Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48503 * 109.46996 * 270.00549 * 3 2 1 5 5 H 1.48494 * 109.47356 * 30.00293 * 3 2 1 6 6 H 1.48498 * 109.47167 * 150.00500 * 3 2 1 7 7 C 1.37878 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00141 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00300 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00191 * 269.99752 * 10 9 7 12 12 C 1.52992 * 109.47112 * 270.00373 * 11 10 9 13 13 C 1.53007 * 117.49558 * 243.74194 * 12 11 10 14 14 C 1.53007 * 117.49738 * 175.08563 * 12 11 10 15 15 C 1.34781 * 120.00439 * 90.00205 * 10 9 7 16 16 O 1.21783 * 119.99565 * 359.97438 * 15 10 9 17 17 C 1.41539 * 120.00330 * 179.72586 * 15 10 9 18 18 C 1.35561 * 119.99794 * 180.27560 * 17 15 10 19 19 C 1.41728 * 119.99630 * 180.02562 * 18 17 15 20 20 C 1.37071 * 126.18625 * 179.71165 * 19 18 17 21 21 N 1.30959 * 113.84360 * 179.82227 * 20 19 18 22 22 C 1.29354 * 117.49404 * 0.48554 * 21 20 19 23 23 S 1.70914 * 110.65020 * 359.72845 * 22 21 20 24 24 H 0.97001 * 119.99696 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47260 * 59.99797 * 9 7 2 26 26 H 1.09006 * 109.47035 * 300.00551 * 9 7 2 27 27 H 1.09003 * 109.46679 * 30.00209 * 11 10 9 28 28 H 1.09002 * 109.47239 * 149.99802 * 11 10 9 29 29 H 1.08999 * 115.55554 * 29.41493 * 12 11 10 30 30 H 1.08991 * 117.50073 * 0.02562 * 13 12 11 31 31 H 1.09004 * 117.49593 * 145.02423 * 13 12 11 32 32 H 1.09000 * 117.49951 * 214.97984 * 14 12 11 33 33 H 1.08997 * 117.49553 * 359.97438 * 14 12 11 34 34 H 1.08001 * 120.00225 * 0.26979 * 17 15 10 35 35 H 1.08002 * 120.00511 * 359.97438 * 18 17 15 36 36 H 1.07996 * 123.08008 * 359.97438 * 20 19 18 37 37 H 1.08000 * 124.67673 * 179.74433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7481 -5.3006 -1.7109 13 6 2.3394 -6.7092 -1.7965 14 6 2.0098 -5.9381 -3.0770 15 6 2.6408 -4.1250 1.1667 16 8 2.2455 -3.6619 2.2213 17 6 3.5561 -5.2046 1.1666 18 6 3.9922 -5.7235 2.3406 19 6 4.9091 -6.8042 2.3406 20 6 5.4347 -7.4197 3.4468 21 7 6.2590 -8.3980 3.1669 22 6 6.4805 -8.6535 1.9183 23 16 5.5856 -7.5948 0.9185 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.6867 -3.3878 -2.0289 28 1 3.6884 -4.5596 -1.1390 29 1 0.7109 -5.2089 -1.3887 30 1 3.3912 -6.8301 -1.5377 31 1 1.6909 -7.5442 -1.5309 32 1 1.1447 -6.2659 -3.6534 33 1 2.8447 -5.5512 -3.6612 34 1 3.9070 -5.6152 0.2313 35 1 3.6416 -5.3129 3.2760 36 1 5.1895 -7.1264 4.4569 37 1 7.1398 -9.4290 1.5573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282236825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = 35.949696 kcal Electronic energy + Delta-G solvation = -20429.055037 eV Core-core repulsion = 17298.951838 eV Total energy + Delta-G solvation = -3130.103199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07866 -40.51815 -38.41480 -36.30488 -35.41143 -34.58415 -30.97730 -29.54922 -27.81589 -26.89486 -25.23361 -23.18728 -23.01792 -21.79718 -21.29576 -19.88717 -18.70781 -18.62126 -18.42096 -17.13370 -16.61625 -16.25151 -16.06194 -15.78051 -15.47594 -14.93292 -14.83860 -14.56223 -14.49811 -14.28530 -13.86205 -13.41886 -13.12413 -12.91044 -12.57748 -12.53643 -12.27307 -12.24264 -12.21012 -11.97625 -11.73064 -11.26070 -11.04977 -10.74616 -10.64101 -10.54565 -10.13830 -9.58782 -9.21073 -8.22084 -6.37433 -1.02865 0.30822 0.71243 0.71696 1.36306 1.39490 1.49974 1.86116 2.28624 2.44165 2.53996 2.97920 3.07037 3.40807 3.69536 3.87480 3.97778 4.02979 4.10257 4.15278 4.33954 4.35869 4.42571 4.72249 4.81062 4.84593 4.92745 5.04462 5.08158 5.14880 5.18544 5.29979 5.31989 5.34260 5.56298 5.84694 6.05905 6.64682 6.69093 6.76782 7.27076 7.44635 8.84884 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.004248 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.969094 B = 6589.191805 C = 7627.061290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.263 3.737 10 N -0.594 5.594 11 C 0.140 3.860 12 C -0.196 4.196 13 C -0.165 4.165 14 C -0.157 4.157 15 C 0.532 3.468 16 O -0.605 6.605 17 C -0.212 4.212 18 C 0.024 3.976 19 C -0.242 4.242 20 C 0.074 3.926 21 N -0.503 5.503 22 C 0.024 3.976 23 S 0.198 5.802 24 H 0.267 0.733 25 H 0.022 0.978 26 H -0.003 1.003 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.194 0.806 37 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 -19.712 -4.359 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.142 3.858 10 N -0.322 5.322 11 C 0.018 3.982 12 C -0.215 4.215 13 C -0.201 4.201 14 C -0.195 4.195 15 C 0.325 3.675 16 O -0.490 6.490 17 C -0.235 4.235 18 C 0.001 3.999 19 C -0.363 4.363 20 C -0.083 4.083 21 N -0.216 5.216 22 C -0.269 4.269 23 S 0.454 5.546 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.015 0.985 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.211 0.789 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 12.989 -19.632 -4.603 23.986 hybrid contribution -0.570 1.531 1.140 1.992 sum 12.419 -18.101 -3.463 22.223 Atomic orbital electron populations 1.70058 1.07595 1.28170 1.50977 1.25862 0.95797 1.03047 0.94353 0.85401 0.78240 0.78237 0.78846 1.18683 1.20567 1.19802 1.21693 0.93245 0.91900 1.51339 0.92886 1.18713 0.87919 0.83661 0.95556 1.48094 1.44457 1.33467 1.06200 1.21272 0.96995 0.95186 0.84754 1.22661 0.99790 0.95277 1.03816 1.23161 1.02234 0.93291 1.01459 1.23042 1.04131 1.02458 0.89830 1.17557 0.82427 0.84075 0.83463 1.90763 1.61183 1.64552 1.32460 1.22124 1.02131 0.99422 0.99825 1.20528 0.90150 0.90150 0.99035 1.23916 1.08777 1.05814 0.97806 1.22974 0.93392 0.91422 1.00516 1.66153 1.17572 1.17712 1.20120 1.29319 1.02998 1.03813 0.90742 1.83825 1.36109 1.25508 1.09167 0.92382 0.96001 0.98491 0.90517 0.88579 0.90216 0.87233 0.88273 0.88051 0.87093 0.83355 0.84640 0.78898 0.74648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.54 -32.07 9.39 25.60 0.24 -31.83 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.26 14.67 5.16 85.63 0.44 15.12 16 10 N -0.59 -26.41 2.46 -836.83 -2.06 -28.47 16 11 C 0.14 4.58 5.37 86.38 0.46 5.04 16 12 C -0.20 -5.39 6.01 -10.79 -0.06 -5.46 16 13 C -0.16 -3.16 9.85 30.62 0.30 -2.86 16 14 C -0.16 -3.06 10.25 30.62 0.31 -2.75 16 15 C 0.53 23.50 7.44 85.05 0.63 24.13 16 16 O -0.60 -32.69 15.69 -4.61 -0.07 -32.77 16 17 C -0.21 -6.69 8.58 22.46 0.19 -6.49 16 18 C 0.02 0.66 9.39 22.51 0.21 0.87 16 19 C -0.24 -5.22 6.26 22.86 0.14 -5.08 16 20 C 0.07 1.49 11.38 84.55 0.96 2.45 16 21 N -0.50 -9.74 10.50 -201.55 -2.12 -11.85 16 22 C 0.02 0.32 12.20 130.61 1.59 1.91 16 23 S 0.20 2.90 21.97 -56.49 -1.24 1.66 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 25 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 26 H 0.00 -0.20 7.42 -2.38 -0.02 -0.21 16 27 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 28 H 0.10 2.51 5.83 -2.39 -0.01 2.50 16 29 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.11 1.69 7.39 -2.39 -0.02 1.67 16 31 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.15 3.68 4.13 -2.91 -0.01 3.67 16 35 H 0.14 4.13 7.46 -2.91 -0.02 4.11 16 36 H 0.19 3.24 8.06 -2.91 -0.02 3.21 16 37 H 0.24 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -77.85 334.68 3.80 -74.05 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.08 Total: 10.57 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.90 Total: -3.98 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -3.89 Total: -97.06 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.07 Total: -32.77 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.24 Total: 1.66 kcal Total: -77.85 3.80 -74.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282236825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.996 kcal (2) G-P(sol) polarization free energy of solvation -77.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds