Wall clock time and date at job start Tue Mar 31 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48503 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47524 * 300.00167 * 3 2 1 6 6 H 1.48504 * 109.47223 * 60.00010 * 3 2 1 7 7 C 1.37870 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47010 * 179.97438 * 10 9 7 12 12 N 1.31137 * 126.54832 * 90.25836 * 11 10 9 13 13 C 1.34491 * 105.61531 * 180.11956 * 12 11 10 14 14 C 1.50698 * 126.28801 * 179.90005 * 13 12 11 15 15 O 1.42900 * 109.47206 * 269.71413 * 14 13 12 16 16 C 1.35954 * 116.99954 * 179.97438 * 15 14 13 17 17 C 1.38656 * 120.06355 * 0.02562 * 16 15 14 18 18 C 1.38188 * 119.96813 * 179.74251 * 17 16 15 19 19 C 1.38252 * 120.09757 * 0.25608 * 18 17 16 20 20 C 1.38258 * 120.12733 * 0.02562 * 19 18 17 21 21 C 1.38337 * 120.02848 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.04689 * 179.97438 * 21 20 19 23 23 N 1.29948 * 107.42466 * 359.63871 * 13 12 11 24 24 O 1.21300 * 110.25114 * 0.22957 * 23 13 12 25 25 H 0.97003 * 119.99873 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47280 * 59.99768 * 9 7 2 27 27 H 1.09004 * 109.47328 * 300.00197 * 9 7 2 28 28 H 1.08996 * 109.47168 * 60.00603 * 10 9 7 29 29 H 1.08998 * 109.47723 * 299.99987 * 10 9 7 30 30 H 1.09002 * 109.46905 * 149.71432 * 14 13 12 31 31 H 1.08997 * 109.47342 * 29.71500 * 14 13 12 32 32 H 1.08002 * 120.01753 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.94824 * 180.23139 * 18 17 16 34 34 H 1.07999 * 119.94080 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.98818 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4918 -4.9671 -0.0012 12 7 1.1043 -5.6456 -1.0544 13 6 0.4725 -6.7311 -0.5733 14 6 -0.1615 -7.8285 -1.3887 15 8 -1.5289 -7.5022 -1.6449 16 6 -2.2501 -8.3944 -2.3744 17 6 -1.6543 -9.5593 -2.8333 18 6 -2.3907 -10.4673 -3.5700 19 6 -3.7195 -10.2136 -3.8550 20 6 -4.3160 -9.0506 -3.4044 21 6 -3.5838 -8.1380 -2.6664 22 9 -4.1662 -7.0011 -2.2264 23 7 0.5142 -6.6627 0.7237 24 8 1.0954 -5.6569 1.0726 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 -0.1091 -8.7673 -0.8373 31 1 0.3706 -7.9323 -2.3343 32 1 -0.6165 -9.7591 -2.6111 33 1 -1.9272 -11.3764 -3.9241 34 1 -4.2925 -10.9248 -4.4314 35 1 -5.3541 -8.8545 -3.6287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292788256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:37 Heat of formation + Delta-G solvation = -15.560479 kcal Electronic energy + Delta-G solvation = -21672.766038 eV Core-core repulsion = 17974.216014 eV Total energy + Delta-G solvation = -3698.550024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.91775 -46.76179 -41.19200 -38.68904 -37.15559 -36.25325 -34.47917 -32.24540 -31.73021 -31.17562 -29.21200 -27.79629 -25.07379 -24.33029 -23.56551 -23.37736 -22.00865 -19.82641 -19.15334 -18.88007 -18.39481 -18.09496 -17.72588 -17.32876 -16.51360 -16.36488 -16.14383 -15.88909 -15.67874 -15.42239 -15.01945 -14.36431 -14.11918 -13.87491 -13.75348 -13.43725 -13.41442 -12.96212 -12.86016 -12.71086 -12.55960 -12.37898 -12.19963 -12.17058 -11.95919 -11.88183 -11.33910 -10.95329 -10.59201 -9.99340 -9.33636 -8.21224 -6.33920 -0.08755 0.08286 0.19835 0.78316 1.45468 1.45721 1.59204 1.70699 1.97517 2.42739 2.56232 2.60515 2.82187 3.14377 3.20162 3.60378 3.74358 3.84114 3.95004 4.11949 4.24292 4.30342 4.40079 4.46793 4.49319 4.52135 4.77300 4.91705 4.92876 5.05128 5.22721 5.38484 5.42060 5.49914 5.61737 5.76452 6.11037 6.11828 6.82742 6.93984 7.36778 8.91599 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002945 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.521459 B = 9504.325490 C =10360.315365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.031 3.969 10 C -0.014 4.014 11 C 0.214 3.786 12 N -0.500 5.500 13 C 0.155 3.845 14 C 0.160 3.840 15 O -0.339 6.339 16 C 0.072 3.928 17 C -0.182 4.182 18 C -0.079 4.079 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.025 3.975 22 F -0.159 7.159 23 N -0.385 5.385 24 O 0.074 5.926 25 H 0.263 0.737 26 H -0.010 1.010 27 H -0.004 1.004 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 -24.173 -7.572 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.174 1.174 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.100 0.900 9 C -0.008 4.008 10 C -0.052 4.052 11 C -0.005 4.005 12 N -0.235 5.235 13 C -0.118 4.118 14 C 0.085 3.915 15 O -0.252 6.252 16 C 0.027 3.973 17 C -0.200 4.200 18 C -0.097 4.097 19 C -0.138 4.138 20 C -0.135 4.135 21 C 0.006 3.994 22 F -0.138 7.138 23 N -0.096 5.096 24 O 0.015 5.985 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.015 0.985 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.189 0.811 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.387 -24.567 -7.400 25.768 hybrid contribution -0.171 1.690 0.388 1.743 sum -2.558 -22.877 -7.012 24.064 Atomic orbital electron populations 1.70147 1.08238 1.27897 1.51488 1.26063 0.95667 1.03838 0.94579 0.85284 0.79471 0.78205 0.77382 1.17444 1.20972 1.20758 1.21596 0.94274 0.90753 1.50705 0.89960 1.18978 0.94071 0.92245 0.95471 1.20594 0.96634 0.81149 1.06868 1.29649 0.94036 0.97266 0.79536 1.71927 1.16644 1.05361 1.29543 1.25718 1.00279 0.97342 0.88471 1.20886 0.79293 0.91864 0.99493 1.86118 1.23921 1.46071 1.69110 1.19368 0.90527 0.91623 0.95820 1.21556 1.02625 0.93083 1.02742 1.21546 0.93889 0.99337 0.94890 1.21449 0.95641 0.96399 1.00296 1.21376 1.01397 0.93731 0.97010 1.17722 0.90144 0.86430 1.05120 1.91457 1.84327 1.49496 1.88474 1.74547 1.14689 1.04426 1.15911 1.85277 1.52137 1.24766 1.36294 0.92809 0.99192 0.98545 0.85968 0.86303 0.85982 0.86015 0.81997 0.80977 0.81059 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.54 -28.64 9.11 25.60 0.23 -28.40 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.03 1.57 4.95 29.85 0.15 1.72 16 10 C -0.01 -0.52 5.78 29.85 0.17 -0.34 16 11 C 0.21 8.20 7.77 88.38 0.69 8.88 16 12 N -0.50 -19.40 11.55 -303.18 -3.50 -22.90 16 13 C 0.16 5.40 7.85 138.46 1.09 6.48 16 14 C 0.16 4.09 5.36 71.24 0.38 4.47 16 15 O -0.34 -10.90 9.99 -93.03 -0.93 -11.83 16 16 C 0.07 1.86 6.69 22.53 0.15 2.01 16 17 C -0.18 -2.91 9.04 22.36 0.20 -2.71 16 18 C -0.08 -0.83 10.04 22.26 0.22 -0.61 16 19 C -0.12 -1.33 10.04 22.28 0.22 -1.10 16 20 C -0.12 -2.04 10.02 22.30 0.22 -1.82 16 21 C 0.03 0.68 7.31 22.46 0.16 0.85 16 22 F -0.16 -5.41 17.11 44.97 0.77 -4.64 16 23 N -0.39 -14.19 12.16 -60.32 -0.73 -14.92 16 24 O 0.07 2.79 11.31 74.85 0.85 3.63 16 25 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 29 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 30 H 0.12 2.25 7.66 -2.39 -0.02 2.23 16 31 H 0.12 2.41 7.66 -2.39 -0.02 2.39 16 32 H 0.16 1.70 6.30 -2.91 -0.02 1.68 16 33 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 35 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -75.21 320.10 4.25 -70.96 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: 1.12 Total: 2.05 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 4.36 Total: -10.33 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -3.95 Total: -94.85 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.08 Total: -8.20 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.77 Total: -4.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.21 4.25 -70.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.400 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds