Wall clock time and date at job start Tue Mar 31 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47286 * 2 1 4 4 C 1.50703 * 109.47455 * 179.97438 * 3 2 1 5 5 C 1.37444 * 122.44622 * 265.32027 * 4 3 2 6 6 C 1.36774 * 113.27882 * 180.19580 * 5 4 3 7 7 C 1.46457 * 125.46469 * 179.79764 * 6 5 4 8 8 O 1.21746 * 119.99499 * 354.32172 * 7 6 5 9 9 N 1.34769 * 119.99959 * 174.32382 * 7 6 5 10 10 C 1.36887 * 119.99963 * 173.89223 * 9 7 6 11 11 H 1.08004 * 119.99924 * 11.95947 * 10 9 7 12 12 C 1.39001 * 120.00328 * 192.22788 * 10 9 7 13 13 N 1.31404 * 119.99581 * 16.68829 * 12 10 9 14 14 Si 1.86798 * 120.00222 * 196.68566 * 12 10 9 15 15 H 1.48505 * 109.46962 * 60.00305 * 14 12 10 16 16 H 1.48502 * 109.47040 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47311 * 300.00100 * 14 12 10 18 18 C 1.46504 * 120.00134 * 353.89000 * 9 7 6 19 19 C 1.47201 * 109.46806 * 85.47493 * 18 9 7 20 20 N 7.75755 * 153.52747 * 339.76763 * 2 1 3 21 21 S 1.75832 * 109.07262 * 359.53651 * 6 5 4 22 22 C 1.33849 * 122.44656 * 84.99596 * 4 3 2 23 23 C 1.50699 * 124.51489 * 0.06581 * 22 4 3 24 24 H 1.08998 * 109.47029 * 60.00031 * 1 2 3 25 25 H 1.09003 * 109.47196 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46931 * 299.99872 * 1 2 3 27 27 H 1.09002 * 109.47372 * 239.99516 * 2 1 3 28 28 H 1.09003 * 109.46962 * 120.00448 * 2 1 3 29 29 H 1.09004 * 109.47459 * 60.00004 * 3 2 1 30 30 H 1.09003 * 109.47486 * 300.00127 * 3 2 1 31 31 H 1.08003 * 123.36157 * 0.02963 * 5 4 3 32 32 H 0.97002 * 119.99585 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.47134 * 205.46923 * 18 9 7 34 34 H 1.09000 * 109.46810 * 325.47250 * 18 9 7 35 35 H 1.09000 * 109.47140 * 179.97438 * 23 22 4 36 36 H 1.09005 * 109.46855 * 299.98132 * 23 22 4 37 37 H 1.08997 * 109.47645 * 59.97909 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2839 1.5373 1.1570 6 6 5.6343 1.5238 0.9400 7 6 6.6628 1.6143 1.9788 8 8 6.3428 1.8147 3.1362 9 7 7.9632 1.4757 1.6533 10 6 8.9312 1.6837 2.5985 11 1 8.6595 1.7674 3.6405 12 6 10.2633 1.7929 2.2169 13 7 10.5698 2.0256 0.9604 14 14 11.6178 1.6089 3.4900 15 1 11.5322 0.2635 4.1128 16 1 12.9400 1.7661 2.8323 17 1 11.4581 2.6500 4.5368 18 6 8.3409 1.1023 0.2879 19 6 8.4164 2.3114 -0.5482 20 7 8.4741 3.2447 -1.1959 21 16 5.9375 1.3729 -0.7854 22 6 4.2656 1.3438 -1.1243 23 6 3.6764 1.2240 -2.5061 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8409 1.6173 2.1387 32 1 11.4994 2.1021 0.6941 33 1 9.3127 0.6089 0.3018 34 1 7.5941 0.4227 -0.1226 35 1 4.4802 1.1598 -3.2395 36 1 3.0608 0.3262 -2.5621 37 1 3.0620 2.0994 -2.7164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299255696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:16 Heat of formation + Delta-G solvation = 23.854382 kcal Electronic energy + Delta-G solvation = -20906.119074 eV Core-core repulsion = 17775.491382 eV Total energy + Delta-G solvation = -3130.627691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.09604 -38.28248 -35.87899 -34.47629 -34.01350 -32.16233 -31.45364 -28.42118 -27.81163 -26.02819 -24.57279 -22.81376 -21.69381 -19.71450 -18.16567 -17.81808 -17.58382 -16.52770 -15.68575 -15.20129 -14.70806 -14.39301 -14.17358 -14.07746 -13.62044 -13.48530 -13.21798 -12.92347 -12.85832 -12.42928 -12.14743 -11.98448 -11.75245 -11.72618 -11.60685 -11.38541 -11.32169 -11.13227 -11.03881 -10.63896 -10.60874 -10.52687 -10.44783 -9.97035 -9.40794 -8.83037 -8.30224 -8.06198 -7.86519 -6.63756 -4.09553 1.06423 1.99573 2.39752 2.80615 3.11664 3.15081 3.17759 3.53715 3.85198 4.00901 4.09413 4.65105 4.77416 4.96606 4.96879 5.06957 5.09021 5.20752 5.34034 5.47732 5.58418 5.61152 5.70557 5.78381 5.83662 5.88822 5.92961 5.98884 6.05712 6.16065 6.32364 6.42618 6.51884 6.75990 6.90238 7.31843 7.73810 8.14145 8.61528 8.84170 9.01646 9.58194 10.38719 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.004704 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.995320 B = 5951.288386 C = 6734.918308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.056 4.056 4 C -0.114 4.114 5 C -0.080 4.080 6 C -0.226 4.226 7 C 0.514 3.486 8 O -0.566 6.566 9 N -0.430 5.430 10 C -0.301 4.301 11 H 0.116 0.884 12 C 0.029 3.971 13 N -0.878 5.878 14 Si 0.938 3.062 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.202 3.798 19 C 0.242 3.758 20 N -0.456 5.456 21 S 0.200 5.800 22 C -0.248 4.248 23 C -0.074 4.074 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.278 0.722 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 -6.359 -6.195 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.096 4.096 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.347 4.347 7 C 0.303 3.697 8 O -0.451 6.451 9 N -0.148 5.148 10 C -0.428 4.428 11 H 0.134 0.866 12 C -0.175 4.175 13 N -0.517 5.517 14 Si 0.764 3.236 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.196 1.196 18 C 0.073 3.927 19 C -0.077 4.077 20 N -0.137 5.137 21 S 0.471 5.529 22 C -0.366 4.366 23 C -0.133 4.133 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.162 0.838 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.852 -4.936 -7.581 13.375 hybrid contribution -0.480 -0.162 1.508 1.590 sum -10.331 -5.098 -6.074 13.023 Atomic orbital electron populations 1.21787 0.96055 1.01394 1.01655 1.21483 0.95118 0.96612 1.02400 1.20270 0.90119 0.96916 1.02275 1.18478 0.96560 1.06014 0.91602 1.20402 0.91112 1.00569 0.99175 1.24896 0.98536 1.15019 0.96238 1.16755 0.81489 0.84052 0.87369 1.90677 1.80678 1.54714 1.19030 1.43562 1.04736 1.58639 1.07906 1.19875 0.85194 1.47125 0.90598 0.86619 1.25380 0.98781 0.95841 0.97490 1.69819 1.20442 1.45013 1.16473 0.85784 0.78606 0.79437 0.79784 1.19429 1.20725 1.19596 1.19330 1.04615 0.88633 0.80125 1.28995 0.90702 0.95192 0.92838 1.80957 1.11402 1.09992 1.11305 1.83806 1.00736 1.67901 1.00438 1.24449 1.01593 1.10982 0.99603 1.20225 1.00279 1.02140 0.90610 0.92940 0.92914 0.92751 0.92039 0.91742 0.91322 0.91513 0.83794 0.91088 0.82681 0.89716 0.91952 0.91141 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 3 C -0.06 -0.67 5.11 -27.89 -0.14 -0.81 16 4 C -0.11 -1.74 5.04 -106.45 -0.54 -2.28 16 5 C -0.08 -1.45 9.79 -40.40 -0.40 -1.85 16 6 C -0.23 -4.61 6.20 -36.80 -0.23 -4.84 16 7 C 0.51 12.49 7.53 -12.95 -0.10 12.40 16 8 O -0.57 -15.40 16.46 5.15 0.08 -15.31 16 9 N -0.43 -10.39 2.59 -119.50 -0.31 -10.70 16 10 C -0.30 -7.70 9.46 -15.01 -0.14 -7.84 16 11 H 0.12 3.09 7.26 -52.48 -0.38 2.71 16 12 C 0.03 0.68 5.07 -17.45 -0.09 0.60 16 13 N -0.88 -21.26 9.01 55.50 0.50 -20.76 16 14 Si 0.94 19.12 29.59 -169.99 -5.03 14.09 16 15 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 C 0.20 4.21 4.73 -6.83 -0.03 4.18 16 19 C 0.24 5.40 10.79 -20.71 -0.22 5.18 16 20 N -0.46 -10.73 18.55 42.21 0.78 -9.95 16 21 S 0.20 3.46 15.91 -107.50 -1.71 1.74 16 22 C -0.25 -3.72 6.28 -35.85 -0.22 -3.95 16 23 C -0.07 -0.85 9.44 36.01 0.34 -0.51 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.63 7.41 -51.93 -0.38 0.25 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 30 H 0.07 0.72 7.45 -51.93 -0.39 0.34 16 31 H 0.14 2.57 8.06 -52.48 -0.42 2.14 16 32 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.16 3.24 5.95 -51.93 -0.31 2.94 16 34 H 0.09 1.52 4.91 -25.54 -0.13 1.39 16 35 H 0.06 0.68 8.11 -51.93 -0.42 0.25 16 36 H 0.07 0.70 7.41 -51.93 -0.38 0.31 16 37 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -29.25 322.15 -6.86 -36.11 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.47 Total: 1.97 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.56 Total: -2.05 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.97 Total: -41.41 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.31 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.71 Total: 1.74 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.25 -6.86 -36.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299255696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.969 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds