Wall clock time and date at job start Tue Mar 31 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46897 * 239.99761 * 3 2 1 5 5 H 1.48506 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47038 * 119.99408 * 3 2 1 7 7 C 1.37873 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99719 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46858 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99799 * 190.00197 * 10 9 7 12 12 C 1.52992 * 109.47232 * 75.73598 * 11 10 9 13 13 C 1.50703 * 109.47266 * 174.90283 * 12 11 10 14 14 C 1.33646 * 122.75110 * 124.73386 * 13 12 11 15 15 S 1.76196 * 107.92356 * 179.97438 * 14 13 12 16 16 C 1.70971 * 90.28286 * 0.27499 * 15 14 13 17 17 N 1.29030 * 110.17069 * 359.83757 * 16 15 14 18 18 C 1.46897 * 111.00251 * 66.04927 * 10 9 7 19 19 C 1.50699 * 109.47340 * 199.61304 * 18 10 9 20 20 C 1.34516 * 125.79393 * 84.84551 * 19 18 10 21 21 C 1.41381 * 106.84163 * 180.02562 * 20 19 18 22 22 C 1.34508 * 106.84156 * 359.97438 * 21 20 19 23 23 O 1.34305 * 108.42191 * 359.73993 * 22 21 20 24 24 H 0.97004 * 120.00401 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00086 * 9 7 2 26 26 H 1.08999 * 109.47160 * 299.99908 * 9 7 2 27 27 H 1.08998 * 109.47232 * 315.73511 * 11 10 9 28 28 H 1.09003 * 109.47215 * 195.73524 * 11 10 9 29 29 H 1.09004 * 109.47679 * 54.90239 * 12 11 10 30 30 H 1.08999 * 109.47418 * 294.89902 * 12 11 10 31 31 H 1.07999 * 126.03523 * 0.03472 * 14 13 12 32 32 H 1.08004 * 124.91439 * 179.84182 * 16 15 14 33 33 H 1.09007 * 109.46912 * 319.60742 * 18 10 9 34 34 H 1.08996 * 109.47529 * 79.60572 * 18 10 9 35 35 H 1.08004 * 126.57592 * 359.97261 * 20 19 18 36 36 H 1.08002 * 126.57285 * 179.97438 * 21 20 19 37 37 H 1.08000 * 125.79188 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5215 -4.8936 -0.2364 12 6 1.1586 -5.0094 -1.7181 13 6 0.5701 -6.3706 -1.9863 14 6 -0.6288 -6.5414 -2.5516 15 16 -0.9259 -8.2733 -2.6803 16 6 0.5879 -8.5955 -1.9538 17 7 1.1928 -7.4900 -1.6768 18 6 2.9700 -3.6535 1.2557 19 6 4.2272 -4.4596 1.0537 20 6 5.3886 -3.9952 0.5587 21 6 6.2913 -5.0832 0.5428 22 6 5.6278 -6.1472 1.0295 23 8 4.3798 -5.7622 1.3429 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.6132 -4.9369 0.3646 28 1 2.1807 -5.7160 0.0416 29 1 2.0552 -4.8755 -2.3234 30 1 0.4291 -4.2413 -1.9747 31 1 -1.2970 -5.7564 -2.8737 32 1 0.9809 -9.5818 -1.7554 33 1 3.2334 -2.6379 1.5514 34 1 2.3647 -4.1138 2.0365 35 1 5.5921 -2.9852 0.2348 36 1 7.3168 -5.0636 0.2047 37 1 6.0313 -7.1416 1.1514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283648763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:43 Heat of formation + Delta-G solvation = 46.161100 kcal Electronic energy + Delta-G solvation = -20621.126806 eV Core-core repulsion = 17491.466407 eV Total energy + Delta-G solvation = -3129.660400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.36108 -40.86584 -38.60073 -34.80656 -33.96507 -33.43327 -31.44097 -30.20558 -28.46326 -26.51627 -25.63163 -24.48170 -22.60348 -22.10049 -21.09717 -20.51306 -18.82194 -18.56803 -18.13888 -17.21930 -16.77343 -16.62143 -16.06958 -15.84840 -15.50389 -15.21505 -14.91513 -14.24904 -14.07795 -14.06581 -13.70975 -13.61867 -13.46514 -13.14945 -13.02962 -12.87093 -12.60633 -12.51844 -12.24763 -12.01740 -11.67754 -11.29195 -10.72983 -10.59183 -10.56442 -10.40667 -9.72336 -9.31840 -9.11113 -8.18297 -6.27581 -0.19005 0.51204 0.78704 0.90406 1.43977 1.46223 1.53874 1.80245 1.84073 2.19565 2.42545 3.14922 3.23441 3.43120 3.86283 4.00675 4.14814 4.20738 4.25983 4.33488 4.42414 4.53561 4.55890 4.62092 4.70396 4.94834 4.98877 5.03707 5.14874 5.22060 5.22908 5.24793 5.32516 5.66569 5.73491 6.03593 6.23504 6.34186 6.55650 6.81573 6.86799 7.41747 8.92546 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005157 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.526640 B = 5428.553901 C = 7651.517138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.524 4.524 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.534 5.534 11 C 0.075 3.925 12 C -0.029 4.029 13 C 0.054 3.946 14 C -0.267 4.267 15 S 0.165 5.835 16 C 0.019 3.981 17 N -0.500 5.500 18 C 0.143 3.857 19 C -0.013 4.013 20 C -0.208 4.208 21 C -0.222 4.222 22 C -0.044 4.044 23 O -0.195 6.195 24 H 0.264 0.736 25 H 0.018 0.982 26 H -0.035 1.035 27 H 0.014 0.986 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.187 0.813 32 H 0.232 0.768 33 H 0.102 0.898 34 H 0.036 0.964 35 H 0.142 0.858 36 H 0.171 0.829 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -17.653 -2.937 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.259 5.259 11 C -0.054 4.054 12 C -0.070 4.070 13 C -0.078 4.078 14 C -0.406 4.406 15 S 0.418 5.582 16 C -0.279 4.279 17 N -0.214 5.214 18 C 0.015 3.985 19 C -0.063 4.063 20 C -0.228 4.228 21 C -0.241 4.241 22 C -0.111 4.111 23 O -0.092 6.092 24 H 0.073 0.927 25 H 0.036 0.964 26 H -0.017 1.017 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.204 0.796 32 H 0.248 0.752 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.160 0.840 36 H 0.188 0.812 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.227 -18.311 -3.322 18.887 hybrid contribution 0.037 1.922 0.727 2.055 sum 3.264 -16.389 -2.595 16.911 Atomic orbital electron populations 1.70066 1.07617 1.27921 1.51601 1.25810 0.95630 1.02838 0.94763 0.85518 0.78234 0.78288 0.79091 1.19482 1.20988 1.19245 1.21406 0.93666 0.90842 1.50263 0.91735 1.19448 0.89843 0.88104 0.94204 1.61984 1.27295 1.03320 1.33271 1.21865 0.96168 0.91822 0.95498 1.19965 1.00545 0.90021 0.96456 1.20266 0.92662 0.94584 1.00276 1.27155 1.01776 1.01360 1.10291 1.83618 1.20042 0.98483 1.56078 1.29016 0.95991 1.01848 1.01001 1.66111 1.36087 0.98226 1.20993 1.20321 0.89076 0.98050 0.91043 1.22381 0.97794 0.81880 1.04241 1.21741 0.93608 1.01512 1.05969 1.22096 1.02192 0.92465 1.07363 1.24750 0.81604 1.01704 1.03054 1.84000 1.32973 1.25474 1.66704 0.92692 0.96384 1.01706 0.96730 0.91058 0.90742 0.90890 0.79624 0.75213 0.88009 0.94589 0.84028 0.81187 0.74471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.52 -29.07 8.23 25.60 0.21 -28.86 16 8 H 0.06 3.51 7.31 -2.91 -0.02 3.49 16 9 C 0.21 11.04 4.55 85.56 0.39 11.43 16 10 N -0.53 -24.04 4.35 -905.37 -3.93 -27.97 16 11 C 0.08 3.03 4.75 86.30 0.41 3.44 16 12 C -0.03 -1.08 5.74 29.85 0.17 -0.91 16 13 C 0.05 1.69 6.08 41.52 0.25 1.95 16 14 C -0.27 -6.88 11.07 66.78 0.74 -6.14 16 15 S 0.17 3.04 23.22 -56.49 -1.31 1.73 16 16 C 0.02 0.40 12.23 130.65 1.60 1.99 16 17 N -0.50 -14.95 10.24 -191.54 -1.96 -16.92 16 18 C 0.14 5.96 5.33 85.56 0.46 6.41 16 19 C -0.01 -0.48 6.15 24.83 0.15 -0.33 16 20 C -0.21 -7.26 10.81 22.19 0.24 -7.02 16 21 C -0.22 -6.16 10.91 22.19 0.24 -5.92 16 22 C -0.04 -1.16 12.09 66.97 0.81 -0.35 16 23 O -0.19 -6.69 10.19 -2.52 -0.03 -6.71 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.02 1.01 6.72 -2.39 -0.02 1.00 16 26 H -0.03 -1.99 8.12 -2.39 -0.02 -2.01 16 27 H 0.01 0.61 8.00 -2.39 -0.02 0.59 16 28 H 0.07 2.88 6.72 -2.39 -0.02 2.87 16 29 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.07 2.78 6.84 -2.39 -0.02 2.76 16 31 H 0.19 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.23 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.10 4.48 6.58 -2.38 -0.02 4.46 16 34 H 0.04 1.47 8.00 -2.39 -0.02 1.45 16 35 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.24 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -68.02 330.57 2.28 -65.74 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.07 Total: 16.57 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 6.13 Total: -23.39 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -5.61 Total: -99.68 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.03 Total: -6.71 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.31 Total: 1.73 kcal Total: -68.02 2.28 -65.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283648763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.901 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds