Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48503 * 109.46996 * 270.00549 * 3 2 1 5 5 H 1.48494 * 109.47356 * 30.00293 * 3 2 1 6 6 H 1.48498 * 109.47167 * 150.00500 * 3 2 1 7 7 C 1.37878 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00141 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00300 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00191 * 269.99752 * 10 9 7 12 12 C 1.52992 * 109.47112 * 270.00373 * 11 10 9 13 13 C 1.53007 * 117.49558 * 243.74194 * 12 11 10 14 14 C 1.53007 * 117.49738 * 175.08563 * 12 11 10 15 15 C 1.34781 * 120.00439 * 90.00205 * 10 9 7 16 16 O 1.21783 * 119.99565 * 359.97438 * 15 10 9 17 17 C 1.41539 * 120.00330 * 179.72586 * 15 10 9 18 18 C 1.35561 * 119.99794 * 180.27560 * 17 15 10 19 19 C 1.41728 * 119.99630 * 180.02562 * 18 17 15 20 20 C 1.37071 * 126.18625 * 179.71165 * 19 18 17 21 21 N 1.30959 * 113.84360 * 179.82227 * 20 19 18 22 22 C 1.29354 * 117.49404 * 0.48554 * 21 20 19 23 23 S 1.70914 * 110.65020 * 359.72845 * 22 21 20 24 24 H 0.97001 * 119.99696 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47260 * 59.99797 * 9 7 2 26 26 H 1.09006 * 109.47035 * 300.00551 * 9 7 2 27 27 H 1.09003 * 109.46679 * 30.00209 * 11 10 9 28 28 H 1.09002 * 109.47239 * 149.99802 * 11 10 9 29 29 H 1.08999 * 115.55554 * 29.41493 * 12 11 10 30 30 H 1.08991 * 117.50073 * 0.02562 * 13 12 11 31 31 H 1.09004 * 117.49593 * 145.02423 * 13 12 11 32 32 H 1.09000 * 117.49951 * 214.97984 * 14 12 11 33 33 H 1.08997 * 117.49553 * 359.97438 * 14 12 11 34 34 H 1.08001 * 120.00225 * 0.26979 * 17 15 10 35 35 H 1.08002 * 120.00511 * 359.97438 * 18 17 15 36 36 H 1.07996 * 123.08008 * 359.97438 * 20 19 18 37 37 H 1.08000 * 124.67673 * 179.74433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7481 -5.3006 -1.7109 13 6 2.3394 -6.7092 -1.7965 14 6 2.0098 -5.9381 -3.0770 15 6 2.6408 -4.1250 1.1667 16 8 2.2455 -3.6619 2.2213 17 6 3.5561 -5.2046 1.1666 18 6 3.9922 -5.7235 2.3406 19 6 4.9091 -6.8042 2.3406 20 6 5.4347 -7.4197 3.4468 21 7 6.2590 -8.3980 3.1669 22 6 6.4805 -8.6535 1.9183 23 16 5.5856 -7.5948 0.9185 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.6867 -3.3878 -2.0289 28 1 3.6884 -4.5596 -1.1390 29 1 0.7109 -5.2089 -1.3887 30 1 3.3912 -6.8301 -1.5377 31 1 1.6909 -7.5442 -1.5309 32 1 1.1447 -6.2659 -3.6534 33 1 2.8447 -5.5512 -3.6612 34 1 3.9070 -5.6152 0.2313 35 1 3.6416 -5.3129 3.2760 36 1 5.1895 -7.1264 4.4569 37 1 7.1398 -9.4290 1.5573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282236825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = 56.729585 kcal Electronic energy + Delta-G solvation = -20428.153953 eV Core-core repulsion = 17298.951838 eV Total energy + Delta-G solvation = -3129.202116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82452 -39.37970 -37.25420 -34.77801 -34.09368 -32.53683 -29.74243 -27.87231 -26.55334 -25.65780 -23.57423 -22.32663 -21.57129 -20.66158 -20.42672 -18.56714 -17.62837 -17.19164 -16.45977 -15.58366 -15.42663 -14.85122 -14.69950 -14.50066 -14.33853 -14.16221 -13.58215 -13.41478 -13.03066 -12.63460 -12.26720 -11.93562 -11.54342 -11.45701 -11.32941 -11.18180 -10.93984 -10.85697 -10.60980 -10.35644 -10.11224 -9.96865 -9.84707 -9.62376 -9.39334 -9.02562 -8.43541 -8.33582 -7.66084 -6.04326 -4.09044 -0.09371 1.08863 1.49262 1.78201 2.77159 3.30117 3.36976 3.41330 3.78501 3.98426 4.02710 4.13388 4.45318 4.77310 4.92407 4.97177 5.01023 5.03647 5.12363 5.17843 5.29956 5.49847 5.61553 5.66880 5.82487 5.91515 5.96604 6.05688 6.15453 6.19346 6.31516 6.44487 7.08144 7.43732 7.44774 7.52831 7.92013 8.22960 8.37888 8.88693 9.05261 9.55924 11.03708 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.004248 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.969094 B = 6589.191805 C = 7627.061290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.586 5.586 11 C 0.140 3.860 12 C -0.165 4.165 13 C -0.184 4.184 14 C -0.175 4.175 15 C 0.536 3.464 16 O -0.543 6.543 17 C -0.179 4.179 18 C -0.018 4.018 19 C -0.194 4.194 20 C 0.055 3.945 21 N -0.470 5.470 22 C 0.002 3.998 23 S 0.151 5.849 24 H 0.263 0.737 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.151 0.849 36 H 0.184 0.816 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.085 -17.560 -3.024 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.316 5.316 11 C 0.016 3.984 12 C -0.185 4.185 13 C -0.221 4.221 14 C -0.213 4.213 15 C 0.326 3.674 16 O -0.423 6.423 17 C -0.203 4.203 18 C -0.040 4.040 19 C -0.315 4.315 20 C -0.101 4.101 21 N -0.183 5.183 22 C -0.292 4.292 23 S 0.407 5.593 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.140 0.860 35 H 0.169 0.831 36 H 0.200 0.800 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 9.940 -17.447 -3.199 20.333 hybrid contribution 0.263 1.089 0.652 1.296 sum 10.203 -16.358 -2.547 19.447 Atomic orbital electron populations 1.69932 1.05986 1.27004 1.50415 1.24924 0.94869 0.99181 0.95061 0.86504 0.79884 0.83100 0.77986 1.20643 1.21081 1.19894 1.21425 0.93351 0.90617 1.51096 0.92452 1.19307 0.87500 0.82067 0.98531 1.48146 1.45181 1.34382 1.03917 1.21070 0.95086 0.94825 0.87457 1.22945 1.01528 0.93796 1.00187 1.23041 1.01303 0.95369 1.02423 1.22915 1.03391 1.04304 0.90688 1.16794 0.82515 0.83514 0.84597 1.90813 1.58680 1.62270 1.30569 1.22545 1.00511 0.99169 0.98072 1.20553 0.92113 0.91174 1.00163 1.24065 1.06965 1.04764 0.95691 1.22657 0.94979 0.92503 0.99931 1.66024 1.16437 1.16987 1.18826 1.28514 1.04708 1.04567 0.91409 1.83993 1.37450 1.26835 1.11064 0.92720 0.94852 0.93733 0.89268 0.91496 0.87301 0.89135 0.89102 0.88937 0.88718 0.85988 0.83129 0.79956 0.78483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 10 N -0.59 -12.32 2.46 -178.50 -0.44 -12.75 16 11 C 0.14 2.25 5.37 -4.04 -0.02 2.23 16 12 C -0.17 -2.28 6.01 -90.62 -0.54 -2.82 16 13 C -0.18 -2.01 9.85 -26.69 -0.26 -2.27 16 14 C -0.18 -1.91 10.25 -26.69 -0.27 -2.18 16 15 C 0.54 11.21 7.44 -15.00 -0.11 11.10 16 16 O -0.54 -13.61 15.69 5.11 0.08 -13.53 16 17 C -0.18 -2.82 8.58 -39.28 -0.34 -3.15 16 18 C -0.02 -0.25 9.39 -39.21 -0.37 -0.62 16 19 C -0.19 -2.29 6.26 -38.67 -0.24 -2.53 16 20 C 0.05 0.62 11.38 -18.35 -0.21 0.41 16 21 N -0.47 -5.35 10.50 -15.06 -0.16 -5.51 16 22 C 0.00 0.02 12.20 51.72 0.63 0.65 16 23 S 0.15 1.41 21.97 -107.50 -2.36 -0.95 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 27 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 28 H 0.07 0.92 5.83 -51.93 -0.30 0.62 16 29 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 30 H 0.09 0.89 7.39 -51.93 -0.38 0.50 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.12 1.62 4.13 -52.49 -0.22 1.40 16 35 H 0.15 2.19 7.46 -52.49 -0.39 1.80 16 36 H 0.18 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -33.37 334.68 -8.91 -42.28 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.60 Total: 0.75 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.19 Total: -6.38 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.14 Total: -43.99 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.36 Total: -0.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.37 -8.91 -42.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282236825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.005 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds