Wall clock time and date at job start Tue Mar 31 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47068 * 167.08383 * 3 2 1 5 5 C 1.36952 * 119.99883 * 265.88137 * 4 3 2 6 6 H 1.08002 * 120.00455 * 198.10333 * 5 4 3 7 7 C 1.38986 * 119.99945 * 18.38209 * 5 4 3 8 8 N 1.31411 * 119.99842 * 26.19672 * 7 5 4 9 9 Si 1.86796 * 119.99844 * 206.19576 * 7 5 4 10 10 H 1.48505 * 109.47568 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47036 * 120.00032 * 9 7 5 12 12 H 1.48502 * 109.47368 * 239.99979 * 9 7 5 13 13 C 1.34774 * 120.00264 * 85.88007 * 4 3 2 14 14 O 1.21668 * 120.00246 * 174.39680 * 13 4 3 15 15 C 1.47172 * 119.99879 * 354.39996 * 13 4 3 16 16 C 1.35300 * 123.15220 * 174.49361 * 15 13 4 17 17 S 1.70942 * 108.81940 * 179.97438 * 16 15 13 18 18 C 1.70766 * 91.13753 * 0.28071 * 17 16 15 19 19 C 1.50697 * 124.71181 * 179.84999 * 18 17 16 20 20 C 1.52999 * 109.47290 * 269.98430 * 19 18 17 21 21 C 1.53002 * 109.46869 * 175.00250 * 20 19 18 22 22 C 1.53001 * 109.47024 * 294.99489 * 20 19 18 23 23 N 1.28645 * 110.57515 * 359.83952 * 18 17 16 24 24 H 4.40637 * 5.51396 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47416 * 47.08340 * 3 2 1 26 26 H 1.09008 * 109.47460 * 287.08135 * 3 2 1 27 27 H 0.97003 * 119.99630 * 180.02562 * 8 7 5 28 28 H 1.08003 * 125.58973 * 0.03623 * 16 15 13 29 29 H 1.09007 * 109.47064 * 29.98219 * 19 18 17 30 30 H 1.08997 * 109.47046 * 149.97945 * 19 18 17 31 31 H 1.08997 * 109.47404 * 54.99551 * 20 19 18 32 32 H 1.08997 * 109.47679 * 59.99469 * 21 20 19 33 33 H 1.09006 * 109.46962 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.47037 * 299.99553 * 21 20 19 35 35 H 1.09005 * 109.46868 * 60.00080 * 22 20 19 36 36 H 1.08996 * 109.47469 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.47665 * 300.00746 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3471 -0.3087 5 6 3.4421 1.6844 -1.5997 6 1 4.0632 2.5451 -1.7994 7 6 2.9510 0.9225 -2.6533 8 7 1.8369 0.2409 -2.5078 9 14 3.8747 0.8673 -4.2760 10 1 5.0907 1.7145 -4.1826 11 1 4.2693 -0.5331 -4.5735 12 1 2.9986 1.3759 -5.3618 13 6 3.2789 2.2540 0.6777 14 8 3.7791 3.3372 0.4395 15 6 2.8324 1.9339 2.0430 16 6 3.0440 2.7501 3.1011 17 16 2.3780 2.0252 4.4986 18 6 1.8634 0.6721 3.5930 19 6 1.1323 -0.5153 4.1644 20 6 2.1455 -1.5694 4.6153 21 6 1.4111 -2.7192 5.3080 22 6 2.8992 -2.1063 3.3969 23 7 2.1863 0.8073 2.3551 24 1 -1.0502 -0.0004 0.0003 25 1 3.0097 -0.6989 -0.7526 26 1 3.0095 -0.3010 0.9824 27 1 1.4944 -0.2911 -3.2430 28 1 3.5498 3.7039 3.0680 29 1 0.5344 -0.1973 5.0186 30 1 0.4796 -0.9412 3.4025 31 1 2.8534 -1.1189 5.3110 32 1 0.7032 -3.1697 4.6123 33 1 2.1329 -3.4704 5.6288 34 1 0.8740 -2.3367 6.1760 35 1 3.4224 -1.2872 2.9034 36 1 3.6207 -2.8576 3.7180 37 1 2.1914 -2.5568 2.7012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281553402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:40 Heat of formation + Delta-G solvation = 74.781527 kcal Electronic energy + Delta-G solvation = -21476.662101 eV Core-core repulsion = 18348.242776 eV Total energy + Delta-G solvation = -3128.419325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92998 -37.84912 -36.17854 -35.12185 -32.03831 -31.08598 -30.65482 -27.54352 -27.08583 -26.49567 -25.48912 -23.52233 -21.00278 -19.99181 -18.96955 -17.85517 -17.76800 -16.43955 -15.58213 -15.37113 -14.93114 -14.79390 -14.30577 -13.94573 -13.88852 -13.57529 -13.12386 -12.77925 -12.36084 -12.23315 -12.15131 -12.08366 -11.81326 -11.71338 -11.36344 -11.09576 -10.98030 -10.87162 -10.70615 -10.49812 -10.34414 -9.31736 -9.23617 -9.15917 -9.01898 -8.70363 -8.47425 -8.32798 -7.86354 -6.40827 -3.85339 1.01605 1.67266 2.07033 2.68618 3.16630 3.23771 3.31382 3.94102 4.18376 4.25649 4.35627 4.45276 4.83918 4.89267 4.95572 5.05325 5.17541 5.46963 5.56446 5.60086 5.66751 5.74524 5.81356 5.86937 5.92030 5.94504 5.99194 6.12315 6.27451 6.37137 6.50232 6.74074 6.85147 7.24515 7.49848 7.93860 8.08290 8.41112 9.07778 9.12842 9.30810 9.90140 10.56633 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.005727 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.788412 B = 4887.553151 C = 5769.923859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.072 4.072 3 C 0.233 3.767 4 N -0.409 5.409 5 C -0.318 4.318 6 H 0.109 0.891 7 C 0.036 3.964 8 N -0.835 5.835 9 Si 0.918 3.082 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.500 3.500 14 O -0.586 6.586 15 C 0.046 3.954 16 C -0.248 4.248 17 S 0.144 5.856 18 C 0.028 3.972 19 C -0.037 4.037 20 C -0.089 4.089 21 C -0.145 4.145 22 C -0.149 4.149 23 N -0.422 5.422 24 H 0.191 0.809 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.270 0.730 28 H 0.180 0.820 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 -6.338 14.648 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.074 4.074 3 C 0.110 3.890 4 N -0.123 5.123 5 C -0.446 4.446 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.470 5.470 9 Si 0.744 3.256 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.472 6.472 15 C -0.087 4.087 16 C -0.390 4.390 17 S 0.399 5.601 18 C -0.252 4.252 19 C -0.077 4.077 20 C -0.109 4.109 21 C -0.203 4.203 22 C -0.206 4.206 23 N -0.137 5.137 24 H 0.209 0.791 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.197 0.803 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.697 -6.075 14.999 16.271 hybrid contribution 0.177 0.219 -1.910 1.930 sum -1.520 -5.856 13.090 14.420 Atomic orbital electron populations 1.23981 0.95103 1.02604 1.08526 1.22634 0.93726 0.97786 0.93219 1.18503 0.85120 0.85317 1.00033 1.43644 1.52924 1.09077 1.06679 1.19772 1.29699 1.14944 0.80135 0.87381 1.25384 0.94752 0.97214 0.99769 1.70212 1.15182 1.28311 1.33320 0.86010 0.80159 0.78282 0.81165 1.18924 1.20397 1.20722 1.16845 0.86911 0.84857 0.82689 1.90629 1.50321 1.23730 1.82521 1.20983 1.00460 0.90199 0.97079 1.26283 1.09884 1.07327 0.95472 1.82416 1.51035 1.13767 1.12869 1.27153 1.04575 1.00796 0.92676 1.20334 0.96687 0.90179 1.00544 1.21096 0.96862 0.95137 0.97756 1.21827 1.00385 0.97870 1.00187 1.21874 1.00227 1.01154 0.97329 1.67457 1.11626 1.19731 1.14921 0.79138 0.89482 0.89183 0.91909 0.80303 0.90108 0.88615 0.91201 0.92341 0.92515 0.92743 0.91970 0.93099 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.31 19.25 29.55 0.57 -5.74 16 2 C -0.07 -1.71 9.60 -37.13 -0.36 -2.06 16 3 C 0.23 5.52 4.75 -6.83 -0.03 5.49 16 4 N -0.41 -10.90 2.59 -119.24 -0.31 -11.21 16 5 C -0.32 -8.93 9.29 -14.99 -0.14 -9.07 16 6 H 0.11 3.17 7.40 -52.49 -0.39 2.79 16 7 C 0.04 0.96 4.72 -17.45 -0.08 0.87 16 8 N -0.84 -22.20 9.73 55.50 0.54 -21.66 16 9 Si 0.92 20.30 29.63 -169.99 -5.04 15.26 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.50 13.16 7.55 -12.63 -0.10 13.07 16 14 O -0.59 -16.99 16.37 5.22 0.09 -16.90 16 15 C 0.05 1.00 6.41 -84.53 -0.54 0.46 16 16 C -0.25 -4.50 10.62 29.69 0.32 -4.18 16 17 S 0.14 1.95 22.92 -107.50 -2.46 -0.52 16 18 C 0.03 0.42 5.84 -13.61 -0.08 0.34 16 19 C -0.04 -0.42 5.26 -27.88 -0.15 -0.57 16 20 C -0.09 -0.91 2.91 -90.62 -0.26 -1.18 16 21 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 22 C -0.15 -1.80 8.99 37.16 0.33 -1.47 16 23 N -0.42 -8.03 4.92 -8.52 -0.04 -8.07 16 24 H 0.19 3.59 7.80 -54.08 -0.42 3.17 16 25 H 0.09 2.13 6.77 -51.93 -0.35 1.78 16 26 H 0.09 1.94 4.98 -51.92 -0.26 1.68 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.18 3.14 8.04 -52.48 -0.42 2.72 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.91 6.06 -51.93 -0.31 0.59 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -31.76 326.35 -7.16 -38.91 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.67 Total: 4.16 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.18 Total: -4.90 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.19 Total: -40.94 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.09 Total: -16.90 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.04 Total: 15.26 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.46 Total: -0.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.76 -7.16 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281553402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.696 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds