Wall clock time and date at job start Tue Mar 31 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99692 * 2 1 4 4 H 1.48511 * 109.47134 * 270.00304 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00333 * 3 2 1 6 6 H 1.48496 * 109.47257 * 150.00578 * 3 2 1 7 7 C 1.37875 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46961 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47218 * 180.02562 * 10 9 7 12 12 N 1.31131 * 126.55222 * 90.24324 * 11 10 9 13 13 C 1.34497 * 105.61382 * 180.12463 * 12 11 10 14 14 C 1.50703 * 126.28645 * 179.90826 * 13 12 11 15 15 O 1.42898 * 109.47171 * 269.71689 * 14 13 12 16 16 C 1.35897 * 117.00481 * 180.02562 * 15 14 13 17 17 C 1.38774 * 120.03441 * 359.72088 * 16 15 14 18 18 C 1.38138 * 119.99122 * 179.74971 * 17 16 15 19 19 C 1.38257 * 120.07872 * 0.53010 * 18 17 16 20 20 C 1.38476 * 120.08328 * 359.74048 * 19 18 17 21 21 F 1.35105 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.38392 * 120.00736 * 359.97438 * 20 19 18 23 23 N 1.29940 * 107.42386 * 359.64803 * 13 12 11 24 24 O 1.21305 * 110.25415 * 0.22454 * 23 13 12 25 25 H 0.96996 * 120.00650 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46865 * 60.00493 * 9 7 2 27 27 H 1.08995 * 109.47223 * 300.00381 * 9 7 2 28 28 H 1.08996 * 109.47185 * 60.00375 * 10 9 7 29 29 H 1.09008 * 109.46955 * 300.00050 * 10 9 7 30 30 H 1.09002 * 109.47152 * 149.71473 * 14 13 12 31 31 H 1.09001 * 109.46980 * 29.71574 * 14 13 12 32 32 H 1.07996 * 120.00577 * 0.02562 * 17 16 15 33 33 H 1.07993 * 119.96226 * 180.27412 * 18 17 16 34 34 H 1.07999 * 119.95967 * 179.77480 * 19 18 17 35 35 H 1.07997 * 120.03638 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 7 1.1057 -5.6455 -1.0549 13 6 0.4734 -6.7311 -0.5748 14 6 -0.1595 -7.8284 -1.3912 15 8 -1.5266 -7.5021 -1.6492 16 6 -2.2469 -8.3943 -2.3786 17 6 -1.6479 -9.5575 -2.8414 18 6 -2.3823 -10.4663 -3.5783 19 6 -3.7110 -10.2134 -3.8650 20 6 -4.3103 -9.0511 -3.4095 21 9 -5.6087 -8.8055 -3.6911 22 6 -3.5795 -8.1410 -2.6660 23 7 0.5132 -6.6628 0.7222 24 8 1.0940 -5.6569 1.0721 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 -0.1079 -8.7673 -0.8399 31 1 0.3739 -7.9320 -2.3361 32 1 -0.6091 -9.7543 -2.6216 33 1 -1.9169 -11.3734 -3.9344 34 1 -4.2823 -10.9235 -4.4443 35 1 -4.0466 -7.2346 -2.3102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292573803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:10 Heat of formation + Delta-G solvation = 4.138397 kcal Electronic energy + Delta-G solvation = -21398.363249 eV Core-core repulsion = 17700.667432 eV Total energy + Delta-G solvation = -3697.695817 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.19215 -45.35147 -40.44950 -37.71362 -35.71346 -34.56709 -32.69339 -31.36099 -30.48493 -30.08318 -28.23238 -25.92207 -23.67652 -23.25050 -22.78501 -21.89636 -20.55394 -19.01549 -17.78650 -17.50611 -16.79889 -16.54072 -16.48454 -16.26973 -16.13026 -15.66064 -15.07586 -14.57376 -14.18464 -14.11925 -13.72077 -13.20033 -12.94740 -12.78431 -12.45788 -12.29182 -12.16348 -11.69519 -11.47959 -11.38906 -11.25519 -11.02034 -10.84406 -10.72745 -10.17747 -10.13756 -9.41027 -9.28570 -9.23012 -8.66423 -8.47327 -6.11282 -4.16595 0.77799 0.93868 1.30638 2.09743 2.97741 3.19208 3.23786 3.27700 3.34533 3.36811 3.70952 4.05826 4.08802 4.37437 4.38543 4.56862 4.65516 4.72843 4.92347 5.00725 5.04960 5.25306 5.35471 5.58611 5.72787 5.83506 5.86237 5.94439 5.95756 6.15181 6.23049 6.34424 6.55558 6.94860 7.45700 7.52204 7.83547 8.18326 8.36260 8.88649 9.48606 10.99909 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002737 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.949571 B =10226.375864 C =11211.530409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.220 3.780 12 N -0.483 5.483 13 C 0.153 3.847 14 C 0.163 3.837 15 O -0.301 6.301 16 C 0.167 3.833 17 C -0.221 4.221 18 C -0.049 4.049 19 C -0.194 4.194 20 C 0.140 3.860 21 F -0.134 7.134 22 C -0.187 4.187 23 N -0.374 5.374 24 O 0.080 5.920 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -21.102 -5.644 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.068 4.068 11 C 0.001 3.999 12 N -0.217 5.217 13 C -0.120 4.120 14 C 0.086 3.914 15 O -0.213 6.213 16 C 0.121 3.879 17 C -0.240 4.240 18 C -0.067 4.067 19 C -0.213 4.213 20 C 0.121 3.879 21 F -0.112 7.112 22 C -0.207 4.207 23 N -0.083 5.083 24 O 0.019 5.981 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.170 -21.513 -5.506 22.431 hybrid contribution 0.253 1.026 -0.049 1.058 sum -2.917 -20.486 -5.555 21.426 Atomic orbital electron populations 1.69962 1.06169 1.27050 1.49660 1.25016 0.94871 0.99479 0.94878 0.86501 0.79753 0.83002 0.78208 1.20536 1.21162 1.19689 1.21046 0.93153 0.90144 1.52182 0.91983 1.19176 0.93569 0.89790 0.98601 1.20829 0.98005 0.83391 1.04620 1.29715 0.93846 0.97029 0.79262 1.71925 1.16164 1.04547 1.29095 1.24958 1.01317 0.97213 0.88464 1.20551 0.79822 0.92484 0.98527 1.86149 1.23017 1.44419 1.67697 1.18569 0.90571 0.88311 0.90488 1.21361 1.01639 0.95661 1.05316 1.20776 0.92741 0.98365 0.94847 1.21058 0.96569 0.97833 1.05850 1.17269 0.78576 0.94671 0.97402 1.91528 1.33641 1.94380 1.91656 1.20314 0.92760 1.02564 1.05045 1.74566 1.14277 1.04287 1.15216 1.85303 1.51943 1.24496 1.36314 0.92688 0.95451 0.95723 0.88814 0.87970 0.88981 0.88357 0.84565 0.84507 0.84538 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.53 -13.89 9.11 -34.44 -0.31 -14.20 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.65 4.96 -27.88 -0.14 0.51 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 4.05 7.77 -13.06 -0.10 3.95 16 12 N -0.48 -8.97 11.55 -9.87 -0.11 -9.08 16 13 C 0.15 2.55 7.85 -156.37 -1.23 1.32 16 14 C 0.16 2.00 5.36 36.01 0.19 2.19 16 15 O -0.30 -4.28 10.12 -19.42 -0.20 -4.47 16 16 C 0.17 1.97 6.68 -39.23 -0.26 1.71 16 17 C -0.22 -1.97 9.04 -39.42 -0.36 -2.32 16 18 C -0.05 -0.37 10.04 -39.61 -0.40 -0.77 16 19 C -0.19 -1.64 10.02 -39.49 -0.40 -2.04 16 20 C 0.14 1.50 7.30 -39.44 -0.29 1.21 16 21 F -0.13 -1.51 17.27 2.25 0.04 -1.47 16 22 C -0.19 -2.21 9.97 -39.37 -0.39 -2.60 16 23 N -0.37 -6.58 12.16 30.90 0.38 -6.21 16 24 O 0.08 1.45 11.31 18.11 0.20 1.66 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.09 0.87 7.67 -51.93 -0.40 0.48 16 31 H 0.10 0.99 7.65 -51.93 -0.40 0.59 16 32 H 0.14 0.91 6.30 -52.49 -0.33 0.58 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -31.08 320.28 -6.71 -37.79 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.63 Total: -3.27 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.94 Total: -10.21 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 1.00 Total: -40.58 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: 0.01 Total: -2.82 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.08 -6.71 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292573803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.931 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds