Wall clock time and date at job start Tue Mar 31 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46827 * 232.95139 * 3 2 1 5 5 C 1.36894 * 119.99583 * 262.98140 * 4 3 2 6 6 H 1.07999 * 119.99591 * 200.84316 * 5 4 3 7 7 C 1.39003 * 120.00227 * 20.83910 * 5 4 3 8 8 N 1.31400 * 119.99768 * 22.46936 * 7 5 4 9 9 Si 1.86800 * 120.00025 * 202.46485 * 7 5 4 10 10 H 1.48504 * 109.47059 * 90.00366 * 9 7 5 11 11 H 1.48499 * 109.47046 * 210.00026 * 9 7 5 12 12 H 1.48494 * 109.46910 * 330.00323 * 9 7 5 13 13 C 1.34779 * 119.99880 * 82.98495 * 4 3 2 14 14 O 1.21732 * 119.99384 * 184.12736 * 13 4 3 15 15 C 1.46561 * 120.00149 * 4.12598 * 13 4 3 16 16 S 1.76208 * 126.17940 * 344.71515 * 15 13 4 17 17 C 1.70924 * 90.37261 * 180.02562 * 16 15 13 18 18 C 1.50699 * 124.69994 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47307 * 269.72007 * 18 17 16 20 20 C 1.52998 * 109.47180 * 180.02562 * 19 18 17 21 21 N 1.29373 * 110.59453 * 359.66536 * 17 16 15 22 22 C 1.30937 * 117.47020 * 0.26261 * 21 17 16 23 23 C 1.50699 * 123.04268 * 179.97438 * 22 21 17 24 24 H 4.40643 * 5.51345 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47211 * 112.94684 * 3 2 1 26 26 H 1.08999 * 109.47085 * 352.95220 * 3 2 1 27 27 H 0.97005 * 119.99751 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46867 * 149.72229 * 18 17 16 29 29 H 1.09004 * 109.47260 * 29.72078 * 18 17 16 30 30 H 1.09002 * 109.46976 * 60.00288 * 19 18 17 31 31 H 1.09004 * 109.47017 * 300.00219 * 19 18 17 32 32 H 1.08993 * 109.47013 * 60.00344 * 20 19 18 33 33 H 1.09003 * 109.46763 * 180.02562 * 20 19 18 34 34 H 1.09004 * 109.47098 * 299.99893 * 20 19 18 35 35 H 1.09001 * 109.47031 * 90.02698 * 23 22 21 36 36 H 1.09001 * 109.47010 * 210.02399 * 23 22 21 37 37 H 1.08996 * 109.46931 * 330.02996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8331 1.1024 5 6 3.4980 2.1320 0.8699 6 1 4.1550 2.6404 1.5600 7 6 3.0222 2.7967 -0.2544 8 7 1.9219 2.3861 -0.8437 9 14 3.9470 4.2735 -0.9275 10 1 4.9473 3.8181 -1.9261 11 1 2.9886 5.2042 -1.5759 12 1 4.6402 4.9722 0.1844 13 6 3.2243 0.3199 2.3454 14 8 3.5578 1.0317 3.2749 15 6 2.9212 -1.0950 2.5779 16 16 2.0766 -2.1736 1.4697 17 6 2.2317 -3.4594 2.5851 18 6 1.7145 -4.8569 2.3607 19 6 0.2835 -4.9626 2.8918 20 6 -0.2413 -6.3817 2.6645 21 7 2.8604 -3.0682 3.6460 22 6 3.2488 -1.8185 3.6915 23 6 3.9891 -1.2304 4.8650 24 1 -1.0502 0.0000 -0.0004 25 1 3.0092 0.4015 -0.9463 26 1 3.0098 -1.0191 0.1261 27 1 1.5900 2.8497 -1.6285 28 1 2.3508 -5.5686 2.8868 29 1 1.7236 -5.0808 1.2940 30 1 -0.3527 -4.2509 2.3657 31 1 0.2744 -4.7387 3.9585 32 1 0.3950 -7.0930 3.1909 33 1 -1.2610 -6.4568 3.0425 34 1 -0.2322 -6.6060 1.5978 35 1 5.0620 -1.3504 4.7148 36 1 3.7506 -0.1703 4.9508 37 1 3.6903 -1.7452 5.7781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281534220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:22 Heat of formation + Delta-G solvation = 48.778124 kcal Electronic energy + Delta-G solvation = -21038.912350 eV Core-core repulsion = 17909.365433 eV Total energy + Delta-G solvation = -3129.546917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15218 -40.17744 -37.20143 -36.12206 -34.24665 -33.19248 -32.52100 -29.63624 -28.97228 -28.35802 -26.48441 -24.19135 -22.77018 -22.17673 -19.95229 -19.74914 -19.00804 -18.54443 -17.53941 -16.83082 -16.34585 -16.19286 -15.84488 -15.57619 -15.42838 -14.88102 -14.67880 -14.36214 -14.23864 -13.98429 -13.63852 -13.40506 -13.16110 -12.93133 -12.84973 -12.59756 -12.50437 -12.25246 -12.15178 -12.05301 -11.61787 -11.31694 -11.20340 -10.98559 -10.63816 -10.36200 -10.09145 -9.99061 -9.44838 -8.42812 -6.01750 -0.63732 0.32813 0.74703 1.35297 1.42692 1.53850 1.55837 1.93263 2.21312 2.33132 2.34066 2.95961 3.02583 3.16195 3.67928 3.90344 3.96569 4.11693 4.12511 4.18509 4.42386 4.54986 4.69480 4.70273 4.71663 4.79690 4.89422 4.93026 4.97824 5.23765 5.28758 5.30341 5.38040 5.44944 5.46524 5.94048 6.31480 6.73647 7.00424 7.05539 7.21969 7.81752 8.55862 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.005223 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.246514 B = 5359.974083 C = 6311.530154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C 0.223 3.777 4 N -0.433 5.433 5 C -0.353 4.353 6 H 0.082 0.918 7 C 0.009 3.991 8 N -0.859 5.859 9 Si 0.990 3.010 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.608 6.608 15 C -0.308 4.308 16 S 0.224 5.776 17 C 0.016 3.984 18 C -0.041 4.041 19 C -0.117 4.117 20 C -0.145 4.145 21 N -0.493 5.493 22 C 0.111 3.889 23 C -0.080 4.080 24 H 0.238 0.762 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.278 0.722 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 -14.843 -1.252 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.168 4.168 3 C 0.099 3.901 4 N -0.149 5.149 5 C -0.480 4.480 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.494 5.494 9 Si 0.813 3.187 10 H -0.186 1.186 11 H -0.200 1.200 12 H -0.201 1.201 13 C 0.294 3.706 14 O -0.497 6.497 15 C -0.432 4.432 16 S 0.485 5.515 17 C -0.258 4.258 18 C -0.081 4.081 19 C -0.156 4.156 20 C -0.202 4.202 21 N -0.208 5.208 22 C -0.027 4.027 23 C -0.139 4.139 24 H 0.255 0.745 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.965 -14.775 -1.617 15.383 hybrid contribution 0.662 1.615 0.530 1.824 sum -3.303 -13.161 -1.087 13.613 Atomic orbital electron populations 1.25145 0.96177 1.02165 0.99574 1.22851 0.94438 0.98614 1.00944 1.18488 0.85950 0.93064 0.92571 1.43752 1.54396 1.11352 1.05368 1.19654 1.28751 0.89132 1.10470 0.90030 1.26117 0.95199 1.01450 0.96928 1.70156 1.16821 1.41982 1.20410 0.84990 0.78225 0.77137 0.78350 1.18587 1.19981 1.20065 1.17063 0.84704 0.85794 0.83040 1.90546 1.55679 1.61240 1.42227 1.25840 1.14938 0.99899 1.02485 1.84318 1.50760 0.99064 1.17338 1.28449 0.99102 1.04257 0.94026 1.20526 0.97260 0.86351 1.03966 1.21518 0.93748 0.99379 1.00968 1.21724 1.01274 0.94452 1.02752 1.66062 1.14640 1.14745 1.25392 1.21005 0.97928 0.87831 0.95971 1.20495 0.98911 1.01360 0.93125 0.74504 0.87779 0.89388 0.91162 0.88134 0.87381 0.92029 0.92817 0.91852 0.91914 0.91346 0.90243 0.90472 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.03 19.25 74.32 1.43 -6.59 16 2 C -0.17 -7.08 8.90 31.13 0.28 -6.81 16 3 C 0.22 9.96 4.73 84.57 0.40 10.36 16 4 N -0.43 -22.79 2.59 -650.07 -1.69 -24.48 16 5 C -0.35 -19.72 9.22 84.09 0.78 -18.95 16 6 H 0.08 4.88 7.48 -2.91 -0.02 4.86 16 7 C 0.01 0.46 4.80 84.94 0.41 0.86 16 8 N -0.86 -43.27 9.72 21.67 0.21 -43.06 16 9 Si 0.99 40.51 29.61 68.60 2.03 42.54 16 10 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 13 C 0.50 26.71 7.45 86.41 0.64 27.36 16 14 O -0.61 -35.73 14.12 -4.45 -0.06 -35.80 16 15 C -0.31 -13.56 6.20 24.10 0.15 -13.42 16 16 S 0.22 7.60 16.58 -56.49 -0.94 6.66 16 17 C 0.02 0.48 6.63 88.47 0.59 1.07 16 18 C -0.04 -0.82 5.79 29.85 0.17 -0.65 16 19 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 20 C -0.14 -1.88 9.91 71.98 0.71 -1.17 16 21 N -0.49 -17.68 10.49 -177.54 -1.86 -19.55 16 22 C 0.11 4.52 6.83 42.35 0.29 4.81 16 23 C -0.08 -2.99 9.91 71.24 0.71 -2.29 16 24 H 0.24 6.81 7.80 -4.41 -0.03 6.77 16 25 H 0.10 4.79 6.64 -2.39 -0.02 4.77 16 26 H 0.09 3.47 4.65 -19.70 -0.09 3.38 16 27 H 0.28 13.09 8.31 -92.70 -0.77 12.32 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.08 3.33 5.84 -2.39 -0.01 3.32 16 37 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -67.97 323.99 5.43 -62.54 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.00 Total: 18.56 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 6.73 Total: -7.41 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -3.34 Total: -87.09 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.06 Total: -35.80 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 7.60 SS G_CDS: -0.94 Total: 6.66 kcal Total: -67.97 5.43 -62.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.320 kcal (2) G-P(sol) polarization free energy of solvation -67.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds