Wall clock time and date at job start Tue Mar 31 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48503 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47524 * 300.00167 * 3 2 1 6 6 H 1.48504 * 109.47223 * 60.00010 * 3 2 1 7 7 C 1.37870 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47010 * 179.97438 * 10 9 7 12 12 N 1.31137 * 126.54832 * 90.25836 * 11 10 9 13 13 C 1.34491 * 105.61531 * 180.11956 * 12 11 10 14 14 C 1.50698 * 126.28801 * 179.90005 * 13 12 11 15 15 O 1.42900 * 109.47206 * 269.71413 * 14 13 12 16 16 C 1.35954 * 116.99954 * 179.97438 * 15 14 13 17 17 C 1.38656 * 120.06355 * 0.02562 * 16 15 14 18 18 C 1.38188 * 119.96813 * 179.74251 * 17 16 15 19 19 C 1.38252 * 120.09757 * 0.25608 * 18 17 16 20 20 C 1.38258 * 120.12733 * 0.02562 * 19 18 17 21 21 C 1.38337 * 120.02848 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.04689 * 179.97438 * 21 20 19 23 23 N 1.29948 * 107.42466 * 359.63871 * 13 12 11 24 24 O 1.21300 * 110.25114 * 0.22957 * 23 13 12 25 25 H 0.97003 * 119.99873 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47280 * 59.99768 * 9 7 2 27 27 H 1.09004 * 109.47328 * 300.00197 * 9 7 2 28 28 H 1.08996 * 109.47168 * 60.00603 * 10 9 7 29 29 H 1.08998 * 109.47723 * 299.99987 * 10 9 7 30 30 H 1.09002 * 109.46905 * 149.71432 * 14 13 12 31 31 H 1.08997 * 109.47342 * 29.71500 * 14 13 12 32 32 H 1.08002 * 120.01753 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.94824 * 180.23139 * 18 17 16 34 34 H 1.07999 * 119.94080 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.98818 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4918 -4.9671 -0.0012 12 7 1.1043 -5.6456 -1.0544 13 6 0.4725 -6.7311 -0.5733 14 6 -0.1615 -7.8285 -1.3887 15 8 -1.5289 -7.5022 -1.6449 16 6 -2.2501 -8.3944 -2.3744 17 6 -1.6543 -9.5593 -2.8333 18 6 -2.3907 -10.4673 -3.5700 19 6 -3.7195 -10.2136 -3.8550 20 6 -4.3160 -9.0506 -3.4044 21 6 -3.5838 -8.1380 -2.6664 22 9 -4.1662 -7.0011 -2.2264 23 7 0.5142 -6.6627 0.7237 24 8 1.0954 -5.6569 1.0726 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 -0.1091 -8.7673 -0.8373 31 1 0.3706 -7.9323 -2.3343 32 1 -0.6165 -9.7591 -2.6111 33 1 -1.9272 -11.3764 -3.9241 34 1 -4.2925 -10.9248 -4.4314 35 1 -5.3541 -8.8545 -3.6287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292788256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:38 Heat of formation + Delta-G solvation = 6.027290 kcal Electronic energy + Delta-G solvation = -21671.829922 eV Core-core repulsion = 17974.216014 eV Total energy + Delta-G solvation = -3697.613908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.89492 -45.32341 -40.32141 -37.86211 -35.69479 -34.54425 -32.66185 -31.04063 -30.71064 -30.11223 -28.16720 -25.89975 -23.76582 -23.05296 -22.76185 -21.92740 -20.52803 -18.88063 -17.77861 -17.54348 -17.13625 -16.75394 -16.52397 -16.22281 -15.32905 -15.26592 -14.92492 -14.66869 -14.54551 -14.09815 -13.50145 -13.13433 -12.91168 -12.71700 -12.44391 -12.16381 -12.00932 -11.75999 -11.56314 -11.47508 -11.20559 -11.02178 -10.81016 -10.69294 -10.16058 -10.11428 -9.38185 -9.28517 -9.25021 -8.51177 -8.45691 -6.09213 -4.14530 0.79264 0.92661 1.33519 2.12737 3.02455 3.22327 3.24851 3.28217 3.36065 3.39141 3.74105 4.00056 4.10291 4.39398 4.40762 4.47791 4.66091 4.87772 4.90103 4.94502 5.17203 5.27286 5.37904 5.61773 5.70519 5.83025 5.86642 5.98229 6.02600 6.17452 6.25512 6.30450 6.57934 6.95123 7.48398 7.54835 7.85768 8.20434 8.39152 8.90973 9.50605 11.01982 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002945 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.521459 B = 9504.325490 C =10360.315365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.029 4.029 11 C 0.220 3.780 12 N -0.483 5.483 13 C 0.154 3.846 14 C 0.162 3.838 15 O -0.298 6.298 16 C 0.103 3.897 17 C -0.184 4.184 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.116 4.116 21 C 0.073 3.927 22 F -0.128 7.128 23 N -0.374 5.374 24 O 0.081 5.919 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 -21.972 -6.372 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.068 4.068 11 C 0.001 3.999 12 N -0.217 5.217 13 C -0.119 4.119 14 C 0.086 3.914 15 O -0.210 6.210 16 C 0.056 3.944 17 C -0.203 4.203 18 C -0.108 4.108 19 C -0.149 4.149 20 C -0.135 4.135 21 C 0.053 3.947 22 F -0.107 7.107 23 N -0.083 5.083 24 O 0.020 5.980 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.945 -22.349 -6.208 23.529 hybrid contribution 0.392 1.168 0.088 1.235 sum -3.553 -21.181 -6.120 22.332 Atomic orbital electron populations 1.69987 1.06158 1.26910 1.49741 1.25025 0.94874 0.99489 0.94914 0.86447 0.80009 0.83349 0.77663 1.19562 1.20931 1.20926 1.21082 0.93173 0.90130 1.52040 0.91936 1.19185 0.93582 0.89806 0.98638 1.20823 0.97987 0.83387 1.04598 1.29720 0.93871 0.97050 0.79255 1.71919 1.16138 1.04527 1.29120 1.24937 1.01292 0.97211 0.88452 1.20546 0.79858 0.92508 0.98493 1.86213 1.22942 1.44086 1.67791 1.19030 0.90527 0.90387 0.94415 1.21208 1.01395 0.94341 1.03335 1.21015 0.94042 0.98869 0.96839 1.20941 0.95259 0.97119 1.01597 1.21061 1.00709 0.93764 0.97974 1.17070 0.89112 0.86009 1.02540 1.91550 1.83785 1.47646 1.87709 1.74564 1.14235 1.04305 1.15223 1.85298 1.51939 1.24497 1.36305 0.92753 0.95434 0.95708 0.88832 0.87971 0.89051 0.88424 0.84323 0.84905 0.84777 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.65 4.95 -27.89 -0.14 0.51 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.22 4.17 7.77 -13.05 -0.10 4.06 16 12 N -0.48 -9.29 11.55 -9.87 -0.11 -9.40 16 13 C 0.15 2.67 7.85 -156.38 -1.23 1.45 16 14 C 0.16 2.13 5.36 36.00 0.19 2.33 16 15 O -0.30 -4.67 9.99 -19.59 -0.20 -4.86 16 16 C 0.10 1.32 6.69 -39.18 -0.26 1.06 16 17 C -0.18 -1.70 9.04 -39.45 -0.36 -2.05 16 18 C -0.09 -0.65 10.04 -39.59 -0.40 -1.05 16 19 C -0.13 -0.95 10.04 -39.57 -0.40 -1.35 16 20 C -0.12 -1.08 10.02 -39.54 -0.40 -1.48 16 21 C 0.07 0.94 7.31 -39.29 -0.29 0.65 16 22 F -0.13 -2.01 17.11 2.25 0.04 -1.97 16 23 N -0.37 -6.84 12.16 30.90 0.38 -6.46 16 24 O 0.08 1.50 11.31 18.10 0.20 1.71 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 29 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 31 H 0.10 1.05 7.66 -51.93 -0.40 0.65 16 32 H 0.14 0.96 6.30 -52.49 -0.33 0.63 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -32.62 320.10 -6.72 -39.34 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -3.63 Total: -4.10 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.94 Total: -9.40 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.00 Total: -41.49 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.01 Total: -3.15 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.62 -6.72 -39.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds