Wall clock time and date at job start Tue Mar 31 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99997 * 2 1 4 4 N 1.46498 * 109.47259 * 125.00111 * 3 2 1 5 5 C 1.46496 * 119.99742 * 270.00290 * 4 3 2 6 6 C 1.50709 * 109.47033 * 269.99810 * 5 4 3 7 7 H 1.08003 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00105 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00157 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00060 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47346 * 59.99545 * 10 8 6 12 12 H 1.48498 * 109.47217 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46935 * 299.99981 * 10 8 6 14 14 C 1.34776 * 120.00223 * 89.99503 * 4 3 2 15 15 O 1.21277 * 120.00300 * 180.02562 * 14 4 3 16 16 C 1.50700 * 119.99821 * 0.02562 * 14 4 3 17 17 S 1.81404 * 109.47023 * 179.97438 * 16 14 4 18 18 C 1.76200 * 102.99864 * 179.97438 * 17 16 14 19 19 C 1.39542 * 120.87285 * 359.71968 * 18 17 16 20 20 C 1.37866 * 119.05886 * 180.29714 * 19 18 17 21 21 N 1.32014 * 120.85190 * 359.97204 * 20 19 18 22 22 C 1.32012 * 121.92014 * 0.02562 * 21 20 19 23 23 C 1.37861 * 120.85403 * 0.02562 * 22 21 20 24 24 H 1.08001 * 120.00040 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99613 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99932 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47096 * 4.99749 * 3 2 1 28 28 H 1.09007 * 109.47057 * 244.99747 * 3 2 1 29 29 H 1.09004 * 109.47462 * 29.99526 * 5 4 3 30 30 H 1.09004 * 109.47242 * 149.99829 * 5 4 3 31 31 H 0.97003 * 120.00068 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47674 * 59.99405 * 16 14 4 33 33 H 1.09006 * 109.47002 * 299.99436 * 16 14 4 34 34 H 1.08005 * 120.47247 * 0.25131 * 19 18 17 35 35 H 1.08000 * 119.57367 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.57604 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.47580 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3040 3.8370 1.6367 8 6 2.5193 4.0666 3.6085 9 7 1.9599 3.4658 4.6359 10 14 2.8737 5.8993 3.6776 11 1 2.1380 6.5873 2.5865 12 1 2.4327 6.4397 4.9886 13 1 4.3317 6.1281 3.5124 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9191 16 6 4.6972 0.3182 -0.3482 17 16 6.4241 -0.2244 -0.2288 18 6 6.7641 -0.8242 -1.8504 19 6 5.7837 -0.7996 -2.8431 20 6 6.0885 -1.2841 -4.0973 21 7 7.2884 -1.7657 -4.3639 22 6 8.2425 -1.8062 -3.4525 23 6 8.0189 -1.3424 -2.1736 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4026 -0.9314 29 1 1.4887 1.6966 2.5458 30 1 3.0990 1.3603 3.2259 31 1 1.7310 3.9745 5.4295 32 1 4.6126 1.0950 -1.1081 33 1 4.0681 -0.5286 -0.6227 34 1 4.7999 -0.4073 -2.6317 35 1 5.3358 -1.2695 -4.8717 36 1 9.2106 -2.2086 -3.7117 37 1 8.8040 -1.3781 -1.4329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292498968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:07 Heat of formation + Delta-G solvation = 6.932172 kcal Electronic energy + Delta-G solvation = -20087.463559 eV Core-core repulsion = 16956.102065 eV Total energy + Delta-G solvation = -3131.361494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83315 -40.80491 -37.33137 -35.17041 -33.74659 -33.54550 -32.44495 -31.48589 -29.02762 -26.93326 -25.04805 -24.66841 -24.21386 -21.28596 -20.28428 -19.07550 -18.66920 -18.06826 -17.53004 -17.07165 -16.82402 -16.66027 -16.34149 -15.85173 -15.64809 -15.03840 -14.73541 -14.59257 -14.42771 -14.24693 -13.98688 -13.73678 -13.31543 -13.02066 -12.89680 -12.76990 -12.59192 -12.25963 -12.21497 -11.72057 -11.66003 -11.47199 -10.87742 -10.65532 -10.40789 -10.33129 -10.17672 -9.57302 -8.72125 -8.24065 -6.38753 0.07029 0.13816 0.16818 1.21233 1.32504 1.36670 1.40691 1.47611 1.62497 2.28148 2.42085 2.80240 3.06430 3.45170 3.58072 3.84357 3.86517 3.95050 4.01785 4.10837 4.19923 4.26587 4.40702 4.53021 4.80109 4.82639 4.85162 4.95984 5.02428 5.04630 5.19604 5.46133 5.68404 5.70300 5.72948 5.91644 6.02752 6.56758 6.70839 7.00513 7.18951 7.35133 8.83145 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.003807 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.849061 B = 7354.046087 C = 8185.080868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.129 3.871 4 N -0.589 5.589 5 C 0.266 3.734 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.259 1.259 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.514 3.486 15 O -0.578 6.578 16 C -0.130 4.130 17 S -0.062 6.062 18 C -0.064 4.064 19 C -0.194 4.194 20 C 0.115 3.885 21 N -0.517 5.517 22 C 0.114 3.886 23 C -0.165 4.165 24 H 0.116 0.884 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.025 0.975 30 H -0.002 1.002 31 H 0.267 0.733 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.185 0.815 36 H 0.186 0.814 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 -9.549 -18.698 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C 0.007 3.993 4 N -0.319 5.319 5 C 0.145 3.855 6 C -0.584 4.584 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.183 1.183 12 H -0.205 1.205 13 H -0.204 1.204 14 C 0.301 3.699 15 O -0.458 6.458 16 C -0.280 4.280 17 S 0.182 5.818 18 C -0.186 4.186 19 C -0.220 4.220 20 C -0.043 4.043 21 N -0.228 5.228 22 C -0.044 4.044 23 C -0.191 4.191 24 H 0.134 0.866 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.043 0.957 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.202 0.798 36 H 0.203 0.797 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.359 -9.699 -17.797 20.732 hybrid contribution -0.941 1.195 0.590 1.632 sum 3.418 -8.503 -17.207 19.495 Atomic orbital electron populations 1.24070 0.95629 1.02913 0.97848 1.23313 0.96807 0.98181 1.02281 1.20935 0.92821 0.96650 0.88869 1.48107 1.11028 1.59240 1.13534 1.18739 0.94076 0.92703 0.80018 1.21679 1.40808 0.94365 1.01528 0.92586 1.25827 0.94611 1.03664 0.94854 1.70040 1.42659 1.38204 1.05776 0.85501 0.78493 0.79129 0.77915 1.18335 1.20466 1.20394 1.20141 0.82240 0.78287 0.89243 1.90708 1.53648 1.57967 1.43509 1.23856 0.97724 1.07067 0.99371 1.86707 1.12878 1.74517 1.07744 1.22752 0.98126 0.99679 0.98017 1.22421 1.00481 1.04555 0.94557 1.23130 0.93972 0.91737 0.95458 1.67812 1.02173 1.16517 1.36309 1.23116 0.99047 0.94164 0.88046 1.21974 0.96223 1.01461 0.99473 0.86609 0.88283 0.86602 0.90074 0.87125 0.95653 0.98408 0.92382 0.84052 0.83740 0.82762 0.79781 0.79735 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.19 -4.39 9.74 25.64 0.25 -4.14 16 3 C 0.13 3.60 5.65 85.63 0.48 4.08 16 4 N -0.59 -23.49 2.44 -830.50 -2.03 -25.52 16 5 C 0.27 13.94 5.16 85.64 0.44 14.38 16 6 C -0.55 -30.70 9.39 25.60 0.24 -30.46 16 7 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.55 5.46 84.65 0.46 1.02 16 9 N -0.93 -55.50 13.29 21.44 0.28 -55.22 16 10 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.51 20.30 7.69 87.66 0.67 20.97 16 15 O -0.58 -29.28 15.44 -3.02 -0.05 -29.33 16 16 C -0.13 -3.34 3.41 71.24 0.24 -3.10 16 17 S -0.06 -1.76 21.10 -56.49 -1.19 -2.95 16 18 C -0.06 -1.42 6.17 22.90 0.14 -1.28 16 19 C -0.19 -3.46 9.43 22.50 0.21 -3.25 16 20 C 0.11 1.94 11.17 84.58 0.94 2.88 16 21 N -0.52 -10.34 10.36 -196.19 -2.03 -12.37 16 22 C 0.11 2.01 11.17 84.58 0.94 2.95 16 23 C -0.17 -3.26 9.90 22.50 0.22 -3.03 16 24 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 25 H 0.10 2.14 7.84 -2.91 -0.02 2.11 16 26 H 0.12 2.46 7.83 -2.91 -0.02 2.43 16 27 H 0.08 2.43 7.72 -2.39 -0.02 2.42 16 28 H 0.11 2.20 6.44 -2.38 -0.02 2.18 16 29 H 0.03 1.36 8.07 -2.38 -0.02 1.34 16 30 H 0.00 -0.14 7.42 -2.39 -0.02 -0.15 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.14 2.85 7.07 -2.39 -0.02 2.83 16 33 H 0.14 2.78 7.42 -2.39 -0.02 2.76 16 34 H 0.15 2.02 6.08 -2.91 -0.02 2.00 16 35 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -75.47 336.39 4.31 -71.16 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.07 Total: 9.51 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 6.23 Total: -1.58 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.77 Total: -93.10 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.05 Total: -29.33 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -1.19 Total: -2.95 kcal Total: -75.47 4.31 -71.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292498968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.092 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds