Wall clock time and date at job start Tue Mar 31 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46897 * 239.99761 * 3 2 1 5 5 H 1.48506 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47038 * 119.99408 * 3 2 1 7 7 C 1.37873 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99719 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46858 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99799 * 190.00197 * 10 9 7 12 12 C 1.52992 * 109.47232 * 75.73598 * 11 10 9 13 13 C 1.50703 * 109.47266 * 174.90283 * 12 11 10 14 14 C 1.33646 * 122.75110 * 124.73386 * 13 12 11 15 15 S 1.76196 * 107.92356 * 179.97438 * 14 13 12 16 16 C 1.70971 * 90.28286 * 0.27499 * 15 14 13 17 17 N 1.29030 * 110.17069 * 359.83757 * 16 15 14 18 18 C 1.46897 * 111.00251 * 66.04927 * 10 9 7 19 19 C 1.50699 * 109.47340 * 199.61304 * 18 10 9 20 20 C 1.34516 * 125.79393 * 84.84551 * 19 18 10 21 21 C 1.41381 * 106.84163 * 180.02562 * 20 19 18 22 22 C 1.34508 * 106.84156 * 359.97438 * 21 20 19 23 23 O 1.34305 * 108.42191 * 359.73993 * 22 21 20 24 24 H 0.97004 * 120.00401 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00086 * 9 7 2 26 26 H 1.08999 * 109.47160 * 299.99908 * 9 7 2 27 27 H 1.08998 * 109.47232 * 315.73511 * 11 10 9 28 28 H 1.09003 * 109.47215 * 195.73524 * 11 10 9 29 29 H 1.09004 * 109.47679 * 54.90239 * 12 11 10 30 30 H 1.08999 * 109.47418 * 294.89902 * 12 11 10 31 31 H 1.07999 * 126.03523 * 0.03472 * 14 13 12 32 32 H 1.08004 * 124.91439 * 179.84182 * 16 15 14 33 33 H 1.09007 * 109.46912 * 319.60742 * 18 10 9 34 34 H 1.08996 * 109.47529 * 79.60572 * 18 10 9 35 35 H 1.08004 * 126.57592 * 359.97261 * 20 19 18 36 36 H 1.08002 * 126.57285 * 179.97438 * 21 20 19 37 37 H 1.08000 * 125.79188 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5215 -4.8936 -0.2364 12 6 1.1586 -5.0094 -1.7181 13 6 0.5701 -6.3706 -1.9863 14 6 -0.6288 -6.5414 -2.5516 15 16 -0.9259 -8.2733 -2.6803 16 6 0.5879 -8.5955 -1.9538 17 7 1.1928 -7.4900 -1.6768 18 6 2.9700 -3.6535 1.2557 19 6 4.2272 -4.4596 1.0537 20 6 5.3886 -3.9952 0.5587 21 6 6.2913 -5.0832 0.5428 22 6 5.6278 -6.1472 1.0295 23 8 4.3798 -5.7622 1.3429 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.6132 -4.9369 0.3646 28 1 2.1807 -5.7160 0.0416 29 1 2.0552 -4.8755 -2.3234 30 1 0.4291 -4.2413 -1.9747 31 1 -1.2970 -5.7564 -2.8737 32 1 0.9809 -9.5818 -1.7554 33 1 3.2334 -2.6379 1.5514 34 1 2.3647 -4.1138 2.0365 35 1 5.5921 -2.9852 0.2348 36 1 7.3168 -5.0636 0.2047 37 1 6.0313 -7.1416 1.1514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283648763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:43 Heat of formation + Delta-G solvation = 65.410098 kcal Electronic energy + Delta-G solvation = -20620.292107 eV Core-core repulsion = 17491.466407 eV Total energy + Delta-G solvation = -3128.825700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.05931 -39.78941 -36.91319 -32.83729 -32.60086 -32.08323 -30.05145 -28.72623 -26.73688 -25.26891 -24.24996 -22.75674 -21.26270 -20.57970 -19.63478 -19.42941 -17.78581 -16.89288 -16.50949 -15.76217 -15.58321 -14.99821 -14.51482 -14.48579 -13.96807 -13.74578 -13.53187 -13.15701 -12.67831 -12.51156 -12.33379 -12.22692 -11.94828 -11.56218 -11.49662 -11.18104 -10.93386 -10.77644 -10.64743 -10.31423 -9.87460 -9.58031 -9.44540 -9.42616 -9.26652 -8.72409 -8.47434 -7.98378 -7.34370 -6.06421 -4.08235 0.77161 1.42856 1.75185 2.19921 2.90245 3.10056 3.32226 3.36608 3.39560 3.47846 4.28780 4.40562 4.89397 5.16891 5.22441 5.29738 5.36495 5.45899 5.47605 5.50857 5.75853 5.82093 6.01342 6.08767 6.23677 6.28219 6.35315 6.44431 6.51018 6.62219 6.63913 6.98498 7.17915 7.28425 7.64597 7.76660 7.81126 8.00650 8.12643 8.47608 8.99148 9.56516 11.04154 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005157 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.526640 B = 5428.553901 C = 7651.517138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.531 5.531 11 C 0.064 3.936 12 C -0.039 4.039 13 C 0.078 3.922 14 C -0.252 4.252 15 S 0.089 5.911 16 C 0.021 3.979 17 N -0.459 5.459 18 C 0.139 3.861 19 C 0.015 3.985 20 C -0.202 4.202 21 C -0.214 4.214 22 C -0.059 4.059 23 O -0.181 6.181 24 H 0.262 0.738 25 H 0.037 0.963 26 H -0.007 1.007 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.178 0.822 32 H 0.196 0.804 33 H 0.117 0.883 34 H 0.037 0.963 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 -15.790 -2.422 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.256 5.256 11 C -0.065 4.065 12 C -0.079 4.079 13 C -0.053 4.053 14 C -0.390 4.390 15 S 0.340 5.660 16 C -0.278 4.278 17 N -0.173 5.173 18 C 0.011 3.989 19 C -0.036 4.036 20 C -0.222 4.222 21 C -0.234 4.234 22 C -0.127 4.127 23 O -0.077 6.077 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.011 0.989 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.196 0.804 32 H 0.213 0.787 33 H 0.135 0.865 34 H 0.055 0.945 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.058 -16.424 -2.805 16.788 hybrid contribution 0.412 1.526 0.586 1.685 sum 2.470 -14.898 -2.219 15.264 Atomic orbital electron populations 1.69941 1.06066 1.26969 1.50688 1.24964 0.94824 0.99260 0.95286 0.86585 0.79485 0.82784 0.78731 1.20128 1.21388 1.20206 1.21129 0.93528 0.89870 1.50509 0.91749 1.19807 0.89901 0.86985 0.96501 1.62000 1.28078 1.03297 1.32233 1.21942 0.97050 0.93179 0.94307 1.20210 1.01323 0.88232 0.98149 1.20585 0.91454 0.95274 0.97977 1.26914 1.02383 0.98484 1.11251 1.83887 1.21956 1.02085 1.58030 1.28395 0.95505 1.01447 1.02483 1.66152 1.34567 0.97543 1.18996 1.20513 0.88299 0.98306 0.91816 1.22801 0.98175 0.81022 1.01589 1.21532 0.93136 1.00795 1.06736 1.21767 1.01051 0.93478 1.07064 1.23793 0.83192 1.00044 1.05638 1.84020 1.31182 1.26172 1.66293 0.92820 0.94509 0.98901 0.95674 0.91011 0.89391 0.89729 0.80419 0.78709 0.86464 0.94496 0.83596 0.84194 0.79021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.74 8.23 -34.44 -0.28 -14.02 16 8 H 0.06 1.70 7.31 -52.49 -0.38 1.32 16 9 C 0.19 4.79 4.55 -4.97 -0.02 4.77 16 10 N -0.53 -11.34 4.35 -237.52 -1.03 -12.37 16 11 C 0.06 1.23 4.75 -3.83 -0.02 1.21 16 12 C -0.04 -0.68 5.74 -27.89 -0.16 -0.84 16 13 C 0.08 1.22 6.08 -84.22 -0.51 0.71 16 14 C -0.25 -3.32 11.07 29.12 0.32 -3.00 16 15 S 0.09 0.93 23.22 -107.50 -2.50 -1.56 16 16 C 0.02 0.24 12.23 51.59 0.63 0.87 16 17 N -0.46 -7.03 10.24 -11.89 -0.12 -7.15 16 18 C 0.14 2.75 5.33 -4.98 -0.03 2.73 16 19 C 0.01 0.27 6.15 -35.62 -0.22 0.05 16 20 C -0.20 -3.55 10.81 -39.70 -0.43 -3.98 16 21 C -0.21 -3.22 10.91 -39.71 -0.43 -3.65 16 22 C -0.06 -0.85 12.09 29.41 0.36 -0.50 16 23 O -0.18 -3.17 10.19 5.70 0.06 -3.12 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.04 0.96 6.72 -51.93 -0.35 0.62 16 26 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 27 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 28 H 0.07 1.40 6.72 -51.93 -0.35 1.05 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.08 1.50 6.84 -51.93 -0.36 1.14 16 31 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.12 2.44 6.58 -51.92 -0.34 2.09 16 34 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 35 H 0.15 2.52 8.06 -52.48 -0.42 2.10 16 36 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -30.58 330.57 -8.49 -39.07 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.70 Total: 3.31 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.89 Total: -14.14 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.42 Total: -44.62 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: 0.06 Total: -3.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.58 -8.49 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283648763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.478 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds