Wall clock time and date at job start Tue Mar 31 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46981 * 276.93834 * 3 2 1 5 5 C 1.36940 * 119.99946 * 264.35351 * 4 3 2 6 6 H 1.07993 * 120.00270 * 196.60259 * 5 4 3 7 7 C 1.38814 * 119.99892 * 16.60554 * 5 4 3 8 8 N 1.31622 * 119.99941 * 22.37351 * 7 5 4 9 9 Si 1.86796 * 119.99904 * 202.37895 * 7 5 4 10 10 H 1.48500 * 109.47320 * 59.99543 * 9 7 5 11 11 H 1.48500 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47101 * 299.99898 * 9 7 5 13 13 C 1.46492 * 119.99971 * 84.35693 * 4 3 2 14 14 C 1.50698 * 109.47403 * 269.99897 * 13 4 3 15 15 O 1.21289 * 119.99413 * 359.97438 * 14 13 4 16 16 N 1.34771 * 120.00530 * 180.02562 * 14 13 4 17 17 C 1.46499 * 120.00151 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46939 * 180.02562 * 17 16 14 19 19 S 1.75885 * 125.20265 * 270.02405 * 18 17 16 20 20 C 1.75878 * 90.97117 * 179.97438 * 19 18 17 21 21 C 1.33397 * 109.59395 * 359.97438 * 20 19 18 22 22 C 1.33391 * 125.20273 * 89.72388 * 18 17 16 23 23 C 1.50696 * 122.54189 * 0.02562 * 22 18 17 24 24 H 4.40643 * 5.51471 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.46781 * 156.93912 * 3 2 1 26 26 H 1.08994 * 109.47220 * 36.94099 * 3 2 1 27 27 H 0.97003 * 119.99609 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47595 * 149.99787 * 13 4 3 29 29 H 1.08998 * 109.47203 * 29.99865 * 13 4 3 30 30 H 0.97001 * 120.00142 * 0.02562 * 16 14 13 31 31 H 1.08998 * 109.47187 * 300.00100 * 17 16 14 32 32 H 1.08997 * 109.47398 * 59.99882 * 17 16 14 33 33 H 1.08002 * 125.20516 * 180.02562 * 20 19 18 34 34 H 1.08001 * 122.53842 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.47334 * 90.00240 * 23 22 18 36 36 H 1.08997 * 109.47593 * 210.00305 * 23 22 18 37 37 H 1.09009 * 109.47208 * 330.00916 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1660 1.3712 5 6 3.4721 0.9324 2.1159 6 1 4.0734 0.8176 3.0056 7 6 3.0416 2.1936 1.7273 8 7 1.9884 2.3182 0.9477 9 14 3.9568 3.7138 2.3107 10 1 5.3644 3.6548 1.8412 11 1 3.3022 4.9276 1.7598 12 1 3.9319 3.7677 3.7946 13 6 3.2615 -1.5076 1.9454 14 6 1.9721 -1.8866 2.6271 15 8 1.0389 -1.1118 2.6330 16 7 1.8561 -3.0858 3.2310 17 6 0.6027 -3.4539 3.8941 18 6 0.7339 -4.8337 4.4859 19 16 0.3414 -6.3342 3.6564 20 6 0.7997 -7.2716 5.0722 21 6 1.2028 -6.4492 6.0420 22 6 1.1708 -5.1041 5.7169 23 6 1.5940 -4.0266 6.6817 24 1 -1.0500 0.0002 0.0001 25 1 3.0089 0.9463 -0.4025 26 1 3.0097 -0.8205 -0.6176 27 1 1.6873 3.1995 0.6765 28 1 4.0732 -1.5162 2.6729 29 1 3.4772 -2.2235 1.1522 30 1 2.6028 -3.7050 3.2272 31 1 0.3873 -2.7378 4.6871 32 1 -0.2092 -3.4457 3.1669 33 1 0.7614 -8.3485 5.1450 34 1 1.5318 -6.8059 7.0068 35 1 0.7335 -3.7066 7.2693 36 1 2.3636 -4.4169 7.3476 37 1 1.9909 -3.1768 6.1262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281499978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:35 Heat of formation + Delta-G solvation = 66.060699 kcal Electronic energy + Delta-G solvation = -20607.517445 eV Core-core repulsion = 17478.719956 eV Total energy + Delta-G solvation = -3128.797488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51171 -39.30705 -37.47832 -35.54841 -33.42246 -33.08945 -32.02443 -30.15181 -28.53026 -27.80008 -25.83529 -23.83273 -23.22666 -21.24821 -19.43000 -19.33469 -18.57575 -18.28336 -17.35454 -17.08435 -16.48323 -16.19684 -15.93108 -15.42995 -15.18380 -14.87068 -14.62925 -14.42479 -13.97450 -13.60388 -13.55300 -13.30252 -13.13176 -12.90664 -12.78030 -12.62538 -12.53096 -12.40479 -12.24272 -11.92798 -11.62427 -10.95226 -10.66236 -10.54646 -10.21262 -9.91391 -9.64705 -9.28016 -8.90596 -7.77934 -5.20695 -0.03419 0.67313 1.08840 1.50158 1.51869 1.58851 1.70590 2.05101 2.40535 2.57920 2.62314 2.70100 3.35743 3.68014 3.84827 4.05003 4.14844 4.17476 4.31911 4.53585 4.58874 4.65109 4.69409 4.73303 4.77586 4.78297 4.95421 5.11524 5.14029 5.33240 5.50319 5.57989 5.62727 5.65472 5.72710 6.27908 6.80584 7.11549 7.50996 7.63303 7.86442 8.24525 9.22947 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024311 B = 0.003843 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.485360 B = 7283.978868 C = 7937.207447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.111 4.111 3 C 0.268 3.732 4 N -0.573 5.573 5 C -0.270 4.270 6 H 0.079 0.921 7 C -0.047 4.047 8 N -0.909 5.909 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.302 1.302 12 H -0.284 1.284 13 C 0.124 3.876 14 C 0.467 3.533 15 O -0.556 6.556 16 N -0.723 5.723 17 C 0.203 3.797 18 C -0.221 4.221 19 S 0.095 5.905 20 C -0.196 4.196 21 C -0.141 4.141 22 C -0.082 4.082 23 C -0.099 4.099 24 H 0.202 0.798 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.243 0.757 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.409 0.591 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.193 0.807 34 H 0.165 0.835 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -21.098 8.100 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.114 4.114 3 C 0.143 3.857 4 N -0.290 5.290 5 C -0.399 4.399 6 H 0.097 0.903 7 C -0.243 4.243 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.228 1.228 12 H -0.211 1.211 13 C -0.006 4.006 14 C 0.252 3.748 15 O -0.431 6.431 16 N -0.380 5.380 17 C 0.078 3.922 18 C -0.338 4.338 19 S 0.360 5.640 20 C -0.332 4.332 21 C -0.171 4.171 22 C -0.096 4.096 23 C -0.158 4.158 24 H 0.219 0.781 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.245 0.755 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.210 0.790 34 H 0.183 0.817 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.628 -20.730 6.551 21.750 hybrid contribution 0.124 1.325 1.723 2.177 sum 0.752 -19.406 8.274 21.109 Atomic orbital electron populations 1.24607 0.96160 1.07361 1.04485 1.24536 0.95988 0.94476 0.96415 1.17942 0.82411 0.99848 0.85517 1.44327 1.72806 1.01447 1.10433 1.19467 1.25571 0.85526 1.09365 0.90313 1.25656 0.96936 1.00636 1.01086 1.70375 1.22671 1.21814 1.40479 0.85404 0.78782 0.79055 0.77462 1.19524 1.22846 1.21076 1.21333 0.92946 0.87882 0.98487 1.23409 0.92625 0.80408 0.78320 1.90757 1.42006 1.51257 1.59098 1.46286 1.15916 1.18440 1.57390 1.19244 0.87597 0.89866 0.95539 1.24138 1.12756 0.97786 0.99097 1.84451 1.65548 0.96550 1.17448 1.26006 1.06567 1.04682 0.95906 1.20293 1.03781 0.91191 1.01867 1.19191 0.99832 0.96331 0.94268 1.20601 1.02019 0.95733 0.97467 0.78060 0.90865 0.90948 0.94738 0.88175 0.87670 0.75548 0.91953 0.93282 0.79027 0.81747 0.90760 0.89328 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.91 18.79 74.32 1.40 -14.52 16 2 C -0.11 -5.89 10.03 31.13 0.31 -5.58 16 3 C 0.27 13.03 5.45 84.57 0.46 13.49 16 4 N -0.57 -27.85 2.09 -716.94 -1.50 -29.35 16 5 C -0.27 -14.59 9.66 84.03 0.81 -13.78 16 6 H 0.08 4.10 7.90 -2.91 -0.02 4.07 16 7 C -0.05 -2.62 4.85 84.86 0.41 -2.20 16 8 N -0.91 -54.88 9.49 21.65 0.21 -54.67 16 9 Si 0.96 45.43 29.61 68.60 2.03 47.46 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 C 0.12 4.63 6.18 85.63 0.53 5.16 16 14 C 0.47 18.87 7.81 87.66 0.68 19.56 16 15 O -0.56 -29.38 14.44 -3.06 -0.04 -29.42 16 16 N -0.72 -21.80 5.55 -466.79 -2.59 -24.39 16 17 C 0.20 6.06 5.53 85.63 0.47 6.53 16 18 C -0.22 -5.12 5.87 24.59 0.14 -4.97 16 19 S 0.09 1.86 23.33 -56.49 -1.32 0.54 16 20 C -0.20 -2.86 11.23 66.72 0.75 -2.11 16 21 C -0.14 -2.18 9.98 21.22 0.21 -1.97 16 22 C -0.08 -1.63 5.80 -20.92 -0.12 -1.75 16 23 C -0.10 -1.82 9.60 71.23 0.68 -1.14 16 24 H 0.20 9.17 7.80 -4.42 -0.03 9.14 16 25 H 0.07 3.90 6.41 -2.39 -0.02 3.89 16 26 H 0.07 2.90 7.97 -2.39 -0.02 2.88 16 27 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.10 3.27 8.02 -2.39 -0.02 3.26 16 29 H 0.11 3.15 7.95 -2.39 -0.02 3.13 16 30 H 0.41 9.58 8.46 -92.71 -0.78 8.80 16 31 H 0.06 2.05 7.33 -2.39 -0.02 2.03 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.23 8.13 -2.39 -0.02 1.21 16 37 H 0.05 1.21 7.26 -2.38 -0.02 1.19 16 Total: -1.00 -75.04 334.55 3.83 -71.21 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.30 Total: 21.89 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 6.75 Total: -3.27 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -3.88 Total: -108.41 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.04 Total: -29.42 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -75.04 3.83 -71.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281499978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.267 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds