Wall clock time and date at job start Tue Mar 31 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99692 * 2 1 4 4 H 1.48511 * 109.47134 * 270.00304 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00333 * 3 2 1 6 6 H 1.48496 * 109.47257 * 150.00578 * 3 2 1 7 7 C 1.37875 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46961 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47218 * 180.02562 * 10 9 7 12 12 N 1.31131 * 126.55222 * 90.24324 * 11 10 9 13 13 C 1.34497 * 105.61382 * 180.12463 * 12 11 10 14 14 C 1.50703 * 126.28645 * 179.90826 * 13 12 11 15 15 O 1.42898 * 109.47171 * 269.71689 * 14 13 12 16 16 C 1.35897 * 117.00481 * 180.02562 * 15 14 13 17 17 C 1.38774 * 120.03441 * 359.72088 * 16 15 14 18 18 C 1.38138 * 119.99122 * 179.74971 * 17 16 15 19 19 C 1.38257 * 120.07872 * 0.53010 * 18 17 16 20 20 C 1.38476 * 120.08328 * 359.74048 * 19 18 17 21 21 F 1.35105 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.38392 * 120.00736 * 359.97438 * 20 19 18 23 23 N 1.29940 * 107.42386 * 359.64803 * 13 12 11 24 24 O 1.21305 * 110.25415 * 0.22454 * 23 13 12 25 25 H 0.96996 * 120.00650 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46865 * 60.00493 * 9 7 2 27 27 H 1.08995 * 109.47223 * 300.00381 * 9 7 2 28 28 H 1.08996 * 109.47185 * 60.00375 * 10 9 7 29 29 H 1.09008 * 109.46955 * 300.00050 * 10 9 7 30 30 H 1.09002 * 109.47152 * 149.71473 * 14 13 12 31 31 H 1.09001 * 109.46980 * 29.71574 * 14 13 12 32 32 H 1.07996 * 120.00577 * 0.02562 * 17 16 15 33 33 H 1.07993 * 119.96226 * 180.27412 * 18 17 16 34 34 H 1.07999 * 119.95967 * 179.77480 * 19 18 17 35 35 H 1.07997 * 120.03638 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 7 1.1057 -5.6455 -1.0549 13 6 0.4734 -6.7311 -0.5748 14 6 -0.1595 -7.8284 -1.3912 15 8 -1.5266 -7.5021 -1.6492 16 6 -2.2469 -8.3943 -2.3786 17 6 -1.6479 -9.5575 -2.8414 18 6 -2.3823 -10.4663 -3.5783 19 6 -3.7110 -10.2134 -3.8650 20 6 -4.3103 -9.0511 -3.4095 21 9 -5.6087 -8.8055 -3.6911 22 6 -3.5795 -8.1410 -2.6660 23 7 0.5132 -6.6628 0.7222 24 8 1.0940 -5.6569 1.0721 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 -0.1079 -8.7673 -0.8399 31 1 0.3739 -7.9320 -2.3361 32 1 -0.6091 -9.7543 -2.6216 33 1 -1.9169 -11.3734 -3.9344 34 1 -4.2823 -10.9235 -4.4443 35 1 -4.0466 -7.2346 -2.3102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292573803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:10 Heat of formation + Delta-G solvation = -15.575004 kcal Electronic energy + Delta-G solvation = -21399.218086 eV Core-core repulsion = 17700.667432 eV Total energy + Delta-G solvation = -3698.550654 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.02394 -46.73054 -41.29492 -38.54847 -37.11701 -36.22841 -34.46285 -32.35159 -31.89269 -30.93396 -29.25933 -27.77849 -25.01065 -24.23101 -23.90419 -23.21747 -21.97556 -19.89918 -19.17020 -18.80598 -18.38572 -17.74822 -17.26087 -17.11859 -17.09178 -16.57338 -16.49143 -16.07977 -15.69632 -15.11438 -14.78303 -14.44270 -14.31290 -13.84607 -13.77225 -13.44589 -13.41634 -13.06850 -12.83196 -12.75892 -12.52681 -12.30104 -12.18071 -12.10997 -11.92698 -11.88461 -11.35023 -10.93289 -10.57101 -9.98877 -9.43912 -8.20397 -6.32741 -0.06087 0.04067 0.19913 0.80886 1.46379 1.47300 1.58388 1.72888 1.96830 2.43465 2.51510 2.61323 2.85169 3.15282 3.31430 3.60761 3.78609 3.86581 3.94782 4.04824 4.16455 4.24064 4.34777 4.42638 4.51236 4.54980 4.79824 4.93533 4.94624 5.02163 5.14838 5.27085 5.43448 5.51922 5.61897 5.77440 6.12403 6.13420 6.83658 6.96745 7.37816 8.92113 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002737 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.949571 B =10226.375864 C =11211.530409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.031 3.969 10 C -0.014 4.014 11 C 0.214 3.786 12 N -0.500 5.500 13 C 0.156 3.844 14 C 0.160 3.840 15 O -0.334 6.334 16 C 0.143 3.857 17 C -0.213 4.213 18 C -0.039 4.039 19 C -0.186 4.186 20 C 0.122 3.878 21 F -0.143 7.143 22 C -0.213 4.213 23 N -0.385 5.385 24 O 0.073 5.927 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.003 1.003 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.162 0.838 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -23.028 -6.503 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.575 4.575 8 H 0.099 0.901 9 C -0.007 4.007 10 C -0.053 4.053 11 C -0.005 4.005 12 N -0.234 5.234 13 C -0.117 4.117 14 C 0.084 3.916 15 O -0.248 6.248 16 C 0.098 3.902 17 C -0.232 4.232 18 C -0.056 4.056 19 C -0.205 4.205 20 C 0.103 3.897 21 F -0.122 7.122 22 C -0.232 4.232 23 N -0.096 5.096 24 O 0.014 5.986 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.015 0.985 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.181 0.819 33 H 0.196 0.804 34 H 0.180 0.820 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.155 -23.449 -6.355 24.323 hybrid contribution -0.437 1.517 0.178 1.588 sum -1.592 -21.933 -6.177 22.841 Atomic orbital electron populations 1.70122 1.08177 1.27943 1.51443 1.26031 0.95653 1.03730 0.94597 0.85360 0.78817 0.77963 0.78391 1.20005 1.21461 1.17767 1.21573 0.94260 0.90837 1.50788 0.90054 1.18967 0.94057 0.92126 0.95538 1.20585 0.96665 0.81271 1.06799 1.29608 0.94047 0.97226 0.79583 1.71935 1.16648 1.05387 1.29462 1.25734 1.00246 0.97296 0.88450 1.20907 0.79301 0.91831 0.99553 1.86068 1.23857 1.46055 1.68775 1.18752 0.90416 0.89393 0.91616 1.21714 1.02932 0.94298 1.04228 1.21274 0.92041 0.99107 0.93222 1.21441 0.97290 0.96898 1.04833 1.17498 0.78347 0.95642 0.98253 1.91497 1.34304 1.94582 1.91817 1.20362 0.93605 1.02773 1.06488 1.74553 1.14727 1.04366 1.15938 1.85285 1.52171 1.24794 1.36314 0.92812 0.99049 0.98478 0.86088 0.86367 0.85872 0.85898 0.81869 0.80383 0.82026 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.54 -28.24 9.11 25.60 0.23 -28.01 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.03 1.57 4.96 29.85 0.15 1.72 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.35 16 11 C 0.21 7.87 7.77 88.38 0.69 8.56 16 12 N -0.50 -18.42 11.55 -303.19 -3.50 -21.92 16 13 C 0.16 5.08 7.85 138.46 1.09 6.17 16 14 C 0.16 3.67 5.36 71.24 0.38 4.05 16 15 O -0.33 -9.51 10.12 -92.39 -0.93 -10.44 16 16 C 0.14 3.32 6.68 22.50 0.15 3.47 16 17 C -0.21 -3.18 9.04 22.37 0.20 -2.97 16 18 C -0.04 -0.43 10.04 22.25 0.22 -0.21 16 19 C -0.19 -2.68 10.02 22.33 0.22 -2.45 16 20 C 0.12 2.58 7.30 22.36 0.16 2.75 16 21 F -0.14 -3.32 17.27 44.97 0.78 -2.54 16 22 C -0.21 -5.26 9.97 22.41 0.22 -5.03 16 23 N -0.39 -13.44 12.16 -60.32 -0.73 -14.17 16 24 O 0.07 2.63 11.31 74.86 0.85 3.47 16 25 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 29 H 0.12 3.93 8.14 -2.38 -0.02 3.91 16 30 H 0.12 1.99 7.67 -2.39 -0.02 1.97 16 31 H 0.12 2.15 7.65 -2.39 -0.02 2.13 16 32 H 0.16 1.47 6.30 -2.91 -0.02 1.45 16 33 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -70.08 320.28 4.25 -65.83 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.12 Total: 3.41 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 4.36 Total: -11.98 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.95 Total: -92.18 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.09 Total: -6.97 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -70.08 4.25 -65.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292573803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.260 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds