Wall clock time and date at job start Tue Mar 31 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47068 * 167.08383 * 3 2 1 5 5 C 1.36952 * 119.99883 * 265.88137 * 4 3 2 6 6 H 1.08002 * 120.00455 * 198.10333 * 5 4 3 7 7 C 1.38986 * 119.99945 * 18.38209 * 5 4 3 8 8 N 1.31411 * 119.99842 * 26.19672 * 7 5 4 9 9 Si 1.86796 * 119.99844 * 206.19576 * 7 5 4 10 10 H 1.48505 * 109.47568 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47036 * 120.00032 * 9 7 5 12 12 H 1.48502 * 109.47368 * 239.99979 * 9 7 5 13 13 C 1.34774 * 120.00264 * 85.88007 * 4 3 2 14 14 O 1.21668 * 120.00246 * 174.39680 * 13 4 3 15 15 C 1.47172 * 119.99879 * 354.39996 * 13 4 3 16 16 C 1.35300 * 123.15220 * 174.49361 * 15 13 4 17 17 S 1.70942 * 108.81940 * 179.97438 * 16 15 13 18 18 C 1.70766 * 91.13753 * 0.28071 * 17 16 15 19 19 C 1.50697 * 124.71181 * 179.84999 * 18 17 16 20 20 C 1.52999 * 109.47290 * 269.98430 * 19 18 17 21 21 C 1.53002 * 109.46869 * 175.00250 * 20 19 18 22 22 C 1.53001 * 109.47024 * 294.99489 * 20 19 18 23 23 N 1.28645 * 110.57515 * 359.83952 * 18 17 16 24 24 H 4.40637 * 5.51396 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47416 * 47.08340 * 3 2 1 26 26 H 1.09008 * 109.47460 * 287.08135 * 3 2 1 27 27 H 0.97003 * 119.99630 * 180.02562 * 8 7 5 28 28 H 1.08003 * 125.58973 * 0.03623 * 16 15 13 29 29 H 1.09007 * 109.47064 * 29.98219 * 19 18 17 30 30 H 1.08997 * 109.47046 * 149.97945 * 19 18 17 31 31 H 1.08997 * 109.47404 * 54.99551 * 20 19 18 32 32 H 1.08997 * 109.47679 * 59.99469 * 21 20 19 33 33 H 1.09006 * 109.46962 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.47037 * 299.99553 * 21 20 19 35 35 H 1.09005 * 109.46868 * 60.00080 * 22 20 19 36 36 H 1.08996 * 109.47469 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.47665 * 300.00746 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3471 -0.3087 5 6 3.4421 1.6844 -1.5997 6 1 4.0632 2.5451 -1.7994 7 6 2.9510 0.9225 -2.6533 8 7 1.8369 0.2409 -2.5078 9 14 3.8747 0.8673 -4.2760 10 1 5.0907 1.7145 -4.1826 11 1 4.2693 -0.5331 -4.5735 12 1 2.9986 1.3759 -5.3618 13 6 3.2789 2.2540 0.6777 14 8 3.7791 3.3372 0.4395 15 6 2.8324 1.9339 2.0430 16 6 3.0440 2.7501 3.1011 17 16 2.3780 2.0252 4.4986 18 6 1.8634 0.6721 3.5930 19 6 1.1323 -0.5153 4.1644 20 6 2.1455 -1.5694 4.6153 21 6 1.4111 -2.7192 5.3080 22 6 2.8992 -2.1063 3.3969 23 7 2.1863 0.8073 2.3551 24 1 -1.0502 -0.0004 0.0003 25 1 3.0097 -0.6989 -0.7526 26 1 3.0095 -0.3010 0.9824 27 1 1.4944 -0.2911 -3.2430 28 1 3.5498 3.7039 3.0680 29 1 0.5344 -0.1973 5.0186 30 1 0.4796 -0.9412 3.4025 31 1 2.8534 -1.1189 5.3110 32 1 0.7032 -3.1697 4.6123 33 1 2.1329 -3.4704 5.6288 34 1 0.8740 -2.3367 6.1760 35 1 3.4224 -1.2872 2.9034 36 1 3.6207 -2.8576 3.7180 37 1 2.1914 -2.5568 2.7012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281553402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:40 Heat of formation + Delta-G solvation = 56.359949 kcal Electronic energy + Delta-G solvation = -21477.460920 eV Core-core repulsion = 18348.242776 eV Total energy + Delta-G solvation = -3129.218144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49009 -39.56516 -37.28801 -36.98974 -34.01010 -32.96724 -31.92165 -28.79762 -28.31629 -27.89401 -27.30685 -25.14603 -22.36501 -20.98190 -20.52146 -19.68869 -19.40507 -18.30992 -17.15742 -16.93246 -16.37942 -16.27307 -15.94046 -15.44732 -15.20204 -14.76053 -14.51062 -14.46655 -14.08531 -13.90168 -13.62338 -13.26197 -12.95231 -12.84006 -12.77863 -12.63052 -12.53947 -12.15743 -11.93129 -11.73251 -11.52933 -11.20781 -11.04735 -10.70245 -10.58532 -10.40760 -10.22745 -9.87729 -9.66518 -8.40806 -5.97252 -0.35090 0.43026 0.73060 1.10963 1.40086 1.43573 1.55215 2.12261 2.34113 2.44837 2.61956 3.00980 3.05033 3.38516 3.92897 4.02652 4.05289 4.09185 4.22336 4.37726 4.48186 4.65051 4.78409 4.82613 4.85892 4.91740 4.99901 5.10333 5.12177 5.20749 5.35396 5.40660 5.51089 5.53321 5.55699 5.97972 6.34084 6.70696 7.04566 7.29279 7.35407 7.89968 8.55874 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.005727 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.788412 B = 4887.553151 C = 5769.923859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.102 4.102 3 C 0.244 3.756 4 N -0.422 5.422 5 C -0.364 4.364 6 H 0.079 0.921 7 C 0.009 3.991 8 N -0.852 5.852 9 Si 0.987 3.013 10 H -0.272 1.272 11 H -0.262 1.262 12 H -0.275 1.275 13 C 0.487 3.513 14 O -0.632 6.632 15 C 0.011 3.989 16 C -0.261 4.261 17 S 0.269 5.731 18 C 0.019 3.981 19 C -0.037 4.037 20 C -0.083 4.083 21 C -0.140 4.140 22 C -0.149 4.149 23 N -0.449 5.449 24 H 0.223 0.777 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.276 0.724 28 H 0.178 0.822 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 -7.637 17.153 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.103 4.103 3 C 0.122 3.878 4 N -0.137 5.137 5 C -0.491 4.491 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.486 5.486 9 Si 0.810 3.190 10 H -0.196 1.196 11 H -0.186 1.186 12 H -0.200 1.200 13 C 0.276 3.724 14 O -0.521 6.521 15 C -0.123 4.123 16 C -0.403 4.403 17 S 0.527 5.473 18 C -0.260 4.260 19 C -0.078 4.078 20 C -0.103 4.103 21 C -0.198 4.198 22 C -0.206 4.206 23 N -0.165 5.165 24 H 0.240 0.760 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.195 0.805 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.024 -7.410 17.539 19.279 hybrid contribution 0.530 0.654 -2.468 2.607 sum -2.494 -6.757 15.071 16.704 Atomic orbital electron populations 1.24757 0.95995 1.01182 1.07306 1.22790 0.94125 0.99058 0.94366 1.18431 0.85636 0.83588 1.00174 1.43810 1.53266 1.10173 1.06418 1.19674 1.31689 1.15912 0.81875 0.90329 1.26139 0.95004 0.96090 1.02540 1.70274 1.15607 1.28232 1.34488 0.85006 0.78460 0.78823 0.76741 1.19613 1.18611 1.20049 1.17613 0.85813 0.84268 0.84735 1.90555 1.52077 1.25443 1.83985 1.20413 1.03675 0.92774 0.95452 1.26611 1.09053 1.07057 0.97612 1.81917 1.47319 1.10148 1.07929 1.27841 1.03520 1.02501 0.92173 1.20567 0.96797 0.89135 1.01257 1.21094 0.96709 0.95555 0.96966 1.21788 1.00401 0.97086 1.00493 1.21870 1.00313 1.00422 0.98013 1.67347 1.12739 1.19174 1.17264 0.75988 0.91256 0.87537 0.91357 0.80473 0.86644 0.89585 0.90203 0.92659 0.91802 0.90853 0.94903 0.91843 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.06 19.25 74.32 1.43 -10.63 16 2 C -0.10 -4.91 9.60 31.12 0.30 -4.61 16 3 C 0.24 12.08 4.75 84.57 0.40 12.48 16 4 N -0.42 -23.87 2.59 -649.40 -1.68 -25.55 16 5 C -0.36 -21.72 9.29 84.07 0.78 -20.94 16 6 H 0.08 5.01 7.40 -2.91 -0.02 4.99 16 7 C 0.01 0.47 4.72 84.94 0.40 0.87 16 8 N -0.85 -46.14 9.73 21.67 0.21 -45.93 16 9 Si 0.99 42.78 29.63 68.60 2.03 44.81 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 C 0.49 27.17 7.55 86.59 0.65 27.82 16 14 O -0.63 -39.11 16.37 -4.25 -0.07 -39.18 16 15 C 0.01 0.49 6.41 40.55 0.26 0.75 16 16 C -0.26 -9.33 10.62 67.14 0.71 -8.61 16 17 S 0.27 6.37 22.92 -56.49 -1.29 5.08 16 18 C 0.02 0.52 5.84 88.57 0.52 1.04 16 19 C -0.04 -0.73 5.26 29.85 0.16 -0.58 16 20 C -0.08 -1.46 2.91 -10.79 -0.03 -1.49 16 21 C -0.14 -1.79 9.19 71.98 0.66 -1.13 16 22 C -0.15 -3.46 8.99 71.98 0.65 -2.81 16 23 N -0.45 -17.06 4.92 -180.85 -0.89 -17.95 16 24 H 0.22 7.91 7.80 -4.41 -0.03 7.88 16 25 H 0.07 3.57 6.77 -2.39 -0.02 3.56 16 26 H 0.11 4.83 4.98 -2.38 -0.01 4.81 16 27 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.18 6.26 8.04 -2.91 -0.02 6.24 16 29 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.03 0.95 6.06 -2.38 -0.01 0.93 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.97 326.35 6.28 -67.69 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.07 Total: 18.87 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 6.89 Total: -7.84 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.36 Total: -89.44 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.07 Total: -39.18 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 6.37 SS G_CDS: -1.29 Total: 5.08 kcal Total: -73.97 6.28 -67.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281553402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.054 kcal (2) G-P(sol) polarization free energy of solvation -73.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds