.2790 -2.0218 0.4470 20 6 3.7633 -3.4758 0.6189 21 6 4.4974 -3.9451 1.8996 22 6 4.5065 -2.7008 2.8115 23 6 4.3677 -1.4779 1.8879 24 1 -0.4850 0.8400 -0.0004 25 1 5.7884 -1.2959 -1.3033 26 1 4.8813 0.7588 -3.3995 27 1 6.9492 1.3645 -4.9610 28 1 10.3231 -0.7896 -3.7402 29 1 5.2625 -2.0190 -0.0230 30 1 4.0448 -4.0917 -0.2352 31 1 2.6834 -3.4881 0.7662 32 1 5.5161 -4.2530 1.6642 33 1 3.9529 -4.7615 2.3739 34 1 3.6677 -2.7410 3.5064 35 1 5.4455 -2.6487 3.3627 36 1 3.4615 -0.9247 2.1345 37 1 5.2392 -0.8314 1.9908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281446777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:24 Heat of formation + Delta-G solvation = 19.531325 kcal Electronic energy + Delta-G solvation = -21155.356964 eV Core-core repulsion = 18024.541811 eV Total energy + Delta-G solvation = -3130.815153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31939 -40.53909 -38.71848 -35.89119 -35.19094 -33.97059 -30.69137 -29.51456 -28.63912 -27.69915 -26.13726 -23.62119 -21.75191 -21.45489 -21.25753 -20.62376 -19.02940 -18.59325 -18.07035 -17.22158 -16.67176 -16.12723 -16.00114 -15.58587 -15.42637 -15.26673 -14.94520 -14.79808 -14.31911 -14.17269 -13.97017 -13.42981 -13.28278 -12.85892 -12.50509 -12.38456 -12.25322 -12.02768 -11.94253 -11.85566 -11.72611 -11.40681 -11.16598 -10.79440 -10.78132 -10.41624 -10.13733 -9.58141 -9.24144 -8.42233 -6.15554 -1.02374 0.30712 0.69318 0.71745 1.26987 1.36847 1.51294 1.87319 2.33942 2.63546 2.72612 3.05092 3.41313 3.75169 3.78494 3.88982 3.96385 4.09320 4.22143 4.34700 4.46168 4.56995 4.64748 4.67031 4.74974 4.92615 5.03549 5.06237 5.13499 5.18379 5.21921 5.30887 5.39867 5.51613 5.59508 5.70186 5.91866 6.64481 6.75950 6.89371 7.31963 7.84892 8.64325 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.005992 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.071581 B = 4671.625154 C = 6028.906364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.043 3.957 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.315 1.315 6 H -0.271 1.271 7 C -0.324 4.324 8 H 0.076 0.924 9 N -0.454 5.454 10 C 0.462 3.538 11 O -0.601 6.601 12 C -0.202 4.202 13 C 0.000 4.000 14 C -0.234 4.234 15 C 0.065 3.935 16 N -0.500 5.500 17 C 0.022 3.978 18 S 0.192 5.808 19 C 0.112 3.888 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.113 4.113 23 C -0.137 4.137 24 H 0.272 0.728 25 H 0.148 0.852 26 H 0.130 0.870 27 H 0.192 0.808 28 H 0.239 0.761 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.545 -6.082 -0.005 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.161 4.161 3 Si 0.806 3.194 4 H -0.208 1.208 5 H -0.245 1.245 6 H -0.196 1.196 7 C -0.452 4.452 8 H 0.094 0.906 9 N -0.173 5.173 10 C 0.259 3.741 11 O -0.491 6.491 12 C -0.225 4.225 13 C -0.023 4.023 14 C -0.355 4.355 15 C -0.091 4.091 16 N -0.213 5.213 17 C -0.271 4.271 18 S 0.448 5.552 19 C 0.009 3.991 20 C -0.168 4.168 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.175 4.175 24 H 0.081 0.919 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.208 0.792 28 H 0.255 0.745 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.482 -6.209 0.190 22.362 hybrid contribution -1.226 1.658 -0.649 2.162 sum 20.256 -4.551 -0.458 20.766 Atomic orbital electron populations 1.69784 1.07995 1.28635 1.48235 1.26003 0.95422 1.02067 0.92655 0.85297 0.78426 0.79481 0.76242 1.20786 1.24540 1.19557 1.18629 0.84406 0.94382 1.47734 0.90612 1.43835 1.07456 1.42593 1.23369 1.17669 0.89903 0.84869 0.81689 1.90590 1.58716 1.42106 1.57721 1.22217 0.95329 1.04167 1.00758 1.20443 0.91737 0.95717 0.94385 1.23923 0.99060 1.07877 1.04640 1.22923 0.89608 1.00179 0.96422 1.66128 1.11234 1.16243 1.27695 1.29289 1.06418 0.97034 0.94342 1.83822 1.00335 1.39629 1.31459 1.22598 0.92696 0.91864 0.91903 1.22813 1.00404 0.94348 0.99259 1.22276 1.01231 0.97215 0.94011 1.22040 1.02359 0.93297 0.97351 1.22479 1.01297 0.99068 0.94680 0.91873 0.83463 0.85218 0.79166 0.74510 0.87356 0.90838 0.93155 0.89020 0.90797 0.92683 0.89347 0.93835 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.77 13.95 21.68 0.30 -57.47 16 2 C 0.04 2.60 4.93 84.96 0.42 3.01 16 3 Si 0.97 53.39 24.56 68.60 1.68 55.08 16 4 H -0.28 -16.35 6.25 99.48 0.62 -15.73 16 5 H -0.31 -16.82 7.11 99.48 0.71 -16.11 16 6 H -0.27 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.32 -18.40 8.28 84.12 0.70 -17.71 16 8 H 0.08 4.56 6.56 -2.91 -0.02 4.54 16 9 N -0.45 -21.56 2.18 -617.13 -1.35 -22.91 16 10 C 0.46 22.20 5.80 85.01 0.49 22.70 16 11 O -0.60 -34.27 11.09 -4.80 -0.05 -34.33 16 12 C -0.20 -7.24 8.70 22.45 0.20 -7.05 16 13 C 0.00 0.01 9.39 22.53 0.21 0.22 16 14 C -0.23 -5.91 6.26 22.85 0.14 -5.77 16 15 C 0.07 1.53 11.39 84.57 0.96 2.49 16 16 N -0.50 -10.97 10.50 -201.49 -2.12 -13.08 16 17 C 0.02 0.35 12.20 130.61 1.59 1.94 16 18 S 0.19 3.39 21.97 -56.49 -1.24 2.15 16 19 C 0.11 3.94 3.14 46.19 0.14 4.09 16 20 C -0.13 -4.08 6.40 32.01 0.20 -3.88 16 21 C -0.11 -2.48 6.82 31.67 0.22 -2.26 16 22 C -0.11 -2.80 6.80 31.32 0.21 -2.58 16 23 C -0.14 -4.53 6.43 31.32 0.20 -4.33 16 24 H 0.27 16.43 8.31 -92.71 -0.77 15.65 16 25 H 0.15 4.21 4.74 -2.91 -0.01 4.19 16 26 H 0.13 4.63 7.46 -2.91 -0.02 4.61 16 27 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.24 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.11 3.10 5.27 -2.38 -0.01 3.09 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.95 6.25 -2.39 -0.01 1.93 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.80 7.27 -2.39 -0.02 1.79 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -77.27 312.09 3.93 -73.34 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.00 Total: 6.35 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.70 Total: -9.12 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -3.16 Total: -93.46 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.33 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 1.68 Total: 55.08 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.24 Total: 2.15 kcal Total: -77.27 3.93 -73.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281446777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.868 kcal (2) G-P(sol) polarization free energy of solvation -77.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds