Wall clock time and date at job start Tue Mar 31 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46943 * 243.81960 * 3 2 1 5 5 C 1.36934 * 119.99936 * 264.05670 * 4 3 2 6 6 H 1.08004 * 119.99551 * 201.23308 * 5 4 3 7 7 C 1.38812 * 120.00493 * 21.22812 * 5 4 3 8 8 N 1.31621 * 119.99511 * 11.98600 * 7 5 4 9 9 Si 1.86793 * 120.00149 * 191.98597 * 7 5 4 10 10 H 1.48506 * 109.47375 * 84.98036 * 9 7 5 11 11 H 1.48497 * 109.47402 * 204.98118 * 9 7 5 12 12 H 1.48499 * 109.47205 * 324.98140 * 9 7 5 13 13 C 1.46495 * 119.99739 * 84.05312 * 4 3 2 14 14 C 1.50701 * 109.47172 * 270.00017 * 13 4 3 15 15 O 1.21271 * 120.00157 * 0.02562 * 14 13 4 16 16 N 1.34784 * 119.99758 * 179.97438 * 14 13 4 17 17 C 1.46501 * 120.00063 * 0.02562 * 16 14 13 18 18 C 1.46499 * 119.99712 * 180.02562 * 16 14 13 19 19 C 1.50694 * 109.47075 * 90.00229 * 18 16 14 20 20 C 1.33389 * 125.20595 * 90.00194 * 19 18 16 21 21 C 1.38424 * 114.92353 * 179.97438 * 20 19 18 22 22 C 1.33381 * 114.92105 * 359.97438 * 21 20 19 23 23 S 1.75890 * 125.20259 * 269.69111 * 19 18 16 24 24 H 4.40644 * 5.51361 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47150 * 123.82719 * 3 2 1 26 26 H 1.09001 * 109.47501 * 3.82165 * 3 2 1 27 27 H 0.97000 * 119.99523 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47325 * 150.00176 * 13 4 3 29 29 H 1.09001 * 109.47189 * 30.00170 * 13 4 3 30 30 H 1.08993 * 109.47110 * 269.99590 * 17 16 14 31 31 H 1.09005 * 109.46919 * 30.00523 * 17 16 14 32 32 H 1.09002 * 109.46678 * 149.99356 * 17 16 14 33 33 H 1.08999 * 109.47262 * 329.99922 * 18 16 14 34 34 H 1.09006 * 109.47194 * 210.00235 * 18 16 14 35 35 H 1.08004 * 122.53691 * 359.94979 * 20 19 18 36 36 H 1.07997 * 122.53805 * 180.02562 * 21 20 19 37 37 H 1.07998 * 125.20708 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6103 1.2396 5 6 3.4774 1.9357 1.2617 6 1 4.1396 2.3092 2.0288 7 6 2.9744 2.7993 0.2983 8 7 1.9935 2.4089 -0.4876 9 14 3.6898 4.5153 0.1173 10 1 4.8875 4.4624 -0.7592 11 1 2.6738 5.4140 -0.4868 12 1 4.0771 5.0337 1.4539 13 6 3.2545 -0.1981 2.4553 14 6 1.9634 -0.1360 3.2300 15 8 1.0339 0.5186 2.8079 16 7 1.8413 -0.8088 4.3915 17 6 2.9640 -1.6001 4.9011 18 6 0.5859 -0.7489 5.1442 19 6 -0.3231 -1.8635 4.6945 20 6 -0.3618 -3.0862 5.2262 21 6 -1.2802 -3.9451 4.6475 22 6 -1.9877 -3.4198 3.6462 23 16 -1.5009 -1.7487 3.3932 24 1 -1.0501 0.0001 -0.0003 25 1 3.0090 0.5729 -0.8537 26 1 3.0098 -1.0245 -0.0685 27 1 1.6423 3.0122 -1.1611 28 1 4.0663 0.1898 3.0706 29 1 3.4663 -1.2324 2.1844 30 1 2.8962 -2.6173 4.5156 31 1 3.9024 -1.1502 4.5767 32 1 2.9287 -1.6212 5.9903 33 1 0.1005 0.2105 4.9654 34 1 0.7949 -0.8575 6.2085 35 1 0.2755 -3.3836 6.0459 36 1 -1.4143 -4.9632 4.9820 37 1 -2.7463 -3.9397 3.0801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281452291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:57 Heat of formation + Delta-G solvation = 103.237798 kcal Electronic energy + Delta-G solvation = -21341.722859 eV Core-core repulsion = 18214.537491 eV Total energy + Delta-G solvation = -3127.185368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.16401 -37.56865 -35.73925 -34.67611 -31.50335 -31.27333 -30.50806 -27.43219 -26.75222 -25.87137 -24.96328 -22.99445 -21.61326 -19.27396 -18.48493 -17.34893 -17.06125 -16.56968 -15.96095 -15.60796 -15.32136 -14.77454 -14.53978 -13.60658 -13.34600 -13.18451 -12.85479 -12.65951 -12.56059 -12.40254 -12.31382 -12.19084 -11.94926 -11.34088 -11.29144 -11.09920 -10.82845 -10.68989 -10.36889 -10.20644 -9.99611 -9.09627 -8.79378 -8.55127 -8.51503 -8.22193 -8.15677 -8.14374 -6.89051 -5.68260 -3.18286 1.14647 1.89329 2.30419 2.82004 3.39913 3.46264 3.48416 3.61478 3.67163 4.40324 4.61518 4.77023 4.99033 5.10965 5.16948 5.34601 5.46009 5.53540 5.63412 5.65601 5.71638 5.74958 5.86461 5.91762 6.07823 6.17273 6.24425 6.29162 6.40957 6.62590 6.81494 6.96886 7.37395 7.66993 7.77024 7.98640 8.36014 9.11270 9.20632 9.55233 9.80212 10.25458 11.33087 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.005150 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.392958 B = 5435.329001 C = 6019.278029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.090 4.090 3 C 0.272 3.728 4 N -0.559 5.559 5 C -0.264 4.264 6 H 0.073 0.927 7 C 0.010 3.990 8 N -0.882 5.882 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.132 3.868 14 C 0.468 3.532 15 O -0.484 6.484 16 N -0.631 5.631 17 C 0.087 3.913 18 C 0.184 3.816 19 C -0.187 4.187 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.236 4.236 23 S 0.155 5.845 24 H 0.181 0.819 25 H 0.101 0.899 26 H 0.029 0.971 27 H 0.254 0.746 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -12.416 10.896 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.092 4.092 3 C 0.147 3.853 4 N -0.277 5.277 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.190 4.190 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.000 4.000 14 C 0.253 3.747 15 O -0.354 6.354 16 N -0.370 5.370 17 C -0.057 4.057 18 C 0.058 3.942 19 C -0.306 4.306 20 C -0.175 4.175 21 C -0.172 4.172 22 C -0.372 4.372 23 S 0.420 5.580 24 H 0.198 0.802 25 H 0.119 0.881 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.520 -10.720 9.423 14.493 hybrid contribution 0.098 -0.256 1.082 1.117 sum -2.423 -10.977 10.505 15.385 Atomic orbital electron populations 1.23836 0.94972 1.07845 1.04220 1.23820 0.94878 0.93902 0.96637 1.17865 0.83363 0.93587 0.90452 1.44110 1.73019 1.07975 1.02582 1.19144 1.22508 0.84183 1.13496 0.90944 1.25072 0.96188 0.97753 0.99960 1.70055 1.24573 1.35324 1.22507 0.86258 0.78017 0.84284 0.77761 1.21331 1.21799 1.20697 1.21112 0.92971 0.96501 0.89433 1.23504 0.93236 0.78274 0.79680 1.90745 1.40445 1.38409 1.65798 1.48575 1.12503 1.51498 1.24469 1.21644 0.89732 0.95404 0.98909 1.19691 0.84123 0.95460 0.94886 1.25134 1.03424 1.00343 1.01722 1.20001 1.01661 0.92780 1.03033 1.20045 0.98298 1.00947 0.97935 1.25790 1.06998 1.00137 1.04296 1.85051 1.31756 1.08108 1.33063 0.80180 0.88096 0.95329 0.93540 0.90696 0.91582 0.93504 0.90903 0.92077 0.89389 0.89774 0.84948 0.85042 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.29 18.77 29.55 0.55 -6.74 16 2 C -0.09 -2.33 9.92 -37.12 -0.37 -2.70 16 3 C 0.27 6.67 5.45 -6.83 -0.04 6.64 16 4 N -0.56 -13.80 2.09 -177.95 -0.37 -14.17 16 5 C -0.26 -7.14 9.69 -15.06 -0.15 -7.29 16 6 H 0.07 1.91 7.85 -52.48 -0.41 1.49 16 7 C 0.01 0.29 5.07 -17.43 -0.09 0.20 16 8 N -0.88 -25.78 9.08 55.49 0.50 -25.28 16 9 Si 0.91 21.96 29.57 -169.99 -5.03 16.94 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.13 2.62 4.73 -5.20 -0.02 2.60 16 14 C 0.47 9.62 7.65 -10.98 -0.08 9.54 16 15 O -0.48 -12.23 14.00 5.56 0.08 -12.15 16 16 N -0.63 -9.97 2.86 -182.96 -0.52 -10.49 16 17 C 0.09 0.98 10.29 59.85 0.62 1.59 16 18 C 0.18 2.70 5.94 -5.20 -0.03 2.67 16 19 C -0.19 -2.75 6.09 -36.01 -0.22 -2.97 16 20 C -0.14 -1.80 10.05 -41.21 -0.41 -2.22 16 21 C -0.14 -1.71 10.18 -41.21 -0.42 -2.13 16 22 C -0.24 -3.08 11.23 29.04 0.33 -2.76 16 23 S 0.16 2.49 23.33 -107.50 -2.51 -0.01 16 24 H 0.18 4.05 7.80 -54.08 -0.42 3.63 16 25 H 0.10 2.67 6.41 -51.93 -0.33 2.33 16 26 H 0.03 0.61 7.98 -51.93 -0.41 0.20 16 27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.08 1.35 7.29 -51.93 -0.38 0.97 16 29 H 0.07 1.15 7.92 -51.93 -0.41 0.74 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 32 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 33 H 0.09 1.50 7.42 -51.93 -0.39 1.12 16 34 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -33.72 332.80 -7.90 -41.62 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.74 Total: 2.10 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.34 Total: -3.57 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.39 Total: -49.93 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.51 Total: -0.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.72 -7.90 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281452291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.857 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds