Wall clock time and date at job start Tue Mar 31 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00282 * 2 1 4 4 N 1.46502 * 109.47192 * 124.99804 * 3 2 1 5 5 C 1.46496 * 119.99769 * 270.00069 * 4 3 2 6 6 C 1.50706 * 109.47125 * 270.00040 * 5 4 3 7 7 H 1.08006 * 119.99901 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00174 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99661 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99920 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47203 * 90.00170 * 10 8 6 12 12 H 1.48507 * 109.47060 * 209.99511 * 10 8 6 13 13 H 1.48494 * 109.47447 * 329.99709 * 10 8 6 14 14 C 1.34774 * 119.99985 * 90.00203 * 4 3 2 15 15 O 1.21778 * 120.00151 * 179.97438 * 14 4 3 16 16 C 1.41547 * 119.99816 * 359.97438 * 14 4 3 17 17 C 1.35558 * 119.99889 * 180.02562 * 16 14 4 18 18 C 1.41727 * 120.00256 * 179.97438 * 17 16 14 19 19 C 1.37071 * 126.19359 * 180.02562 * 18 17 16 20 20 N 1.30952 * 113.84749 * 179.97438 * 19 18 17 21 21 C 1.29356 * 117.49588 * 359.97438 * 20 19 18 22 22 C 1.50703 * 124.67720 * 180.26837 * 21 20 19 23 23 S 1.70918 * 110.64872 * 0.02562 * 21 20 19 24 24 H 1.07995 * 120.00351 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99758 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00139 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46982 * 4.99820 * 3 2 1 28 28 H 1.08997 * 109.47126 * 245.00096 * 3 2 1 29 29 H 1.09000 * 109.47812 * 29.99682 * 5 4 3 30 30 H 1.09000 * 109.47192 * 150.00104 * 5 4 3 31 31 H 0.96998 * 119.99848 * 179.97438 * 9 8 6 32 32 H 1.07995 * 120.00568 * 359.97438 * 16 14 4 33 33 H 1.08007 * 120.00006 * 0.02562 * 17 16 14 34 34 H 1.07997 * 123.07409 * 359.95433 * 19 18 17 35 35 H 1.08997 * 109.46882 * 269.70029 * 22 21 20 36 36 H 1.09000 * 109.46627 * 29.70207 * 22 21 20 37 37 H 1.08996 * 109.47174 * 149.70016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8649 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5193 4.0667 3.6085 9 7 1.9598 3.4659 4.6360 10 14 2.8738 5.8994 3.6775 11 1 1.7012 6.6502 3.1612 12 1 3.1381 6.2999 5.0829 13 1 4.0637 6.2052 2.8435 14 6 4.2497 0.8661 0.9825 15 8 5.0231 0.8888 1.9228 16 6 4.6697 0.3506 -0.2671 17 6 5.9327 -0.1183 -0.4168 18 6 6.3532 -0.6350 -1.6678 19 6 7.5939 -1.1396 -1.9594 20 7 7.7200 -1.5534 -3.1954 21 6 6.6907 -1.4411 -3.9708 22 6 6.6544 -1.8695 -5.4152 23 16 5.3753 -0.7461 -3.1294 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4887 1.6968 2.5459 30 1 3.0989 1.3603 3.2260 31 1 1.7316 3.9744 5.4298 32 1 3.9838 0.3301 -1.1010 33 1 6.6184 -0.0990 0.4174 34 1 8.3942 -1.1908 -1.2361 35 1 6.9575 -1.0361 -6.0490 36 1 7.3376 -2.7059 -5.5633 37 1 5.6421 -2.1763 -5.6779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293759707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:48 Heat of formation + Delta-G solvation = 26.594823 kcal Electronic energy + Delta-G solvation = -20015.749335 eV Core-core repulsion = 16885.240478 eV Total energy + Delta-G solvation = -3130.508857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04871 -40.62869 -37.33980 -35.79971 -35.04549 -33.68781 -32.46393 -30.22506 -28.72337 -26.95521 -25.80800 -24.81587 -22.98427 -21.10874 -20.69344 -19.89396 -18.66415 -18.59515 -18.20214 -17.17395 -16.30467 -16.21031 -16.16722 -15.94621 -15.51622 -14.99000 -14.60715 -14.38217 -14.31264 -14.15210 -13.61711 -13.49156 -13.26237 -13.06870 -13.01141 -12.86563 -12.57654 -12.28191 -12.25857 -12.22132 -11.80505 -11.67460 -10.92313 -10.64681 -10.61095 -10.32473 -10.15257 -9.57934 -9.16756 -8.22359 -6.37668 -1.07329 0.23254 0.64542 0.66323 1.32285 1.36439 1.39357 1.50018 1.80813 2.32221 2.51465 2.55611 3.06775 3.18295 3.70851 3.92148 4.02416 4.06212 4.15112 4.21716 4.35702 4.45560 4.63541 4.68734 4.81688 4.90253 4.99205 5.04743 5.09557 5.15973 5.22596 5.28906 5.51951 5.70517 5.76158 5.94819 6.05716 6.63275 6.68055 6.74930 7.26379 7.43203 8.84650 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.003642 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.326320 B = 7686.037597 C = 8403.273700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.186 4.186 3 C 0.131 3.869 4 N -0.594 5.594 5 C 0.264 3.736 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.273 1.273 14 C 0.532 3.468 15 O -0.603 6.603 16 C -0.218 4.218 17 C 0.029 3.971 18 C -0.248 4.248 19 C 0.082 3.918 20 N -0.505 5.505 21 C 0.045 3.955 22 C -0.083 4.083 23 S 0.190 5.810 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.023 0.977 30 H -0.003 1.003 31 H 0.267 0.733 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.197 0.803 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.308 -10.691 -22.535 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.009 3.991 4 N -0.323 5.323 5 C 0.143 3.857 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.325 3.675 15 O -0.488 6.488 16 C -0.241 4.241 17 C 0.006 3.994 18 C -0.369 4.369 19 C -0.075 4.075 20 N -0.220 5.220 21 C -0.228 4.228 22 C -0.142 4.142 23 S 0.448 5.552 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.041 0.959 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.214 0.786 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.013 -10.613 -22.465 25.028 hybrid contribution 0.829 0.897 1.614 2.024 sum 3.842 -9.716 -20.851 23.322 Atomic orbital electron populations 1.24058 0.95362 1.02996 0.97911 1.23312 0.96878 0.98065 1.02242 1.20870 0.92580 0.96590 0.89017 1.48142 1.11646 1.59216 1.13260 1.18706 0.93898 0.92780 0.80322 1.21702 1.40711 0.94340 1.01478 0.92887 1.25868 0.94605 1.03854 0.94772 1.70058 1.42782 1.38144 1.05773 0.85399 0.78885 0.78949 0.77476 1.18671 1.20567 1.19816 1.17539 0.82002 0.78599 0.89377 1.90763 1.53947 1.59666 1.44414 1.22103 0.98269 1.06420 0.97316 1.20531 0.95289 0.89655 0.93897 1.23862 0.99570 1.14237 0.99219 1.22944 0.96113 0.95467 0.92946 1.66130 1.30308 1.21145 1.04406 1.28049 0.91715 0.99950 1.03124 1.20727 1.05620 1.03709 0.84190 1.83812 1.15639 1.54955 1.00795 0.86390 0.88145 0.87055 0.90149 0.87935 0.95942 0.98472 0.92366 0.83437 0.84411 0.78608 0.87777 0.88600 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 14.32 67.78 0.97 -3.02 16 2 C -0.19 -5.16 9.85 25.65 0.25 -4.90 16 3 C 0.13 4.31 5.53 85.63 0.47 4.78 16 4 N -0.59 -26.52 2.44 -841.18 -2.05 -28.57 16 5 C 0.26 14.74 5.16 85.64 0.44 15.19 16 6 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.47 5.46 84.66 0.46 0.93 16 9 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 10 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.53 23.60 7.44 85.06 0.63 24.23 16 15 O -0.60 -32.64 15.69 -4.60 -0.07 -32.71 16 16 C -0.22 -7.01 8.58 22.47 0.19 -6.82 16 17 C 0.03 0.82 9.39 22.51 0.21 1.03 16 18 C -0.25 -5.76 6.26 22.86 0.14 -5.61 16 19 C 0.08 1.78 11.38 84.55 0.96 2.75 16 20 N -0.51 -10.85 10.50 -189.29 -1.99 -12.84 16 21 C 0.04 0.75 7.37 88.47 0.65 1.40 16 22 C -0.08 -0.69 10.46 71.24 0.74 0.06 16 23 S 0.19 3.32 21.93 -56.49 -1.24 2.08 16 24 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 25 H 0.10 2.40 7.84 -2.91 -0.02 2.37 16 26 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.08 2.74 7.72 -2.38 -0.02 2.72 16 28 H 0.10 2.71 6.08 -2.39 -0.01 2.70 16 29 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 30 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 32 H 0.15 3.80 5.13 -2.91 -0.01 3.78 16 33 H 0.14 4.25 7.46 -2.91 -0.02 4.22 16 34 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -77.53 339.72 4.41 -73.11 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.07 Total: 9.90 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 6.38 Total: -1.85 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -3.75 Total: -98.08 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.07 Total: -32.71 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.24 Total: 2.08 kcal Total: -77.53 4.41 -73.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293759707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.709 kcal (2) G-P(sol) polarization free energy of solvation -77.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds