Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48493 * 109.47296 * 270.00312 * 3 2 1 5 5 H 1.48503 * 109.46930 * 29.99853 * 3 2 1 6 6 H 1.48502 * 109.47013 * 149.99696 * 3 2 1 7 7 C 1.37875 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99932 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46860 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46860 * 179.97438 * 10 9 7 12 12 N 1.31132 * 126.55231 * 89.97654 * 11 10 9 13 13 C 1.34484 * 105.61843 * 180.02562 * 12 11 10 14 14 C 1.50700 * 126.28894 * 180.26504 * 13 12 11 15 15 O 1.42896 * 109.47277 * 269.70660 * 14 13 12 16 16 C 1.35952 * 117.00222 * 180.02562 * 15 14 13 17 17 C 1.38706 * 120.02613 * 359.72174 * 16 15 14 18 18 C 1.38147 * 119.96337 * 179.78853 * 17 16 15 19 19 C 1.38451 * 120.03354 * 0.49255 * 18 17 16 20 20 F 1.35102 * 119.97084 * 179.71660 * 19 18 17 21 21 C 1.38456 * 120.05902 * 359.74004 * 19 18 17 22 22 C 1.38147 * 120.02892 * 0.02682 * 21 19 18 23 23 N 1.29954 * 107.42396 * 359.97438 * 13 12 11 24 24 O 1.21294 * 110.24985 * 0.02562 * 23 13 12 25 25 H 0.96998 * 119.99819 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47064 * 60.00444 * 9 7 2 27 27 H 1.08997 * 109.47091 * 299.99830 * 9 7 2 28 28 H 1.08994 * 109.47219 * 60.00172 * 10 9 7 29 29 H 1.09000 * 109.46572 * 300.00063 * 10 9 7 30 30 H 1.08999 * 109.47253 * 29.70826 * 14 13 12 31 31 H 1.09011 * 109.46848 * 149.70700 * 14 13 12 32 32 H 1.07997 * 120.01767 * 0.02562 * 17 16 15 33 33 H 1.08009 * 119.98228 * 180.21000 * 18 17 16 34 34 H 1.08001 * 119.98318 * 179.97438 * 21 19 18 35 35 H 1.08002 * 120.01344 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9671 0.0001 12 7 1.1007 -5.6436 -1.0530 13 6 0.4725 -6.7310 -0.5719 14 6 -0.1569 -7.8311 -1.3873 15 8 -1.5253 -7.5099 -1.6446 16 6 -2.2430 -8.4056 -2.3733 17 6 -1.6402 -9.5662 -2.8354 18 6 -2.3719 -10.4775 -3.5720 19 6 -3.7035 -10.2280 -3.8576 20 9 -4.4163 -11.1174 -4.5830 21 6 -4.3051 -9.0676 -3.4010 22 6 -3.5771 -8.1568 -2.6601 23 7 0.5134 -6.6621 0.7251 24 8 1.0946 -5.6562 1.0740 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8721 -3.6042 -0.8905 30 1 0.3762 -7.9334 -2.3324 31 1 -0.1015 -8.7695 -0.8354 32 1 -0.6005 -9.7591 -2.6163 33 1 -1.9038 -11.3829 -3.9292 34 1 -5.3438 -8.8740 -3.6249 35 1 -4.0465 -7.2516 -2.3044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292625343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = 3.940009 kcal Electronic energy + Delta-G solvation = -21336.204968 eV Core-core repulsion = 17638.500548 eV Total energy + Delta-G solvation = -3697.704420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.09149 -45.35012 -40.43582 -37.68125 -35.70479 -34.56104 -32.68342 -31.63921 -30.55638 -29.85209 -28.08640 -25.92486 -23.84642 -23.24500 -22.63709 -21.94121 -20.56679 -18.81701 -17.86084 -17.62524 -17.40052 -16.75338 -16.50529 -16.07003 -15.67079 -15.08890 -15.04087 -14.57705 -14.16159 -14.01061 -13.66537 -13.38233 -13.18902 -12.80791 -12.56447 -12.45231 -12.15345 -11.70186 -11.43021 -11.27093 -11.13781 -11.02411 -10.83926 -10.72641 -10.18138 -10.13828 -9.54700 -9.41231 -9.28802 -8.47789 -8.43551 -6.11912 -4.17121 0.80142 0.88238 1.31576 2.12656 3.02721 3.20802 3.23097 3.27275 3.34128 3.36430 3.77101 4.00018 4.08468 4.32407 4.37482 4.41432 4.63851 4.80403 4.92923 4.98073 5.23914 5.24720 5.35725 5.52096 5.75043 5.82169 5.83053 5.87422 5.95886 6.15037 6.23237 6.34246 6.55269 6.97702 7.45198 7.51740 7.83064 8.17834 8.36596 8.88134 9.48081 10.99283 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.002567 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.987741 B =10905.408453 C =11687.160147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.220 3.780 12 N -0.484 5.484 13 C 0.154 3.846 14 C 0.162 3.838 15 O -0.302 6.302 16 C 0.129 3.871 17 C -0.183 4.183 18 C -0.111 4.111 19 C 0.056 3.944 20 F -0.142 7.142 21 C -0.111 4.111 22 C -0.120 4.120 23 N -0.375 5.375 24 O 0.080 5.920 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -19.857 -5.147 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.069 4.069 11 C 0.001 3.999 12 N -0.217 5.217 13 C -0.119 4.119 14 C 0.085 3.915 15 O -0.214 6.214 16 C 0.083 3.917 17 C -0.201 4.201 18 C -0.130 4.130 19 C 0.037 3.963 20 F -0.121 7.121 21 C -0.130 4.130 22 C -0.138 4.138 23 N -0.084 5.084 24 O 0.019 5.981 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.805 -20.315 -5.027 21.271 hybrid contribution 0.405 0.768 -0.145 0.880 sum -3.400 -19.547 -5.172 20.504 Atomic orbital electron populations 1.69970 1.06164 1.27033 1.49704 1.25019 0.94878 0.99479 0.94880 0.86500 0.79755 0.82994 0.78209 1.20536 1.21164 1.19689 1.21049 0.93158 0.90147 1.52139 0.91982 1.19177 0.93570 0.89787 0.98598 1.20826 0.98009 0.83400 1.04616 1.29715 0.93871 0.97041 0.79260 1.71919 1.16150 1.04548 1.29117 1.24965 1.01341 0.97135 0.88447 1.20537 0.80082 0.92431 0.98445 1.86171 1.22821 1.44398 1.68014 1.19008 0.91670 0.88807 0.92244 1.21144 1.01213 0.94758 1.03026 1.20919 0.92484 1.00457 0.99136 1.17581 0.90570 0.89772 0.98424 1.91491 1.78111 1.67027 1.75484 1.20975 1.01026 0.92664 0.98302 1.20356 0.91352 1.01202 1.00907 1.74569 1.14335 1.04249 1.15247 1.85300 1.51902 1.24554 1.36312 0.92699 0.95440 0.95726 0.88830 0.87972 0.88489 0.89112 0.84281 0.84354 0.83891 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -13.82 9.11 -34.44 -0.31 -14.14 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.65 4.96 -27.88 -0.14 0.51 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 4.02 7.77 -13.06 -0.10 3.92 16 12 N -0.48 -8.92 11.55 -9.87 -0.11 -9.04 16 13 C 0.15 2.54 7.85 -156.38 -1.23 1.31 16 14 C 0.16 1.97 5.36 36.01 0.19 2.17 16 15 O -0.30 -4.18 10.12 -19.59 -0.20 -4.38 16 16 C 0.13 1.46 6.69 -39.24 -0.26 1.20 16 17 C -0.18 -1.67 9.04 -39.44 -0.36 -2.02 16 18 C -0.11 -0.96 10.02 -39.54 -0.40 -1.36 16 19 C 0.06 0.54 7.30 -39.42 -0.29 0.25 16 20 F -0.14 -1.46 17.27 2.25 0.04 -1.43 16 21 C -0.11 -1.02 10.02 -39.53 -0.40 -1.41 16 22 C -0.12 -1.24 9.98 -39.44 -0.39 -1.64 16 23 N -0.37 -6.56 12.16 30.90 0.38 -6.18 16 24 O 0.08 1.44 11.31 18.10 0.20 1.65 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.10 0.98 7.65 -51.93 -0.40 0.58 16 31 H 0.09 0.86 7.67 -51.92 -0.40 0.46 16 32 H 0.14 0.96 6.30 -52.49 -0.33 0.62 16 33 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -30.88 320.28 -6.72 -37.60 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -3.63 Total: -3.15 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.94 Total: -10.37 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 1.00 Total: -40.39 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: 0.01 Total: -2.73 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.88 -6.72 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292625343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.540 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds