Wall clock time and date at job start Tue Mar 31 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46981 * 276.93834 * 3 2 1 5 5 C 1.36940 * 119.99946 * 264.35351 * 4 3 2 6 6 H 1.07993 * 120.00270 * 196.60259 * 5 4 3 7 7 C 1.38814 * 119.99892 * 16.60554 * 5 4 3 8 8 N 1.31622 * 119.99941 * 22.37351 * 7 5 4 9 9 Si 1.86796 * 119.99904 * 202.37895 * 7 5 4 10 10 H 1.48500 * 109.47320 * 59.99543 * 9 7 5 11 11 H 1.48500 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47101 * 299.99898 * 9 7 5 13 13 C 1.46492 * 119.99971 * 84.35693 * 4 3 2 14 14 C 1.50698 * 109.47403 * 269.99897 * 13 4 3 15 15 O 1.21289 * 119.99413 * 359.97438 * 14 13 4 16 16 N 1.34771 * 120.00530 * 180.02562 * 14 13 4 17 17 C 1.46499 * 120.00151 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46939 * 180.02562 * 17 16 14 19 19 S 1.75885 * 125.20265 * 270.02405 * 18 17 16 20 20 C 1.75878 * 90.97117 * 179.97438 * 19 18 17 21 21 C 1.33397 * 109.59395 * 359.97438 * 20 19 18 22 22 C 1.33391 * 125.20273 * 89.72388 * 18 17 16 23 23 C 1.50696 * 122.54189 * 0.02562 * 22 18 17 24 24 H 4.40643 * 5.51471 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.46781 * 156.93912 * 3 2 1 26 26 H 1.08994 * 109.47220 * 36.94099 * 3 2 1 27 27 H 0.97003 * 119.99609 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47595 * 149.99787 * 13 4 3 29 29 H 1.08998 * 109.47203 * 29.99865 * 13 4 3 30 30 H 0.97001 * 120.00142 * 0.02562 * 16 14 13 31 31 H 1.08998 * 109.47187 * 300.00100 * 17 16 14 32 32 H 1.08997 * 109.47398 * 59.99882 * 17 16 14 33 33 H 1.08002 * 125.20516 * 180.02562 * 20 19 18 34 34 H 1.08001 * 122.53842 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.47334 * 90.00240 * 23 22 18 36 36 H 1.08997 * 109.47593 * 210.00305 * 23 22 18 37 37 H 1.09009 * 109.47208 * 330.00916 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1660 1.3712 5 6 3.4721 0.9324 2.1159 6 1 4.0734 0.8176 3.0056 7 6 3.0416 2.1936 1.7273 8 7 1.9884 2.3182 0.9477 9 14 3.9568 3.7138 2.3107 10 1 5.3644 3.6548 1.8412 11 1 3.3022 4.9276 1.7598 12 1 3.9319 3.7677 3.7946 13 6 3.2615 -1.5076 1.9454 14 6 1.9721 -1.8866 2.6271 15 8 1.0389 -1.1118 2.6330 16 7 1.8561 -3.0858 3.2310 17 6 0.6027 -3.4539 3.8941 18 6 0.7339 -4.8337 4.4859 19 16 0.3414 -6.3342 3.6564 20 6 0.7997 -7.2716 5.0722 21 6 1.2028 -6.4492 6.0420 22 6 1.1708 -5.1041 5.7169 23 6 1.5940 -4.0266 6.6817 24 1 -1.0500 0.0002 0.0001 25 1 3.0089 0.9463 -0.4025 26 1 3.0097 -0.8205 -0.6176 27 1 1.6873 3.1995 0.6765 28 1 4.0732 -1.5162 2.6729 29 1 3.4772 -2.2235 1.1522 30 1 2.6028 -3.7050 3.2272 31 1 0.3873 -2.7378 4.6871 32 1 -0.2092 -3.4457 3.1669 33 1 0.7614 -8.3485 5.1450 34 1 1.5318 -6.8059 7.0068 35 1 0.7335 -3.7066 7.2693 36 1 2.3636 -4.4169 7.3476 37 1 1.9909 -3.1768 6.1262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281499978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:36 Heat of formation + Delta-G solvation = 87.298636 kcal Electronic energy + Delta-G solvation = -20606.596499 eV Core-core repulsion = 17478.719956 eV Total energy + Delta-G solvation = -3127.876542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.10957 -38.22239 -35.67136 -34.11335 -31.43659 -31.33223 -30.89973 -28.97887 -27.00705 -25.85744 -24.67670 -22.66048 -21.74068 -19.69672 -18.50364 -17.60389 -17.34096 -16.41535 -15.96182 -15.49923 -15.24384 -14.65140 -14.63074 -13.90026 -13.75581 -13.43796 -13.11712 -13.04982 -12.65091 -12.43896 -12.23710 -12.10867 -11.81443 -11.68579 -11.36887 -11.21232 -10.86243 -10.77594 -10.66154 -10.25363 -9.96000 -9.22249 -8.80613 -8.69213 -8.57867 -8.46022 -8.41195 -8.22483 -6.96399 -5.71164 -3.13110 0.79818 1.50558 1.88421 2.50578 3.41560 3.47417 3.48471 3.65650 3.92485 4.37865 4.58270 4.66632 4.69515 4.77519 5.13760 5.27179 5.38176 5.42560 5.56576 5.64144 5.67873 5.73767 5.86475 5.93166 6.01806 6.05878 6.16624 6.29657 6.31558 6.41880 6.76440 6.97714 7.28752 7.59662 7.77776 8.13846 8.33784 9.11484 9.21489 9.47873 9.79790 10.23786 11.31188 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024311 B = 0.003843 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.485360 B = 7283.978868 C = 7937.207447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.095 4.095 3 C 0.270 3.730 4 N -0.557 5.557 5 C -0.268 4.268 6 H 0.075 0.925 7 C 0.009 3.991 8 N -0.876 5.876 9 Si 0.902 3.098 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.129 3.871 14 C 0.465 3.535 15 O -0.494 6.494 16 N -0.746 5.746 17 C 0.194 3.806 18 C -0.192 4.192 19 S 0.106 5.894 20 C -0.215 4.215 21 C -0.132 4.132 22 C -0.091 4.091 23 C -0.099 4.099 24 H 0.183 0.817 25 H 0.098 0.902 26 H 0.035 0.965 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.391 0.609 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 -18.438 6.715 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.098 4.098 3 C 0.145 3.855 4 N -0.275 5.275 5 C -0.397 4.397 6 H 0.093 0.907 7 C -0.192 4.192 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.003 4.003 14 C 0.249 3.751 15 O -0.364 6.364 16 N -0.404 5.404 17 C 0.068 3.932 18 C -0.310 4.310 19 S 0.371 5.629 20 C -0.351 4.351 21 C -0.163 4.163 22 C -0.104 4.104 23 C -0.158 4.158 24 H 0.201 0.799 25 H 0.115 0.885 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.224 0.776 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.180 0.820 34 H 0.156 0.844 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.835 -17.983 5.138 18.721 hybrid contribution 0.561 0.715 2.055 2.246 sum -0.274 -17.268 7.193 18.708 Atomic orbital electron populations 1.23949 0.95127 1.07313 1.04403 1.23923 0.94999 0.94459 0.96388 1.17880 0.83240 0.99589 0.84827 1.44234 1.72727 1.00256 1.10243 1.19128 1.26432 0.84431 1.09683 0.90713 1.24948 0.96082 0.98016 1.00111 1.70190 1.20943 1.22296 1.38334 0.86387 0.79547 0.82650 0.78274 1.20928 1.21728 1.21061 1.21078 0.93026 0.89347 0.96825 1.23513 0.93209 0.79855 0.78534 1.90769 1.40080 1.49070 1.56496 1.46672 1.14967 1.19676 1.59121 1.19471 0.88878 0.88201 0.96637 1.24459 1.09798 0.98702 0.98042 1.84400 1.65211 0.96951 1.16355 1.25611 1.08676 1.03380 0.97394 1.20057 1.03514 0.92159 1.00542 1.18934 1.01436 0.95173 0.94899 1.20574 1.01268 0.96487 0.97451 0.79926 0.88459 0.94721 0.93559 0.90468 0.91334 0.77574 0.90368 0.91381 0.81998 0.84386 0.91162 0.91495 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.33 18.79 29.55 0.56 -6.77 16 2 C -0.09 -2.47 10.03 -37.12 -0.37 -2.85 16 3 C 0.27 6.55 5.45 -6.83 -0.04 6.52 16 4 N -0.56 -13.71 2.09 -177.96 -0.37 -14.08 16 5 C -0.27 -7.26 9.66 -15.06 -0.15 -7.41 16 6 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 7 C 0.01 0.25 4.85 -17.43 -0.08 0.16 16 8 N -0.88 -25.73 9.49 55.49 0.53 -25.20 16 9 Si 0.90 21.74 29.61 -169.99 -5.03 16.71 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.13 2.53 6.18 -5.20 -0.03 2.50 16 14 C 0.47 9.49 7.81 -10.99 -0.09 9.41 16 15 O -0.49 -12.79 14.44 5.55 0.08 -12.71 16 16 N -0.75 -11.55 5.55 -61.47 -0.34 -11.89 16 17 C 0.19 2.87 5.53 -5.19 -0.03 2.84 16 18 C -0.19 -2.34 5.87 -36.00 -0.21 -2.56 16 19 S 0.11 1.13 23.33 -107.50 -2.51 -1.38 16 20 C -0.21 -1.96 11.23 29.04 0.33 -1.63 16 21 C -0.13 -1.25 9.98 -41.21 -0.41 -1.67 16 22 C -0.09 -1.00 5.80 -106.25 -0.62 -1.62 16 23 C -0.10 -1.00 9.60 36.00 0.35 -0.65 16 24 H 0.18 4.08 7.80 -54.09 -0.42 3.66 16 25 H 0.10 2.54 6.41 -51.93 -0.33 2.21 16 26 H 0.03 0.72 7.97 -51.93 -0.41 0.31 16 27 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.08 1.36 8.02 -51.93 -0.42 0.95 16 29 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 30 H 0.39 4.97 8.46 -40.82 -0.35 4.63 16 31 H 0.08 1.24 7.33 -51.93 -0.38 0.86 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 37 H 0.07 0.85 7.26 -51.92 -0.38 0.47 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -33.83 334.55 -8.17 -41.99 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.76 Total: 5.23 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.80 Total: -3.72 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.19 Total: -51.18 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.83 -8.17 -41.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281499978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.293 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds