Wall clock time and date at job start Tue Mar 31 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99997 * 2 1 4 4 N 1.46498 * 109.47259 * 125.00111 * 3 2 1 5 5 C 1.46496 * 119.99742 * 270.00290 * 4 3 2 6 6 C 1.50709 * 109.47033 * 269.99810 * 5 4 3 7 7 H 1.08003 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00105 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00157 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00060 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47346 * 59.99545 * 10 8 6 12 12 H 1.48498 * 109.47217 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46935 * 299.99981 * 10 8 6 14 14 C 1.34776 * 120.00223 * 89.99503 * 4 3 2 15 15 O 1.21277 * 120.00300 * 180.02562 * 14 4 3 16 16 C 1.50700 * 119.99821 * 0.02562 * 14 4 3 17 17 S 1.81404 * 109.47023 * 179.97438 * 16 14 4 18 18 C 1.76200 * 102.99864 * 179.97438 * 17 16 14 19 19 C 1.39542 * 120.87285 * 359.71968 * 18 17 16 20 20 C 1.37866 * 119.05886 * 180.29714 * 19 18 17 21 21 N 1.32014 * 120.85190 * 359.97204 * 20 19 18 22 22 C 1.32012 * 121.92014 * 0.02562 * 21 20 19 23 23 C 1.37861 * 120.85403 * 0.02562 * 22 21 20 24 24 H 1.08001 * 120.00040 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99613 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99932 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47096 * 4.99749 * 3 2 1 28 28 H 1.09007 * 109.47057 * 244.99747 * 3 2 1 29 29 H 1.09004 * 109.47462 * 29.99526 * 5 4 3 30 30 H 1.09004 * 109.47242 * 149.99829 * 5 4 3 31 31 H 0.97003 * 120.00068 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47674 * 59.99405 * 16 14 4 33 33 H 1.09006 * 109.47002 * 299.99436 * 16 14 4 34 34 H 1.08005 * 120.47247 * 0.25131 * 19 18 17 35 35 H 1.08000 * 119.57367 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.57604 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.47580 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3040 3.8370 1.6367 8 6 2.5193 4.0666 3.6085 9 7 1.9599 3.4658 4.6359 10 14 2.8737 5.8993 3.6776 11 1 2.1380 6.5873 2.5865 12 1 2.4327 6.4397 4.9886 13 1 4.3317 6.1281 3.5124 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9191 16 6 4.6972 0.3182 -0.3482 17 16 6.4241 -0.2244 -0.2288 18 6 6.7641 -0.8242 -1.8504 19 6 5.7837 -0.7996 -2.8431 20 6 6.0885 -1.2841 -4.0973 21 7 7.2884 -1.7657 -4.3639 22 6 8.2425 -1.8062 -3.4525 23 6 8.0189 -1.3424 -2.1736 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4026 -0.9314 29 1 1.4887 1.6966 2.5458 30 1 3.0990 1.3603 3.2259 31 1 1.7310 3.9745 5.4295 32 1 4.6126 1.0950 -1.1081 33 1 4.0681 -0.5286 -0.6227 34 1 4.7999 -0.4073 -2.6317 35 1 5.3358 -1.2695 -4.8717 36 1 9.2106 -2.2086 -3.7117 37 1 8.8040 -1.3781 -1.4329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292498968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:07 Heat of formation + Delta-G solvation = 27.166799 kcal Electronic energy + Delta-G solvation = -20086.586120 eV Core-core repulsion = 16956.102065 eV Total energy + Delta-G solvation = -3130.484054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04986 -39.24575 -35.86557 -33.33329 -32.75365 -32.21504 -31.59830 -30.13938 -27.29274 -25.55454 -23.98074 -23.65393 -22.74886 -20.14522 -18.99186 -18.02648 -16.83988 -16.53206 -16.48479 -15.92864 -15.80746 -15.26318 -15.00192 -14.63372 -14.24554 -14.12071 -13.83914 -13.47014 -13.21206 -12.71419 -12.62943 -12.08894 -12.01674 -11.82984 -11.36543 -11.16528 -10.98160 -10.77472 -10.66466 -10.46669 -10.25507 -9.75841 -9.61107 -9.42900 -9.32488 -9.24085 -8.49614 -7.89872 -7.65815 -6.11027 -4.16607 0.88789 0.93041 1.19478 2.21332 2.33548 3.09963 3.28000 3.32964 3.36221 3.57076 3.76577 4.24383 4.38612 4.56109 4.73800 4.76721 4.89671 4.94929 5.03410 5.17656 5.23411 5.24721 5.29953 5.47957 5.53182 5.58037 5.78776 5.89129 6.04789 6.42222 6.66737 6.76504 6.91936 7.31645 7.38321 7.76879 7.83805 8.13127 8.16836 8.71240 8.89558 9.48709 10.97125 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.003807 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.849061 B = 7354.046087 C = 8185.080868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.134 3.866 4 N -0.585 5.585 5 C 0.249 3.751 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.523 3.477 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.005 6.005 18 C -0.058 4.058 19 C -0.194 4.194 20 C 0.118 3.882 21 N -0.499 5.499 22 C 0.115 3.885 23 C -0.158 4.158 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 -9.548 -15.851 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.010 3.990 4 N -0.316 5.316 5 C 0.130 3.870 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.307 3.693 15 O -0.396 6.396 16 C -0.304 4.304 17 S 0.240 5.760 18 C -0.180 4.180 19 C -0.221 4.221 20 C -0.040 4.040 21 N -0.210 5.210 22 C -0.043 4.043 23 C -0.185 4.185 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.176 0.824 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.785 -9.682 -14.885 18.391 hybrid contribution -1.060 1.272 -0.233 1.672 sum 3.726 -8.410 -15.119 17.697 Atomic orbital electron populations 1.23851 0.95804 1.01936 0.99801 1.23389 0.96496 0.98806 1.00603 1.20645 0.93217 0.95729 0.89419 1.48166 1.09755 1.59676 1.13995 1.19350 0.95577 0.93876 0.78190 1.21366 1.41054 0.93167 1.01430 0.92433 1.24922 0.94906 0.98858 0.95250 1.69918 1.41684 1.36377 1.05178 0.86549 0.78914 0.84702 0.77224 1.20219 1.21109 1.20089 1.19258 0.83125 0.79298 0.87641 1.90738 1.52121 1.55808 1.40950 1.24061 0.97982 1.05423 1.02925 1.86459 1.11811 1.73164 1.04613 1.22836 0.97010 0.98602 0.99520 1.22155 1.00003 1.05035 0.94889 1.22634 0.93761 0.92668 0.94933 1.67749 1.01418 1.16101 1.35731 1.22678 0.98120 0.94801 0.88679 1.21747 0.96245 1.01682 0.98802 0.88635 0.88145 0.87818 0.88993 0.90931 0.94630 0.93680 0.92550 0.86825 0.86959 0.84765 0.82618 0.82408 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.32 29.01 0.42 -1.66 16 2 C -0.17 -2.23 9.74 -36.03 -0.35 -2.58 16 3 C 0.13 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.58 -11.60 2.44 -176.43 -0.43 -12.03 16 5 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 6 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 10 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.52 10.26 7.69 -10.99 -0.08 10.18 16 15 O -0.52 -12.61 15.44 5.56 0.09 -12.52 16 16 C -0.15 -2.11 3.41 36.01 0.12 -1.99 16 17 S 0.00 -0.07 21.10 -107.50 -2.27 -2.34 16 18 C -0.06 -0.69 6.17 -38.60 -0.24 -0.93 16 19 C -0.19 -2.03 9.43 -39.23 -0.37 -2.40 16 20 C 0.12 1.19 11.17 -17.61 -0.20 0.99 16 21 N -0.50 -5.66 10.36 -13.36 -0.14 -5.80 16 22 C 0.11 1.14 11.17 -17.61 -0.20 0.95 16 23 C -0.16 -1.68 9.90 -39.23 -0.39 -2.07 16 24 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 25 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 26 H 0.10 1.24 7.83 -52.48 -0.41 0.83 16 27 H 0.09 1.43 7.72 -51.93 -0.40 1.02 16 28 H 0.07 0.85 6.44 -51.92 -0.33 0.51 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.11 1.34 7.07 -51.93 -0.37 0.97 16 33 H 0.11 1.26 7.42 -51.92 -0.39 0.88 16 34 H 0.13 1.16 6.08 -52.48 -0.32 0.84 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -33.14 336.39 -8.40 -41.54 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.67 Total: -0.43 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.76 Total: -4.61 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.17 Total: -43.15 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.27 Total: -2.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.14 -8.40 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292498968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.709 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds