Wall clock time and date at job start Tue Mar 31 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46943 * 243.81960 * 3 2 1 5 5 C 1.36934 * 119.99936 * 264.05670 * 4 3 2 6 6 H 1.08004 * 119.99551 * 201.23308 * 5 4 3 7 7 C 1.38812 * 120.00493 * 21.22812 * 5 4 3 8 8 N 1.31621 * 119.99511 * 11.98600 * 7 5 4 9 9 Si 1.86793 * 120.00149 * 191.98597 * 7 5 4 10 10 H 1.48506 * 109.47375 * 84.98036 * 9 7 5 11 11 H 1.48497 * 109.47402 * 204.98118 * 9 7 5 12 12 H 1.48499 * 109.47205 * 324.98140 * 9 7 5 13 13 C 1.46495 * 119.99739 * 84.05312 * 4 3 2 14 14 C 1.50701 * 109.47172 * 270.00017 * 13 4 3 15 15 O 1.21271 * 120.00157 * 0.02562 * 14 13 4 16 16 N 1.34784 * 119.99758 * 179.97438 * 14 13 4 17 17 C 1.46501 * 120.00063 * 0.02562 * 16 14 13 18 18 C 1.46499 * 119.99712 * 180.02562 * 16 14 13 19 19 C 1.50694 * 109.47075 * 90.00229 * 18 16 14 20 20 C 1.33389 * 125.20595 * 90.00194 * 19 18 16 21 21 C 1.38424 * 114.92353 * 179.97438 * 20 19 18 22 22 C 1.33381 * 114.92105 * 359.97438 * 21 20 19 23 23 S 1.75890 * 125.20259 * 269.69111 * 19 18 16 24 24 H 4.40644 * 5.51361 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47150 * 123.82719 * 3 2 1 26 26 H 1.09001 * 109.47501 * 3.82165 * 3 2 1 27 27 H 0.97000 * 119.99523 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47325 * 150.00176 * 13 4 3 29 29 H 1.09001 * 109.47189 * 30.00170 * 13 4 3 30 30 H 1.08993 * 109.47110 * 269.99590 * 17 16 14 31 31 H 1.09005 * 109.46919 * 30.00523 * 17 16 14 32 32 H 1.09002 * 109.46678 * 149.99356 * 17 16 14 33 33 H 1.08999 * 109.47262 * 329.99922 * 18 16 14 34 34 H 1.09006 * 109.47194 * 210.00235 * 18 16 14 35 35 H 1.08004 * 122.53691 * 359.94979 * 20 19 18 36 36 H 1.07997 * 122.53805 * 180.02562 * 21 20 19 37 37 H 1.07998 * 125.20708 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6103 1.2396 5 6 3.4774 1.9357 1.2617 6 1 4.1396 2.3092 2.0288 7 6 2.9744 2.7993 0.2983 8 7 1.9935 2.4089 -0.4876 9 14 3.6898 4.5153 0.1173 10 1 4.8875 4.4624 -0.7592 11 1 2.6738 5.4140 -0.4868 12 1 4.0771 5.0337 1.4539 13 6 3.2545 -0.1981 2.4553 14 6 1.9634 -0.1360 3.2300 15 8 1.0339 0.5186 2.8079 16 7 1.8413 -0.8088 4.3915 17 6 2.9640 -1.6001 4.9011 18 6 0.5859 -0.7489 5.1442 19 6 -0.3231 -1.8635 4.6945 20 6 -0.3618 -3.0862 5.2262 21 6 -1.2802 -3.9451 4.6475 22 6 -1.9877 -3.4198 3.6462 23 16 -1.5009 -1.7487 3.3932 24 1 -1.0501 0.0001 -0.0003 25 1 3.0090 0.5729 -0.8537 26 1 3.0098 -1.0245 -0.0685 27 1 1.6423 3.0122 -1.1611 28 1 4.0663 0.1898 3.0706 29 1 3.4663 -1.2324 2.1844 30 1 2.8962 -2.6173 4.5156 31 1 3.9024 -1.1502 4.5767 32 1 2.9287 -1.6212 5.9903 33 1 0.1005 0.2105 4.9654 34 1 0.7949 -0.8575 6.2085 35 1 0.2755 -3.3836 6.0459 36 1 -1.4143 -4.9632 4.9820 37 1 -2.7463 -3.9397 3.0801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281452291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:56 Heat of formation + Delta-G solvation = 83.277908 kcal Electronic energy + Delta-G solvation = -21342.588385 eV Core-core repulsion = 18214.537491 eV Total energy + Delta-G solvation = -3128.050894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59659 -38.68122 -37.48056 -36.11764 -33.39707 -33.09941 -31.83298 -28.94830 -27.92191 -27.78498 -26.23682 -24.26629 -23.27616 -20.40656 -19.78471 -19.28081 -18.34331 -18.19499 -17.48907 -17.17884 -16.51360 -16.39377 -15.91893 -15.42425 -14.97010 -14.79018 -14.10082 -14.02618 -13.75861 -13.56691 -13.48225 -13.29944 -13.21424 -13.10240 -12.93938 -12.69659 -12.46751 -12.24539 -12.21565 -11.94474 -11.44189 -10.90568 -10.64147 -10.44867 -10.12616 -9.65107 -9.42442 -9.38705 -8.82155 -7.75309 -5.25643 0.10850 0.81181 1.27070 1.47869 1.49206 1.56550 1.83545 2.09875 2.39425 2.51882 2.63151 2.77715 3.39613 3.85995 3.93690 3.98257 4.21575 4.25664 4.42180 4.48319 4.55672 4.62008 4.71228 4.73775 4.82088 4.89635 4.97156 5.05946 5.23748 5.38955 5.39239 5.64707 5.67259 5.76386 5.80461 6.31273 6.66671 7.13745 7.58000 7.63905 7.87573 8.26155 9.24452 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.005150 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.392958 B = 5435.329001 C = 6019.278029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.105 4.105 3 C 0.272 3.728 4 N -0.575 5.575 5 C -0.263 4.263 6 H 0.078 0.922 7 C -0.046 4.046 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.277 1.277 11 H -0.306 1.306 12 H -0.275 1.275 13 C 0.129 3.871 14 C 0.464 3.536 15 O -0.542 6.542 16 N -0.624 5.624 17 C 0.078 3.922 18 C 0.186 3.814 19 C -0.199 4.199 20 C -0.124 4.124 21 C -0.138 4.138 22 C -0.226 4.226 23 S 0.052 5.948 24 H 0.195 0.805 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.242 0.758 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -14.868 13.573 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.107 4.107 3 C 0.147 3.853 4 N -0.293 5.293 5 C -0.393 4.393 6 H 0.096 0.904 7 C -0.242 4.242 8 N -0.558 5.558 9 Si 0.796 3.204 10 H -0.203 1.203 11 H -0.234 1.234 12 H -0.200 1.200 13 C -0.002 4.002 14 C 0.250 3.750 15 O -0.417 6.417 16 N -0.360 5.360 17 C -0.063 4.063 18 C 0.061 3.939 19 C -0.317 4.317 20 C -0.156 4.156 21 C -0.169 4.169 22 C -0.362 4.362 23 S 0.316 5.684 24 H 0.212 0.788 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.022 -13.232 12.179 18.013 hybrid contribution -0.345 0.320 0.431 0.638 sum -1.367 -12.912 12.609 18.100 Atomic orbital electron populations 1.24346 0.95775 1.07922 1.04164 1.24349 0.95731 0.93911 0.96747 1.17858 0.82640 0.94758 0.90006 1.44171 1.73151 1.07608 1.04326 1.19458 1.21713 0.85359 1.12754 0.90447 1.25760 0.96964 1.01070 1.00453 1.70256 1.26304 1.35882 1.23315 0.85309 0.77078 0.80287 0.77762 1.20300 1.23352 1.20010 1.21290 0.93279 0.97399 0.88194 1.23288 0.92519 0.78260 0.80933 1.90739 1.42047 1.41198 1.67688 1.48400 1.14134 1.50542 1.22974 1.21976 0.88142 0.95169 1.01059 1.19752 0.83389 0.94069 0.96680 1.25063 1.03696 1.01349 1.01630 1.20417 1.01006 0.91459 1.02704 1.20493 0.97147 1.02337 0.96878 1.26001 1.07590 0.97747 1.04889 1.85460 1.34731 1.12077 1.36111 0.78757 0.90623 0.92084 0.94815 0.88565 0.88752 0.92268 0.90137 0.88700 0.92942 0.85624 0.81434 0.81513 0.80586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -15.84 18.77 74.32 1.40 -14.45 16 2 C -0.10 -5.58 9.92 31.12 0.31 -5.27 16 3 C 0.27 13.51 5.45 84.57 0.46 13.97 16 4 N -0.57 -28.20 2.09 -716.91 -1.50 -29.70 16 5 C -0.26 -14.25 9.69 84.03 0.81 -13.44 16 6 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 7 C -0.05 -2.62 5.07 84.86 0.43 -2.19 16 8 N -0.91 -55.22 9.08 21.65 0.20 -55.02 16 9 Si 0.97 46.10 29.57 68.60 2.03 48.12 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.13 4.90 4.73 85.63 0.40 5.30 16 14 C 0.46 18.74 7.65 87.66 0.67 19.41 16 15 O -0.54 -28.09 14.00 -3.00 -0.04 -28.13 16 16 N -0.62 -18.25 2.86 -851.14 -2.43 -20.68 16 17 C 0.08 1.41 10.29 127.77 1.31 2.72 16 18 C 0.19 5.15 5.94 85.63 0.51 5.66 16 19 C -0.20 -5.51 6.09 24.59 0.15 -5.36 16 20 C -0.12 -2.63 10.05 21.22 0.21 -2.41 16 21 C -0.14 -2.82 10.18 21.21 0.22 -2.60 16 22 C -0.23 -5.52 11.23 66.72 0.75 -4.78 16 23 S 0.05 1.72 23.33 -56.49 -1.32 0.40 16 24 H 0.20 9.16 7.80 -4.41 -0.03 9.13 16 25 H 0.08 4.12 6.41 -2.39 -0.02 4.10 16 26 H 0.06 2.56 7.98 -2.39 -0.02 2.54 16 27 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.10 3.21 7.29 -2.39 -0.02 3.20 16 29 H 0.09 3.02 7.92 -2.39 -0.02 3.00 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.35 6.44 -2.38 -0.02 1.33 16 32 H 0.09 1.12 7.89 -2.39 -0.02 1.10 16 33 H 0.05 1.84 7.42 -2.39 -0.02 1.82 16 34 H 0.13 2.37 7.89 -2.38 -0.02 2.35 16 35 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.18 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -77.01 332.80 5.63 -71.38 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.06 Total: 17.07 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 7.63 Total: -3.44 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.73 Total: -105.40 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.04 Total: -28.13 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.40 kcal Total: -77.01 5.63 -71.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281452291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.657 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds