Wall clock time and date at job start Tue Mar 31 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46827 * 232.95139 * 3 2 1 5 5 C 1.36894 * 119.99583 * 262.98140 * 4 3 2 6 6 H 1.07999 * 119.99591 * 200.84316 * 5 4 3 7 7 C 1.39003 * 120.00227 * 20.83910 * 5 4 3 8 8 N 1.31400 * 119.99768 * 22.46936 * 7 5 4 9 9 Si 1.86800 * 120.00025 * 202.46485 * 7 5 4 10 10 H 1.48504 * 109.47059 * 90.00366 * 9 7 5 11 11 H 1.48499 * 109.47046 * 210.00026 * 9 7 5 12 12 H 1.48494 * 109.46910 * 330.00323 * 9 7 5 13 13 C 1.34779 * 119.99880 * 82.98495 * 4 3 2 14 14 O 1.21732 * 119.99384 * 184.12736 * 13 4 3 15 15 C 1.46561 * 120.00149 * 4.12598 * 13 4 3 16 16 S 1.76208 * 126.17940 * 344.71515 * 15 13 4 17 17 C 1.70924 * 90.37261 * 180.02562 * 16 15 13 18 18 C 1.50699 * 124.69994 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47307 * 269.72007 * 18 17 16 20 20 C 1.52998 * 109.47180 * 180.02562 * 19 18 17 21 21 N 1.29373 * 110.59453 * 359.66536 * 17 16 15 22 22 C 1.30937 * 117.47020 * 0.26261 * 21 17 16 23 23 C 1.50699 * 123.04268 * 179.97438 * 22 21 17 24 24 H 4.40643 * 5.51345 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47211 * 112.94684 * 3 2 1 26 26 H 1.08999 * 109.47085 * 352.95220 * 3 2 1 27 27 H 0.97005 * 119.99751 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46867 * 149.72229 * 18 17 16 29 29 H 1.09004 * 109.47260 * 29.72078 * 18 17 16 30 30 H 1.09002 * 109.46976 * 60.00288 * 19 18 17 31 31 H 1.09004 * 109.47017 * 300.00219 * 19 18 17 32 32 H 1.08993 * 109.47013 * 60.00344 * 20 19 18 33 33 H 1.09003 * 109.46763 * 180.02562 * 20 19 18 34 34 H 1.09004 * 109.47098 * 299.99893 * 20 19 18 35 35 H 1.09001 * 109.47031 * 90.02698 * 23 22 21 36 36 H 1.09001 * 109.47010 * 210.02399 * 23 22 21 37 37 H 1.08996 * 109.46931 * 330.02996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8331 1.1024 5 6 3.4980 2.1320 0.8699 6 1 4.1550 2.6404 1.5600 7 6 3.0222 2.7967 -0.2544 8 7 1.9219 2.3861 -0.8437 9 14 3.9470 4.2735 -0.9275 10 1 4.9473 3.8181 -1.9261 11 1 2.9886 5.2042 -1.5759 12 1 4.6402 4.9722 0.1844 13 6 3.2243 0.3199 2.3454 14 8 3.5578 1.0317 3.2749 15 6 2.9212 -1.0950 2.5779 16 16 2.0766 -2.1736 1.4697 17 6 2.2317 -3.4594 2.5851 18 6 1.7145 -4.8569 2.3607 19 6 0.2835 -4.9626 2.8918 20 6 -0.2413 -6.3817 2.6645 21 7 2.8604 -3.0682 3.6460 22 6 3.2488 -1.8185 3.6915 23 6 3.9891 -1.2304 4.8650 24 1 -1.0502 0.0000 -0.0004 25 1 3.0092 0.4015 -0.9463 26 1 3.0098 -1.0191 0.1261 27 1 1.5900 2.8497 -1.6285 28 1 2.3508 -5.5686 2.8868 29 1 1.7236 -5.0808 1.2940 30 1 -0.3527 -4.2509 2.3657 31 1 0.2744 -4.7387 3.9585 32 1 0.3950 -7.0930 3.1909 33 1 -1.2610 -6.4568 3.0425 34 1 -0.2322 -6.6060 1.5978 35 1 5.0620 -1.3504 4.7148 36 1 3.7506 -0.1703 4.9508 37 1 3.6903 -1.7452 5.7781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281534220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:22 Heat of formation + Delta-G solvation = 66.322977 kcal Electronic energy + Delta-G solvation = -21038.151548 eV Core-core repulsion = 17909.365433 eV Total energy + Delta-G solvation = -3128.786115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.54556 -38.45223 -35.41532 -35.03376 -32.45372 -31.44121 -31.14026 -28.02960 -27.84241 -26.64223 -24.65997 -23.01978 -21.23253 -21.00854 -18.30334 -18.02231 -17.46517 -16.81025 -15.88821 -15.11805 -14.97875 -14.72827 -14.52912 -13.99357 -13.93564 -13.43262 -13.19930 -12.95471 -12.63697 -12.44765 -12.12188 -11.99630 -11.81995 -11.71345 -11.45898 -11.19767 -11.16014 -10.78778 -10.75026 -10.62241 -10.47755 -9.62126 -9.53727 -9.25257 -9.03886 -8.64898 -8.44689 -8.16278 -7.89435 -6.54840 -4.01913 0.86594 1.82217 2.22517 3.00143 3.14068 3.16232 3.20643 3.59717 3.88154 4.04535 4.12869 4.37400 4.78422 4.92114 4.93416 4.97958 5.09705 5.26473 5.48358 5.55537 5.65041 5.68950 5.71038 5.73963 5.94776 6.06148 6.08937 6.16434 6.21459 6.36769 6.43079 6.45544 6.83791 6.94013 7.36571 7.84659 8.20789 8.25698 8.65934 8.93103 9.10629 9.71271 10.44899 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.005223 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.246514 B = 5359.974083 C = 6311.530154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.125 4.125 3 C 0.219 3.781 4 N -0.420 5.420 5 C -0.309 4.309 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.846 5.846 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.512 3.488 14 O -0.567 6.567 15 C -0.255 4.255 16 S 0.188 5.812 17 C -0.012 4.012 18 C -0.037 4.037 19 C -0.119 4.119 20 C -0.150 4.150 21 N -0.476 5.476 22 C 0.103 3.897 23 C -0.082 4.082 24 H 0.203 0.797 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.273 0.727 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -12.479 -0.212 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.128 4.128 3 C 0.094 3.906 4 N -0.136 5.136 5 C -0.437 4.437 6 H 0.128 0.872 7 C -0.173 4.173 8 N -0.481 5.481 9 Si 0.752 3.248 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.453 6.453 15 C -0.379 4.379 16 S 0.448 5.552 17 C -0.286 4.286 18 C -0.078 4.078 19 C -0.158 4.158 20 C -0.207 4.207 21 N -0.190 5.190 22 C -0.035 4.035 23 C -0.141 4.141 24 H 0.220 0.780 25 H 0.134 0.866 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.713 -12.397 -0.536 12.702 hybrid contribution 0.377 1.080 0.132 1.151 sum -2.336 -11.317 -0.404 11.563 Atomic orbital electron populations 1.24264 0.95274 1.04040 1.01470 1.22701 0.94041 0.96879 0.99209 1.18494 0.85247 0.92660 0.94182 1.43615 1.54063 1.11344 1.04604 1.19762 1.27010 0.87622 1.09258 0.87212 1.25440 0.94888 0.99300 0.97682 1.70090 1.16499 1.41159 1.20383 0.85918 0.79243 0.80348 0.79294 1.20025 1.20833 1.19060 1.16537 0.85587 0.84356 0.83378 1.90602 1.54138 1.59512 1.41050 1.26137 1.11286 1.00523 0.99973 1.84621 1.51882 1.00243 1.18440 1.27523 1.02535 1.02913 0.95596 1.20188 0.96561 0.89220 1.01804 1.21528 0.94708 0.97557 1.02010 1.21758 1.00896 0.96346 1.01712 1.65919 1.13044 1.15740 1.24346 1.20671 0.99263 0.87264 0.96280 1.20523 0.98312 1.02797 0.92435 0.78007 0.86587 0.91271 0.91623 0.89581 0.90149 0.91631 0.91424 0.92611 0.92570 0.92596 0.91358 0.87894 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.58 19.25 29.55 0.57 -4.01 16 2 C -0.13 -2.70 8.90 -37.12 -0.33 -3.04 16 3 C 0.22 4.80 4.73 -6.83 -0.03 4.77 16 4 N -0.42 -10.59 2.59 -119.46 -0.31 -10.90 16 5 C -0.31 -8.21 9.22 -15.01 -0.14 -8.34 16 6 H 0.11 3.04 7.48 -52.49 -0.39 2.65 16 7 C 0.03 0.84 4.80 -17.45 -0.08 0.76 16 8 N -0.85 -21.18 9.72 55.50 0.54 -20.64 16 9 Si 0.93 19.43 29.61 -169.99 -5.03 14.40 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.51 12.95 7.45 -12.90 -0.10 12.85 16 14 O -0.57 -15.64 14.12 5.16 0.07 -15.56 16 15 C -0.25 -5.53 6.20 -36.75 -0.23 -5.76 16 16 S 0.19 3.32 16.58 -107.50 -1.78 1.53 16 17 C -0.01 -0.19 6.63 -13.31 -0.09 -0.28 16 18 C -0.04 -0.45 5.79 -27.88 -0.16 -0.61 16 19 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 20 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 21 N -0.48 -8.91 10.49 -7.47 -0.08 -8.99 16 22 C 0.10 2.09 6.83 -83.50 -0.57 1.52 16 23 C -0.08 -1.51 9.91 36.01 0.36 -1.15 16 24 H 0.20 3.22 7.80 -54.08 -0.42 2.80 16 25 H 0.12 2.60 6.64 -51.93 -0.34 2.25 16 26 H 0.07 1.36 4.65 -24.70 -0.11 1.24 16 27 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 2.12 5.84 -51.93 -0.30 1.81 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -30.12 323.99 -6.82 -36.94 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.52 Total: 3.99 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.59 Total: -5.64 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.15 Total: -40.54 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.07 Total: -15.56 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.78 Total: 1.53 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.12 -6.82 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.265 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds