Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47291 * 293.59492 * 3 2 1 5 5 C 1.36889 * 120.00349 * 265.94183 * 4 3 2 6 6 H 1.08004 * 120.00267 * 136.92089 * 5 4 3 7 7 C 1.39011 * 119.99767 * 316.64578 * 5 4 3 8 8 N 1.31401 * 119.99768 * 177.83384 * 7 5 4 9 9 Si 1.86799 * 120.00212 * 357.84166 * 7 5 4 10 10 H 1.48495 * 109.47429 * 92.88559 * 9 7 5 11 11 H 1.48498 * 109.47137 * 212.88867 * 9 7 5 12 12 H 1.48505 * 109.46874 * 332.88795 * 9 7 5 13 13 C 1.34776 * 119.99738 * 85.94195 * 4 3 2 14 14 O 1.21732 * 120.00261 * 173.99311 * 13 4 3 15 15 C 1.46558 * 120.00282 * 353.99520 * 13 4 3 16 16 S 1.76220 * 126.17772 * 354.17288 * 15 13 4 17 17 C 1.70924 * 90.37328 * 179.97438 * 16 15 13 18 18 N 1.29371 * 110.59677 * 0.02562 * 17 16 15 19 19 C 1.30946 * 117.47019 * 359.72964 * 18 17 16 20 20 C 1.50694 * 123.04390 * 180.32001 * 19 18 17 21 21 C 1.52992 * 109.47391 * 241.09854 * 20 19 18 22 22 C 1.53003 * 109.46987 * 1.10005 * 20 19 18 23 23 C 1.53008 * 109.47146 * 121.09718 * 20 19 18 24 24 H 4.40635 * 5.51478 * 180.02562 * 4 1 2 25 25 H 1.09006 * 109.47011 * 173.59597 * 3 2 1 26 26 H 1.08999 * 109.47525 * 53.60068 * 3 2 1 27 27 H 0.97000 * 119.99979 * 179.97438 * 8 7 5 28 28 H 1.08001 * 124.70101 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.47345 * 81.05550 * 21 20 19 30 30 H 1.08997 * 109.47693 * 201.05643 * 21 20 19 31 31 H 1.09008 * 109.47203 * 321.05647 * 21 20 19 32 32 H 1.08997 * 109.47095 * 59.99869 * 22 20 19 33 33 H 1.09006 * 109.47016 * 179.97438 * 22 20 19 34 34 H 1.08997 * 109.47236 * 299.99752 * 22 20 19 35 35 H 1.09001 * 109.46531 * 59.86798 * 23 20 19 36 36 H 1.08992 * 109.46818 * 179.86209 * 23 20 19 37 37 H 1.09000 * 109.46770 * 299.86519 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5520 1.2657 5 6 3.4415 0.2847 2.3048 6 1 3.1365 0.0322 3.3096 7 6 4.1507 1.4564 2.0674 8 7 4.4084 2.2805 3.0580 9 14 4.7373 1.8597 0.3404 10 1 3.7227 2.7014 -0.3431 11 1 6.0240 2.5973 0.4142 12 1 4.9315 0.6007 -0.4230 13 6 3.2819 -1.8842 1.4071 14 8 3.7898 -2.3367 2.4166 15 6 2.8307 -2.7881 0.3454 16 16 1.9501 -2.3264 -1.1095 17 6 1.9180 -3.9570 -1.6210 18 7 2.5140 -4.7161 -0.7595 19 6 3.0215 -4.1419 0.3023 20 6 3.7474 -4.9040 1.3808 21 6 3.0066 -4.7386 2.7091 22 6 3.8021 -6.3871 1.0085 23 6 5.1709 -4.3603 1.5196 24 1 -1.0499 -0.0003 0.0001 25 1 3.0088 1.0221 -0.1146 26 1 3.0096 -0.6090 -0.8271 27 1 4.9036 3.0980 2.8924 28 1 1.4631 -4.3053 -2.5366 29 1 2.1655 -5.4310 2.7447 30 1 3.6870 -4.9509 3.5336 31 1 2.6392 -3.7160 2.7953 32 1 4.3300 -6.5049 0.0622 33 1 4.3276 -6.9383 1.7884 34 1 2.7881 -6.7745 0.9096 35 1 5.1318 -3.3031 1.7824 36 1 5.6951 -4.9099 2.3013 37 1 5.6995 -4.4804 0.5739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281619931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = 102.524303 kcal Electronic energy + Delta-G solvation = -22066.315835 eV Core-core repulsion = 18939.099527 eV Total energy + Delta-G solvation = -3127.216308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23324 -38.71932 -36.07967 -35.11618 -32.94834 -31.81418 -29.86825 -27.17180 -26.86776 -26.65703 -26.07897 -24.38379 -21.45309 -20.36635 -18.85514 -18.01657 -17.39908 -17.00170 -16.18450 -15.76404 -15.24916 -14.79407 -14.30463 -14.18029 -13.87420 -13.69203 -13.56701 -13.07462 -12.88685 -12.63447 -12.15805 -11.86002 -11.59419 -11.51844 -11.30381 -10.94664 -10.74372 -10.52876 -10.46511 -10.37608 -10.24602 -10.02348 -9.86041 -9.24144 -9.19880 -8.84985 -8.62052 -8.38178 -7.97160 -6.55043 -4.24875 0.65720 1.61029 1.97030 2.83817 2.89525 2.99173 3.00286 3.08640 3.22759 3.84776 3.93258 4.24338 4.45067 4.59517 4.94264 5.12876 5.26346 5.32928 5.48033 5.50059 5.65992 5.70587 5.78880 6.07753 6.16822 6.18831 6.29000 6.31447 6.36244 6.54305 6.57092 6.73945 7.08250 7.12837 7.34862 7.90030 7.96677 8.06765 8.24667 8.69145 9.01860 9.45331 10.54936 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.007627 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.698853 B = 3670.179992 C = 4521.517581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C 0.180 3.820 4 N -0.450 5.450 5 C -0.307 4.307 6 H 0.112 0.888 7 C 0.062 3.938 8 N -0.858 5.858 9 Si 0.878 3.122 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.262 1.262 13 C 0.538 3.462 14 O -0.514 6.514 15 C -0.263 4.263 16 S 0.175 5.825 17 C -0.029 4.029 18 N -0.469 5.469 19 C 0.128 3.872 20 C 0.018 3.982 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.159 4.159 24 H 0.217 0.783 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.278 0.722 28 H 0.191 0.809 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -7.825 -9.890 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.190 4.190 3 C 0.056 3.944 4 N -0.170 5.170 5 C -0.434 4.434 6 H 0.130 0.870 7 C -0.145 4.145 8 N -0.493 5.493 9 Si 0.706 3.294 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.187 1.187 13 C 0.327 3.673 14 O -0.397 6.397 15 C -0.387 4.387 16 S 0.433 5.567 17 C -0.323 4.323 18 N -0.182 5.182 19 C -0.010 4.010 20 C 0.015 3.985 21 C -0.199 4.199 22 C -0.183 4.183 23 C -0.216 4.216 24 H 0.234 0.766 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.208 0.792 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.708 -7.525 -9.916 13.308 hybrid contribution 0.336 -0.037 -0.574 0.666 sum -4.372 -7.562 -10.490 13.651 Atomic orbital electron populations 1.24725 0.95543 1.00699 0.99930 1.23353 0.94697 1.00237 1.00699 1.19238 0.84683 1.00625 0.89832 1.43562 1.56611 1.04879 1.11906 1.19098 1.34125 1.01298 0.88914 0.87011 1.25459 0.94744 0.96332 0.98006 1.69604 1.37132 1.11123 1.31421 0.86942 0.78910 0.79275 0.84239 1.19502 1.20768 1.18657 1.16640 0.82766 0.81472 0.86423 1.90588 1.45255 1.74024 1.29785 1.26217 1.11468 0.98809 1.02188 1.84658 1.49798 1.07930 1.14327 1.28848 1.03264 0.96760 1.03405 1.66020 1.11094 1.38551 1.02507 1.20857 0.97229 0.88930 0.93969 1.19030 0.94979 0.93214 0.91276 1.22144 0.98947 1.04220 0.94548 1.21738 1.01561 0.94436 1.00581 1.22339 0.92951 1.06252 1.00072 0.76583 0.88634 0.89051 0.91096 0.79246 0.94635 0.92414 0.89012 0.92866 0.93046 0.92763 0.87591 0.92775 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 19.12 29.55 0.57 -2.35 16 2 C -0.19 -3.41 10.73 -37.12 -0.40 -3.81 16 3 C 0.18 3.64 3.61 -6.83 -0.02 3.62 16 4 N -0.45 -10.62 2.19 -119.46 -0.26 -10.88 16 5 C -0.31 -8.26 9.38 -15.01 -0.14 -8.40 16 6 H 0.11 3.35 8.05 -52.48 -0.42 2.93 16 7 C 0.06 1.64 5.49 -17.45 -0.10 1.55 16 8 N -0.86 -23.82 13.96 55.50 0.77 -23.05 16 9 Si 0.88 19.39 24.57 -169.99 -4.18 15.21 16 10 H -0.27 -5.53 6.96 56.52 0.39 -5.14 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.26 -5.52 6.41 56.52 0.36 -5.16 16 13 C 0.54 12.30 6.66 -12.91 -0.09 12.22 16 14 O -0.51 -12.57 9.74 5.16 0.05 -12.52 16 15 C -0.26 -5.13 5.86 -36.76 -0.22 -5.35 16 16 S 0.17 2.70 16.22 -107.50 -1.74 0.96 16 17 C -0.03 -0.40 12.21 51.73 0.63 0.23 16 18 N -0.47 -7.89 9.54 -11.29 -0.11 -8.00 16 19 C 0.13 2.37 5.48 -83.50 -0.46 1.91 16 20 C 0.02 0.31 0.75 -155.66 -0.12 0.20 16 21 C -0.14 -2.54 7.96 37.15 0.30 -2.25 16 22 C -0.13 -1.89 7.71 37.16 0.29 -1.60 16 23 C -0.16 -2.87 8.03 37.16 0.30 -2.57 16 24 H 0.22 2.35 7.80 -54.09 -0.42 1.93 16 25 H 0.10 2.00 2.74 -51.93 -0.14 1.85 16 26 H 0.09 1.68 4.91 -26.29 -0.13 1.55 16 27 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.19 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.03 0.58 7.96 -51.93 -0.41 0.16 16 30 H 0.06 0.99 7.95 -51.93 -0.41 0.57 16 31 H 0.09 1.93 4.72 -51.92 -0.24 1.68 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.11 2.26 4.34 -52.27 -0.23 2.03 16 36 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -29.29 305.15 -4.45 -33.74 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.13 Total: 6.54 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 0.54 Total: -6.61 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.40 Total: -41.93 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.05 Total: -12.52 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.18 Total: 15.21 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.74 Total: 0.96 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.29 -4.45 -33.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281619931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.268 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds