Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47291 * 293.59492 * 3 2 1 5 5 C 1.36889 * 120.00349 * 265.94183 * 4 3 2 6 6 H 1.08004 * 120.00267 * 136.92089 * 5 4 3 7 7 C 1.39011 * 119.99767 * 316.64578 * 5 4 3 8 8 N 1.31401 * 119.99768 * 177.83384 * 7 5 4 9 9 Si 1.86799 * 120.00212 * 357.84166 * 7 5 4 10 10 H 1.48495 * 109.47429 * 92.88559 * 9 7 5 11 11 H 1.48498 * 109.47137 * 212.88867 * 9 7 5 12 12 H 1.48505 * 109.46874 * 332.88795 * 9 7 5 13 13 C 1.34776 * 119.99738 * 85.94195 * 4 3 2 14 14 O 1.21732 * 120.00261 * 173.99311 * 13 4 3 15 15 C 1.46558 * 120.00282 * 353.99520 * 13 4 3 16 16 S 1.76220 * 126.17772 * 354.17288 * 15 13 4 17 17 C 1.70924 * 90.37328 * 179.97438 * 16 15 13 18 18 N 1.29371 * 110.59677 * 0.02562 * 17 16 15 19 19 C 1.30946 * 117.47019 * 359.72964 * 18 17 16 20 20 C 1.50694 * 123.04390 * 180.32001 * 19 18 17 21 21 C 1.52992 * 109.47391 * 241.09854 * 20 19 18 22 22 C 1.53003 * 109.46987 * 1.10005 * 20 19 18 23 23 C 1.53008 * 109.47146 * 121.09718 * 20 19 18 24 24 H 4.40635 * 5.51478 * 180.02562 * 4 1 2 25 25 H 1.09006 * 109.47011 * 173.59597 * 3 2 1 26 26 H 1.08999 * 109.47525 * 53.60068 * 3 2 1 27 27 H 0.97000 * 119.99979 * 179.97438 * 8 7 5 28 28 H 1.08001 * 124.70101 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.47345 * 81.05550 * 21 20 19 30 30 H 1.08997 * 109.47693 * 201.05643 * 21 20 19 31 31 H 1.09008 * 109.47203 * 321.05647 * 21 20 19 32 32 H 1.08997 * 109.47095 * 59.99869 * 22 20 19 33 33 H 1.09006 * 109.47016 * 179.97438 * 22 20 19 34 34 H 1.08997 * 109.47236 * 299.99752 * 22 20 19 35 35 H 1.09001 * 109.46531 * 59.86798 * 23 20 19 36 36 H 1.08992 * 109.46818 * 179.86209 * 23 20 19 37 37 H 1.09000 * 109.46770 * 299.86519 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5520 1.2657 5 6 3.4415 0.2847 2.3048 6 1 3.1365 0.0322 3.3096 7 6 4.1507 1.4564 2.0674 8 7 4.4084 2.2805 3.0580 9 14 4.7373 1.8597 0.3404 10 1 3.7227 2.7014 -0.3431 11 1 6.0240 2.5973 0.4142 12 1 4.9315 0.6007 -0.4230 13 6 3.2819 -1.8842 1.4071 14 8 3.7898 -2.3367 2.4166 15 6 2.8307 -2.7881 0.3454 16 16 1.9501 -2.3264 -1.1095 17 6 1.9180 -3.9570 -1.6210 18 7 2.5140 -4.7161 -0.7595 19 6 3.0215 -4.1419 0.3023 20 6 3.7474 -4.9040 1.3808 21 6 3.0066 -4.7386 2.7091 22 6 3.8021 -6.3871 1.0085 23 6 5.1709 -4.3603 1.5196 24 1 -1.0499 -0.0003 0.0001 25 1 3.0088 1.0221 -0.1146 26 1 3.0096 -0.6090 -0.8271 27 1 4.9036 3.0980 2.8924 28 1 1.4631 -4.3053 -2.5366 29 1 2.1655 -5.4310 2.7447 30 1 3.6870 -4.9509 3.5336 31 1 2.6392 -3.7160 2.7953 32 1 4.3300 -6.5049 0.0622 33 1 4.3276 -6.9383 1.7884 34 1 2.7881 -6.7745 0.9096 35 1 5.1318 -3.3031 1.7824 36 1 5.6951 -4.9099 2.3013 37 1 5.6995 -4.4804 0.5739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281619931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = 83.319316 kcal Electronic energy + Delta-G solvation = -22067.148626 eV Core-core repulsion = 18939.099527 eV Total energy + Delta-G solvation = -3128.049098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69741 -40.30012 -37.65049 -36.59789 -34.71465 -33.42590 -31.32254 -28.72257 -28.18033 -28.11674 -27.67405 -25.91746 -22.92385 -21.86798 -20.38346 -19.56801 -18.83179 -18.61993 -17.78025 -17.28103 -16.74977 -16.39036 -15.68872 -15.54110 -15.42083 -15.18691 -15.02259 -14.72457 -14.59932 -14.11010 -13.73811 -13.17313 -13.06098 -12.95707 -12.81623 -12.63951 -12.27475 -11.95164 -11.86800 -11.83790 -11.67497 -11.45409 -11.42008 -11.06020 -10.50766 -10.34593 -10.21434 -9.91660 -9.57469 -8.54432 -6.32145 -0.65780 0.30499 0.70825 1.11792 1.23049 1.31460 1.52025 1.65233 1.88836 2.08911 2.22113 2.65795 2.90097 3.19890 3.43281 3.70036 3.89521 3.95555 4.05776 4.13957 4.15093 4.39264 4.48600 4.81118 4.84765 4.92583 4.94255 5.00500 5.03710 5.14752 5.24893 5.39778 5.44763 5.58225 5.68025 5.95610 6.37308 6.64008 6.70588 6.78741 7.07174 7.64661 8.60513 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.007627 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.698853 B = 3670.179992 C = 4521.517581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.248 4.248 3 C 0.183 3.817 4 N -0.468 5.468 5 C -0.320 4.320 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.910 5.910 9 Si 0.939 3.061 10 H -0.240 1.240 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.538 3.462 14 O -0.543 6.543 15 C -0.314 4.314 16 S 0.219 5.781 17 C 0.004 3.996 18 N -0.487 5.487 19 C 0.139 3.861 20 C 0.009 3.991 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.154 4.154 24 H 0.262 0.738 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.282 0.718 28 H 0.242 0.758 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -9.614 -13.874 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.251 4.251 3 C 0.060 3.940 4 N -0.189 5.189 5 C -0.448 4.448 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.547 5.547 9 Si 0.763 3.237 10 H -0.165 1.165 11 H -0.209 1.209 12 H -0.172 1.172 13 C 0.329 3.671 14 O -0.427 6.427 15 C -0.438 4.438 16 S 0.478 5.522 17 C -0.290 4.290 18 N -0.201 5.201 19 C 0.000 4.000 20 C 0.007 3.993 21 C -0.192 4.192 22 C -0.172 4.172 23 C -0.211 4.211 24 H 0.278 0.722 25 H 0.104 0.896 26 H 0.127 0.873 27 H 0.092 0.908 28 H 0.258 0.742 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.429 -9.309 -13.913 17.932 hybrid contribution 0.696 0.311 0.648 1.000 sum -5.732 -8.997 -13.266 17.023 Atomic orbital electron populations 1.25730 0.96275 0.97394 0.96532 1.23259 0.94849 1.03267 1.03718 1.19169 0.86467 1.00139 0.88244 1.43538 1.58209 1.04775 1.12422 1.18617 1.35396 1.02594 0.88193 0.92705 1.26237 0.94332 0.95744 1.02628 1.69741 1.38892 1.12086 1.34007 0.85973 0.78761 0.79860 0.79102 1.16509 1.20857 1.17248 1.17160 0.81512 0.81685 0.86786 1.90572 1.45891 1.74824 1.31424 1.25844 1.15195 0.98849 1.03952 1.84395 1.48268 1.08221 1.11304 1.29754 0.99779 0.95951 1.03469 1.66140 1.12595 1.38641 1.02681 1.21053 0.95999 0.88649 0.94323 1.19132 0.94223 0.95057 0.90915 1.22013 0.99544 1.02331 0.95310 1.21643 1.02069 0.92269 1.01236 1.22213 0.93985 1.04106 1.00800 0.72210 0.89601 0.87347 0.90784 0.74220 0.93039 0.92350 0.92477 0.92522 0.91468 0.92415 0.91164 0.91543 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 19.12 74.32 1.42 -2.43 16 2 C -0.25 -8.62 10.73 31.12 0.33 -8.29 16 3 C 0.18 7.29 3.61 84.57 0.31 7.60 16 4 N -0.47 -23.00 2.19 -650.08 -1.43 -24.42 16 5 C -0.32 -18.53 9.38 84.09 0.79 -17.74 16 6 H 0.06 3.67 8.05 -2.91 -0.02 3.65 16 7 C 0.01 0.74 5.49 84.94 0.47 1.21 16 8 N -0.91 -53.76 13.96 21.68 0.30 -53.46 16 9 Si 0.94 40.70 24.57 68.60 1.69 42.39 16 10 H -0.24 -9.23 6.96 99.48 0.69 -8.54 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.25 -10.07 6.41 99.48 0.64 -9.43 16 13 C 0.54 25.64 6.66 86.41 0.58 26.22 16 14 O -0.54 -28.49 9.74 -4.45 -0.04 -28.53 16 15 C -0.31 -12.07 5.86 24.10 0.14 -11.92 16 16 S 0.22 6.03 16.22 -56.49 -0.92 5.11 16 17 C 0.00 0.09 12.21 130.60 1.59 1.69 16 18 N -0.49 -14.61 9.54 -189.65 -1.81 -16.42 16 19 C 0.14 4.92 5.48 42.35 0.23 5.15 16 20 C 0.01 0.32 0.75 -52.93 -0.04 0.28 16 21 C -0.13 -4.89 7.96 71.98 0.57 -4.32 16 22 C -0.11 -3.15 7.71 71.98 0.55 -2.60 16 23 C -0.15 -5.57 8.03 71.98 0.58 -5.00 16 24 H 0.26 4.27 7.80 -4.42 -0.03 4.23 16 25 H 0.09 3.51 2.74 -2.38 -0.01 3.51 16 26 H 0.11 3.80 4.91 -18.69 -0.09 3.70 16 27 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.24 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.05 1.64 7.96 -2.39 -0.02 1.62 16 30 H 0.06 2.04 7.95 -2.39 -0.02 2.02 16 31 H 0.06 2.51 4.72 -2.38 -0.01 2.50 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.07 3.13 4.34 -7.79 -0.03 3.10 16 36 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -70.98 305.15 6.23 -64.76 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.91 Total: 20.73 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 7.52 Total: -10.15 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -2.93 Total: -94.30 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.04 Total: -28.53 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.69 Total: 42.39 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -0.92 Total: 5.11 kcal Total: -70.98 6.23 -64.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281619931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.076 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds