Wall clock time and date at job start Tue Mar 31 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47192 * 138.38220 * 3 2 1 5 5 C 1.36880 * 119.99850 * 264.62832 * 4 3 2 6 6 H 1.07999 * 120.00412 * 128.03431 * 5 4 3 7 7 C 1.39011 * 120.00031 * 308.03633 * 5 4 3 8 8 N 1.31401 * 119.99976 * 4.01182 * 7 5 4 9 9 Si 1.86798 * 120.00390 * 184.00718 * 7 5 4 10 10 H 1.48507 * 109.46815 * 59.99783 * 9 7 5 11 11 H 1.48490 * 109.47562 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47195 * 300.00286 * 9 7 5 13 13 C 1.34774 * 120.00197 * 84.62220 * 4 3 2 14 14 O 1.21749 * 119.99855 * 4.02278 * 13 4 3 15 15 C 1.46451 * 120.00012 * 184.01623 * 13 4 3 16 16 S 1.75837 * 125.46257 * 352.77080 * 15 13 4 17 17 C 1.70618 * 91.56906 * 179.97438 * 16 15 13 18 18 C 1.33855 * 110.96531 * 359.97438 * 17 16 15 19 19 C 1.36772 * 125.46516 * 172.76143 * 15 13 4 20 20 C 1.50703 * 123.35674 * 0.02907 * 19 15 13 21 21 N 1.46893 * 109.47206 * 79.94933 * 20 19 15 22 22 C 1.46897 * 111.00406 * 66.04530 * 21 20 19 23 23 C 1.46906 * 110.99823 * 189.99685 * 21 20 19 24 24 H 4.40641 * 5.51491 * 180.02562 * 4 1 2 25 25 H 1.08993 * 109.47763 * 18.37657 * 3 2 1 26 26 H 1.09000 * 109.47075 * 258.37878 * 3 2 1 27 27 H 0.96998 * 120.00389 * 179.97438 * 8 7 5 28 28 H 1.07995 * 124.51499 * 180.02562 * 17 16 15 29 29 H 1.08007 * 122.43733 * 179.97438 * 18 17 16 30 30 H 1.08999 * 109.46980 * 199.94962 * 20 19 15 31 31 H 1.09005 * 109.47228 * 319.94477 * 20 19 15 32 32 H 1.09005 * 109.47505 * 59.99601 * 22 21 20 33 33 H 1.09002 * 109.47618 * 180.02562 * 22 21 20 34 34 H 1.09002 * 109.47163 * 300.00127 * 22 21 20 35 35 H 1.09002 * 109.46942 * 60.00064 * 23 21 20 36 36 H 1.09002 * 109.46804 * 179.97438 * 23 21 20 37 37 H 1.08996 * 109.47263 * 299.99845 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0335 -0.9174 5 6 3.4668 0.7045 -2.2037 6 1 3.0473 1.2604 -3.0291 7 6 4.3449 -0.3452 -2.4476 8 7 4.7937 -1.0719 -1.4490 9 14 4.8867 -0.7230 -4.1949 10 1 5.5762 0.4616 -4.7663 11 1 5.8174 -1.8800 -4.1854 12 1 3.6976 -1.0504 -5.0220 13 6 3.2548 2.3076 -0.4948 14 8 3.0289 2.5872 0.6684 15 6 3.6581 3.3556 -1.4349 16 16 4.1907 3.0918 -3.0898 17 6 4.4128 4.7657 -3.3347 18 6 4.1004 5.4567 -2.2318 19 6 3.6808 4.6965 -1.1665 20 6 3.2843 5.2820 0.1644 21 7 4.3979 5.1422 1.1121 22 6 5.5465 5.9595 0.6990 23 6 3.9735 5.4823 2.4768 24 1 -1.0502 -0.0001 0.0003 25 1 3.0098 -0.9743 -0.3239 26 1 3.0092 0.2078 1.0066 27 1 5.4061 -1.8046 -1.6191 28 1 4.7586 5.2086 -4.2570 29 1 4.1742 6.5331 -2.1822 30 1 3.0437 6.3378 0.0396 31 1 2.4117 4.7535 0.5484 32 1 5.2510 7.0079 0.6592 33 1 6.3568 5.8370 1.4177 34 1 5.8843 5.6396 -0.2867 35 1 3.1677 4.8153 2.7835 36 1 4.8169 5.3698 3.1581 37 1 3.6210 6.5133 2.5014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281983371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:01 Heat of formation + Delta-G solvation = 69.440244 kcal Electronic energy + Delta-G solvation = -21534.003387 eV Core-core repulsion = 18405.352447 eV Total energy + Delta-G solvation = -3128.650940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.94709 -37.68078 -35.68978 -34.88049 -32.60333 -31.38698 -29.59151 -27.67240 -27.15579 -26.14864 -24.70129 -23.19299 -21.06815 -20.29650 -18.68820 -17.51743 -17.31017 -16.09228 -15.37770 -15.03261 -14.84205 -14.66565 -14.38697 -14.05810 -13.97383 -13.67882 -12.71601 -12.53241 -12.30174 -12.04669 -11.97143 -11.74801 -11.67280 -11.60818 -11.28332 -11.26047 -11.20672 -10.91360 -10.85769 -10.55487 -9.85531 -9.69718 -9.34227 -8.94075 -8.54309 -7.94241 -7.80952 -7.65881 -7.44878 -6.60063 -4.49285 1.47292 2.53944 2.96509 3.08001 3.10070 3.12191 3.13890 3.51188 3.72992 3.94628 4.35400 4.64774 4.79525 4.90095 5.37598 5.46846 5.52542 5.59420 5.68269 5.79853 5.89602 5.95937 6.05625 6.22855 6.28582 6.29022 6.36252 6.68296 6.72040 6.78402 7.01919 7.08556 7.11059 7.22582 7.54565 7.58933 7.86200 8.12780 8.46579 8.81842 9.34423 9.79092 10.40772 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.007443 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.657085 B = 3761.253311 C = 4887.248441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.152 4.152 3 C 0.215 3.785 4 N -0.442 5.442 5 C -0.344 4.344 6 H 0.096 0.904 7 C 0.066 3.934 8 N -0.848 5.848 9 Si 0.904 3.096 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.265 1.265 13 C 0.555 3.445 14 O -0.561 6.561 15 C -0.196 4.196 16 S 0.283 5.717 17 C -0.325 4.325 18 C -0.147 4.147 19 C -0.072 4.072 20 C 0.129 3.871 21 N -0.522 5.522 22 C 0.026 3.974 23 C 0.034 3.966 24 H 0.206 0.794 25 H 0.129 0.871 26 H 0.082 0.918 27 H 0.278 0.722 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.025 0.975 31 H 0.092 0.908 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 7.280 -1.365 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.153 4.153 3 C 0.093 3.907 4 N -0.162 5.162 5 C -0.478 4.478 6 H 0.113 0.887 7 C -0.145 4.145 8 N -0.482 5.482 9 Si 0.728 3.272 10 H -0.182 1.182 11 H -0.201 1.201 12 H -0.190 1.190 13 C 0.344 3.656 14 O -0.445 6.445 15 C -0.319 4.319 16 S 0.558 5.442 17 C -0.462 4.462 18 C -0.179 4.179 19 C -0.087 4.087 20 C 0.000 4.000 21 N -0.245 5.245 22 C -0.122 4.122 23 C -0.114 4.114 24 H 0.223 0.777 25 H 0.146 0.854 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.134 0.866 30 H 0.043 0.957 31 H 0.111 0.889 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.153 5.533 -1.704 5.792 hybrid contribution -0.260 1.996 -0.151 2.019 sum -0.107 7.530 -1.855 7.756 Atomic orbital electron populations 1.24593 0.95637 1.03766 1.03928 1.24512 0.95605 0.97715 0.97497 1.18548 0.81124 0.96186 0.94881 1.43055 1.56972 1.05060 1.11088 1.19222 1.26841 1.18634 0.83071 0.88725 1.25655 0.93920 0.95659 0.99247 1.69674 1.29066 1.17657 1.31765 0.86321 0.79542 0.79263 0.82097 1.18187 1.20142 1.19008 1.17290 0.79607 0.82483 0.86251 1.90686 1.54463 1.82174 1.17158 1.24519 1.11574 0.96784 0.98980 1.84499 1.56758 0.97015 1.05969 1.26333 1.10135 1.06990 1.02696 1.19537 1.05585 0.99756 0.93002 1.19014 1.02255 0.91593 0.95823 1.20570 0.94229 0.96419 0.88764 1.61764 1.06693 1.54470 1.01541 1.22392 0.94074 0.93930 1.01825 1.22284 1.01133 0.97855 0.90141 0.77694 0.85360 0.90018 0.91080 0.83723 0.86612 0.95717 0.88949 0.96694 0.92141 0.91272 0.90963 0.92044 0.96855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.15 -3.42 13.62 -37.12 -0.51 -3.93 16 3 C 0.21 5.14 5.35 -6.83 -0.04 5.11 16 4 N -0.44 -11.04 2.44 -119.50 -0.29 -11.33 16 5 C -0.34 -8.32 6.71 -15.01 -0.10 -8.42 16 6 H 0.10 2.22 5.51 -33.97 -0.19 2.03 16 7 C 0.07 1.56 5.34 -17.45 -0.09 1.47 16 8 N -0.85 -20.94 11.26 55.50 0.62 -20.32 16 9 Si 0.90 18.06 29.56 -169.99 -5.02 13.03 16 10 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 11 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 13 C 0.55 13.85 7.52 -12.95 -0.10 13.75 16 14 O -0.56 -14.63 13.97 5.15 0.07 -14.56 16 15 C -0.20 -4.38 6.30 -36.81 -0.23 -4.61 16 16 S 0.28 5.57 18.41 -107.50 -1.98 3.59 16 17 C -0.32 -5.57 10.92 29.19 0.32 -5.25 16 18 C -0.15 -2.57 9.18 -41.41 -0.38 -2.95 16 19 C -0.07 -1.42 4.54 -105.44 -0.48 -1.90 16 20 C 0.13 2.40 4.32 -4.98 -0.02 2.38 16 21 N -0.52 -9.51 4.67 -252.72 -1.18 -10.69 16 22 C 0.03 0.41 9.33 60.06 0.56 0.97 16 23 C 0.03 0.53 9.57 60.07 0.57 1.10 16 24 H 0.21 3.10 7.80 -54.08 -0.42 2.68 16 25 H 0.13 3.15 5.84 -51.93 -0.30 2.85 16 26 H 0.08 1.99 7.53 -51.93 -0.39 1.59 16 27 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 29 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.09 1.89 6.77 -51.93 -0.35 1.54 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 34 H 0.07 1.15 6.72 -51.93 -0.35 0.80 16 35 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 36 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -27.59 326.89 -7.29 -34.88 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.51 Total: 7.33 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 0.08 Total: -6.85 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.85 Total: -42.35 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.07 Total: -14.56 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.98 Total: 3.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.59 -7.29 -34.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281983371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.317 kcal (2) G-P(sol) polarization free energy of solvation -27.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds