Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47412 * 8.11112 * 3 2 1 5 5 N 1.46500 * 109.47257 * 180.02562 * 4 3 2 6 6 C 1.46492 * 120.00058 * 262.29220 * 5 4 3 7 7 C 1.50697 * 109.47371 * 270.00211 * 6 5 4 8 8 H 1.08008 * 120.00106 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00088 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99921 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99729 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47133 * 59.99895 * 11 9 7 13 13 H 1.48499 * 109.46832 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47292 * 299.99409 * 11 9 7 15 15 C 1.34779 * 119.99999 * 82.29235 * 5 4 3 16 16 O 1.21694 * 119.99904 * 181.40301 * 15 5 4 17 17 C 1.46681 * 120.00223 * 1.40929 * 15 5 4 18 18 C 1.37872 * 126.23573 * 170.70702 * 17 15 5 19 19 C 1.39829 * 107.08443 * 180.27199 * 18 17 15 20 20 C 1.35454 * 107.86717 * 359.75902 * 19 18 17 21 21 N 1.48023 * 125.56591 * 179.97438 * 20 19 18 22 22 O 1.21801 * 119.99961 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00217 * 0.04837 * 21 20 19 24 24 N 1.35536 * 108.86865 * 0.02562 * 20 19 18 25 25 H 0.96997 * 125.67325 * 179.97438 * 24 20 19 26 26 H 1.09006 * 109.46949 * 248.10832 * 3 2 1 27 27 H 1.08999 * 109.47234 * 128.11581 * 3 2 1 28 28 H 1.08993 * 109.47225 * 60.00115 * 4 3 2 29 29 H 1.09011 * 109.47178 * 300.00119 * 4 3 2 30 30 H 1.09006 * 109.47271 * 30.00217 * 6 5 4 31 31 H 1.09000 * 109.47547 * 150.00017 * 6 5 4 32 32 H 0.97006 * 119.99589 * 180.02562 * 10 9 7 33 33 H 1.07997 * 126.45431 * 0.02562 * 18 17 15 34 34 H 1.08000 * 126.07180 * 179.72735 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.4271 -0.2035 5 7 4.5836 -1.4265 -0.2029 6 6 5.3166 -1.4171 -1.4712 7 6 5.5686 -2.8346 -1.9164 8 1 5.2181 -3.6601 -1.3145 9 6 6.2474 -3.0778 -3.0916 10 7 6.6746 -2.0727 -3.8243 11 14 6.5603 -4.8350 -3.6430 12 1 5.2633 -5.5345 -3.8265 13 1 7.3032 -4.8254 -4.9288 14 1 7.3626 -5.5418 -2.6125 15 6 5.2570 -1.4346 0.9646 16 8 6.4737 -1.4083 0.9654 17 6 4.5235 -1.4753 2.2341 18 6 5.0699 -1.6675 3.4853 19 6 4.0151 -1.6404 4.4028 20 6 2.8688 -1.4314 3.7121 21 7 1.5142 -1.3345 4.3011 22 8 0.5497 -1.1443 3.5820 23 8 1.3642 -1.4445 5.5048 24 7 3.1644 -1.3266 2.3935 25 1 2.5243 -1.1755 1.6806 26 1 2.9711 0.3840 0.9536 27 1 2.9710 0.6351 -0.8085 28 1 2.7556 -1.8104 -1.1570 29 1 2.7556 -2.0616 0.6051 30 1 4.7277 -0.8980 -2.2274 31 1 6.2688 -0.9038 -1.3368 32 1 7.1519 -2.2438 -4.6513 33 1 6.1151 -1.8154 3.7132 34 1 4.0992 -1.7647 5.4723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299353251.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = 68.851402 kcal Electronic energy + Delta-G solvation = -23088.641078 eV Core-core repulsion = 19413.671390 eV Total energy + Delta-G solvation = -3674.969689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.81661 -41.63474 -39.12076 -37.41064 -36.78218 -35.81255 -33.31064 -31.97917 -31.09886 -30.87928 -27.92175 -26.29603 -24.63155 -23.66037 -21.91739 -21.26081 -20.92572 -19.09560 -18.60076 -18.11946 -17.82140 -17.13634 -16.72731 -16.07570 -15.54249 -15.35104 -14.66099 -14.41073 -14.23774 -14.02106 -13.62402 -13.41970 -13.21493 -12.79928 -12.57512 -12.43949 -12.15524 -11.84718 -11.60699 -11.52991 -11.39993 -11.38097 -11.13618 -10.79847 -10.40657 -10.01486 -9.79714 -9.73707 -9.15821 -8.64557 -8.29681 -6.27127 -4.33696 -0.20636 0.80757 1.25523 2.10082 2.39168 2.48036 2.60039 3.06458 3.19909 3.25415 3.26471 3.29563 3.72075 4.22609 4.28367 4.38366 4.51307 4.52769 4.61469 4.81483 5.08887 5.14580 5.33559 5.45952 5.57250 5.75897 5.84629 6.15366 6.46902 6.61217 6.93592 7.10972 7.27621 7.41930 7.66329 7.73696 7.92145 8.28955 8.69468 9.33072 10.80954 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.004701 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.359564 B = 5954.467274 C = 6742.966659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.190 3.810 3 C -0.070 4.070 4 C 0.093 3.907 5 N -0.584 5.584 6 C 0.244 3.756 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.900 3.100 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.574 3.426 16 O -0.495 6.495 17 C 0.052 3.948 18 C -0.124 4.124 19 C -0.085 4.085 20 C 0.051 3.949 21 N 0.058 4.942 22 O -0.178 6.178 23 O -0.137 6.137 24 N -0.526 5.526 25 H 0.435 0.565 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.267 0.733 33 H 0.177 0.823 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 3.133 11.554 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.034 4.034 5 N -0.315 5.315 6 C 0.126 3.874 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.727 3.273 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.200 1.200 15 C 0.358 3.642 16 O -0.369 6.369 17 C -0.068 4.068 18 C -0.149 4.149 19 C -0.114 4.114 20 C -0.145 4.145 21 N 0.575 4.425 22 O -0.387 6.387 23 O -0.354 6.354 24 N -0.139 5.139 25 H 0.287 0.713 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.194 0.806 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.397 3.199 10.861 12.543 hybrid contribution -0.226 -0.864 -0.560 1.054 sum -5.623 2.336 10.302 11.966 Atomic orbital electron populations 1.81272 1.12379 1.06820 1.07419 1.28796 0.94845 0.94729 0.94507 1.20145 0.82494 1.01727 1.06822 1.21777 0.83010 0.92851 1.05714 1.48281 1.04464 1.70347 1.08400 1.19572 0.92779 0.98362 0.76654 1.21313 1.37799 0.91843 1.06859 0.92224 1.24901 0.94927 0.97639 0.96184 1.69895 1.37576 1.30792 1.14508 0.86527 0.78520 0.84223 0.78030 1.20169 1.21024 1.20008 1.16866 0.86969 0.79033 0.81320 1.90908 1.11554 1.48843 1.85554 1.21685 0.80200 1.06957 0.97947 1.21518 1.00476 1.04285 0.88624 1.20925 0.88212 1.00795 1.01424 1.20954 0.84459 1.22862 0.86270 1.42619 1.01085 0.97906 1.00939 1.94625 1.30774 1.53417 1.59881 1.94567 1.91035 1.53388 0.96365 1.43508 1.09181 1.54704 1.06483 0.71318 0.87965 0.84511 0.86193 0.91124 0.93958 0.92750 0.92322 0.80604 0.81009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.78 18.54 42.15 0.78 -5.00 16 2 C 0.19 2.23 14.88 -20.76 -0.31 1.92 16 3 C -0.07 -0.69 5.00 -29.52 -0.15 -0.84 16 4 C 0.09 1.16 4.91 -4.04 -0.02 1.14 16 5 N -0.58 -9.71 2.48 -176.61 -0.44 -10.15 16 6 C 0.24 5.25 5.14 -5.20 -0.03 5.22 16 7 C -0.54 -13.38 9.39 -34.44 -0.32 -13.70 16 8 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 11 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.57 9.68 7.58 -12.85 -0.10 9.58 16 16 O -0.50 -10.22 16.47 5.19 0.09 -10.13 16 17 C 0.05 0.69 6.45 -81.98 -0.53 0.16 16 18 C -0.12 -1.39 10.67 -39.12 -0.42 -1.81 16 19 C -0.08 -0.87 10.46 -39.98 -0.42 -1.29 16 20 C 0.05 0.62 8.06 -144.05 -1.16 -0.54 16 21 N 0.06 0.79 4.45 33.00 0.15 0.94 16 22 O -0.18 -2.68 19.24 -29.46 -0.57 -3.25 16 23 O -0.14 -1.85 19.00 -29.46 -0.56 -2.41 16 24 N -0.53 -6.35 4.14 -6.49 -0.03 -6.37 16 25 H 0.43 4.98 3.05 -40.82 -0.12 4.85 16 26 H 0.10 0.93 6.39 -51.93 -0.33 0.60 16 27 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.12 1.49 8.01 -51.93 -0.42 1.07 16 29 H 0.07 0.83 5.14 -51.92 -0.27 0.56 16 30 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.05 1.33 7.40 -51.93 -0.38 0.94 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -30.19 314.88 -6.42 -36.61 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -2.76 Total: 1.61 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -3.55 Total: 1.47 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 1.20 Total: -43.73 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.04 Total: -15.79 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.19 -6.42 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299353251.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.461 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds