Wall clock time and date at job start Tue Mar 31 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47263 * 339.11692 * 3 2 1 5 5 C 1.37089 * 119.99671 * 264.13561 * 4 3 2 6 6 H 1.08008 * 119.99784 * 197.43243 * 5 4 3 7 7 C 1.38946 * 120.00474 * 17.44120 * 5 4 3 8 8 N 1.31414 * 119.99960 * 21.51598 * 7 5 4 9 9 Si 1.86799 * 120.00251 * 201.52164 * 7 5 4 10 10 H 1.48505 * 109.47331 * 89.99458 * 9 7 5 11 11 H 1.48501 * 109.47272 * 209.99408 * 9 7 5 12 12 H 1.48497 * 109.47024 * 329.99676 * 9 7 5 13 13 C 1.34780 * 119.99862 * 84.13586 * 4 3 2 14 14 O 1.21297 * 119.99488 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00012 * 359.97438 * 13 4 3 16 16 C 1.53001 * 109.46849 * 179.97438 * 15 13 4 17 17 C 1.53007 * 109.47008 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46897 * 180.02562 * 17 16 15 19 19 C 1.33638 * 122.74825 * 124.73205 * 18 17 16 20 20 S 1.76205 * 107.92368 * 179.97438 * 19 18 17 21 21 C 1.70975 * 90.28159 * 0.27405 * 20 19 18 22 22 C 1.50697 * 124.91530 * 179.83451 * 21 20 19 23 23 N 1.29027 * 110.16775 * 359.84249 * 21 20 19 24 24 H 4.40641 * 5.51451 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.47423 * 219.11264 * 3 2 1 26 26 H 1.09007 * 109.46918 * 99.11427 * 3 2 1 27 27 H 0.97001 * 119.99932 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47093 * 60.00593 * 15 13 4 29 29 H 1.08991 * 109.47343 * 299.99782 * 15 13 4 30 30 H 1.08998 * 109.47076 * 60.00159 * 16 15 13 31 31 H 1.08997 * 109.47659 * 300.00320 * 16 15 13 32 32 H 1.08998 * 109.47024 * 299.99807 * 17 16 15 33 33 H 1.08995 * 109.47181 * 60.00636 * 17 16 15 34 34 H 1.08001 * 126.03839 * 0.03951 * 19 18 17 35 35 H 1.08995 * 109.47583 * 270.00479 * 22 21 20 36 36 H 1.09007 * 109.47099 * 30.00411 * 22 21 20 37 37 H 1.09003 * 109.47243 * 150.00478 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2896 0.4924 5 6 3.4778 -1.4344 1.8117 6 1 4.0907 -2.2678 2.1221 7 6 3.0368 -0.5092 2.7498 8 7 1.9851 0.2360 2.4937 9 14 3.9389 -0.3243 4.3751 10 1 5.0068 0.6982 4.2351 11 1 2.9812 0.1011 5.4273 12 1 4.5460 -1.6252 4.7550 13 6 3.2476 -2.3342 -0.3519 14 8 3.6529 -3.4023 0.0558 15 6 2.8701 -2.1751 -1.8021 16 6 3.0908 -3.5000 -2.5348 17 6 2.7081 -3.3383 -4.0074 18 6 2.9250 -4.6434 -4.7289 19 6 1.9603 -5.2547 -5.4230 20 16 2.6343 -6.7355 -6.0996 21 6 4.1438 -6.3895 -5.3752 22 6 5.3716 -7.2564 -5.4839 23 7 4.0795 -5.2787 -4.7218 24 1 -1.0498 -0.0003 0.0003 25 1 3.0090 0.7982 0.6483 26 1 3.0092 0.1636 -1.0148 27 1 1.6775 0.8822 3.1485 28 1 3.4897 -1.4017 -2.2561 29 1 1.8208 -1.8895 -1.8751 30 1 2.4716 -4.2737 -2.0809 31 1 4.1403 -3.7852 -2.4617 32 1 1.6587 -3.0529 -4.0808 33 1 3.3277 -2.5647 -4.4610 34 1 0.9470 -4.9026 -5.5481 35 1 5.3805 -7.9780 -4.6670 36 1 5.3592 -7.7862 -6.4365 37 1 6.2634 -6.6322 -5.4269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281612472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:52 Heat of formation + Delta-G solvation = 62.727070 kcal Electronic energy + Delta-G solvation = -20117.335853 eV Core-core repulsion = 16988.393807 eV Total energy + Delta-G solvation = -3128.942045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.98408 -38.61421 -35.32139 -34.34111 -32.27389 -31.77773 -31.15385 -28.78352 -27.50889 -26.31352 -24.60252 -22.99766 -21.47636 -19.74672 -18.76550 -17.82013 -17.55038 -16.56289 -15.95997 -15.44290 -15.21668 -14.82717 -14.53760 -14.14437 -13.80046 -13.77269 -13.27571 -12.96706 -12.52744 -12.47101 -12.29715 -12.16435 -12.03960 -11.64673 -11.35459 -11.07752 -11.00600 -10.77801 -10.45452 -10.31983 -10.20950 -9.64493 -9.46495 -9.32758 -9.23086 -8.85822 -8.71552 -8.32561 -7.81102 -6.28836 -3.80702 0.65200 1.28875 1.65398 2.77598 3.18252 3.28174 3.33158 3.72791 3.97499 4.00004 4.08487 4.22313 4.81757 4.90968 5.08326 5.13281 5.16056 5.24016 5.26852 5.47801 5.55756 5.56802 5.65061 5.71412 5.93344 5.98479 6.07276 6.15205 6.25050 6.45098 6.64947 6.78904 6.86199 7.05656 7.61026 7.74949 8.11655 8.48640 8.83182 9.19876 9.42223 9.98782 10.72331 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026998 B = 0.003152 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.877221 B = 8879.752934 C = 9641.498689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.232 3.768 4 N -0.444 5.444 5 C -0.314 4.314 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.452 3.548 14 O -0.583 6.583 15 C -0.132 4.132 16 C -0.089 4.089 17 C -0.047 4.047 18 C 0.084 3.916 19 C -0.263 4.263 20 S 0.092 5.908 21 C 0.052 3.948 22 C -0.078 4.078 23 N -0.463 5.463 24 H 0.198 0.802 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.267 0.733 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.176 0.824 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -6.716 -17.498 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.112 4.112 3 C 0.108 3.892 4 N -0.163 5.163 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.241 3.759 14 O -0.467 6.467 15 C -0.172 4.172 16 C -0.127 4.127 17 C -0.087 4.087 18 C -0.047 4.047 19 C -0.402 4.402 20 S 0.346 5.654 21 C -0.227 4.227 22 C -0.138 4.138 23 N -0.178 5.178 24 H 0.215 0.785 25 H 0.127 0.873 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.193 0.807 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.457 -7.736 -17.531 19.167 hybrid contribution -0.379 1.130 1.421 1.855 sum 0.078 -6.605 -16.110 17.411 Atomic orbital electron populations 1.24254 0.95363 1.02333 1.06358 1.23225 0.94392 0.98303 0.95303 1.18253 0.84202 0.89180 0.97518 1.43726 1.56282 1.07548 1.08770 1.19677 1.30054 1.12404 0.82043 0.87895 1.25265 0.95200 0.97504 0.99397 1.70093 1.19778 1.24027 1.36370 0.86024 0.79172 0.78862 0.81265 1.20375 1.21184 1.19454 1.20131 0.83916 0.84103 0.87758 1.90521 1.50875 1.26598 1.78720 1.21575 1.02308 0.98572 0.94758 1.21157 1.03358 0.97009 0.91191 1.20331 1.02106 0.90774 0.95524 1.20393 0.87261 0.98884 0.98193 1.26799 1.05346 0.99461 1.08559 1.83829 1.07077 1.23559 1.50897 1.27075 0.99983 0.96619 0.99009 1.20448 0.92501 0.97749 1.03086 1.66087 1.25947 1.06906 1.18846 0.78453 0.87343 0.91974 0.92249 0.90507 0.90289 0.91766 0.90563 0.90303 0.90117 0.80657 0.89481 0.90270 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.48 19.25 29.55 0.57 -4.91 16 2 C -0.11 -2.48 10.87 -37.12 -0.40 -2.88 16 3 C 0.23 5.15 4.91 -6.83 -0.03 5.11 16 4 N -0.44 -11.38 2.60 -117.93 -0.31 -11.69 16 5 C -0.31 -8.81 9.32 -14.94 -0.14 -8.95 16 6 H 0.10 3.05 7.39 -52.48 -0.39 2.66 16 7 C 0.03 0.80 4.87 -17.47 -0.08 0.71 16 8 N -0.86 -22.93 9.48 55.50 0.53 -22.41 16 9 Si 0.92 20.78 29.60 -169.99 -5.03 15.74 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.45 11.17 7.56 -10.99 -0.08 11.09 16 14 O -0.58 -16.55 15.63 5.54 0.09 -16.46 16 15 C -0.13 -2.44 4.30 -27.88 -0.12 -2.56 16 16 C -0.09 -1.54 4.40 -26.73 -0.12 -1.66 16 17 C -0.05 -0.64 5.71 -27.88 -0.16 -0.80 16 18 C 0.08 1.16 6.08 -84.23 -0.51 0.65 16 19 C -0.26 -3.04 11.07 29.12 0.32 -2.72 16 20 S 0.09 0.93 23.18 -107.50 -2.49 -1.56 16 21 C 0.05 0.61 7.39 -13.46 -0.10 0.51 16 22 C -0.08 -0.63 10.46 36.00 0.38 -0.26 16 23 N -0.46 -6.84 10.34 -8.06 -0.08 -6.92 16 24 H 0.20 3.33 7.80 -54.10 -0.42 2.91 16 25 H 0.11 2.54 6.44 -51.93 -0.33 2.21 16 26 H 0.06 1.14 6.69 -51.93 -0.35 0.79 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 29 H 0.08 1.40 7.50 -51.93 -0.39 1.01 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 32 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -33.34 334.69 -7.51 -40.85 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.77 Total: 4.06 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.48 Total: -6.65 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.14 Total: -41.02 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.34 -7.51 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281612472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.575 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds