Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47412 * 8.11112 * 3 2 1 5 5 N 1.46500 * 109.47257 * 180.02562 * 4 3 2 6 6 C 1.46492 * 120.00058 * 262.29220 * 5 4 3 7 7 C 1.50697 * 109.47371 * 270.00211 * 6 5 4 8 8 H 1.08008 * 120.00106 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00088 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99921 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99729 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47133 * 59.99895 * 11 9 7 13 13 H 1.48499 * 109.46832 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47292 * 299.99409 * 11 9 7 15 15 C 1.34779 * 119.99999 * 82.29235 * 5 4 3 16 16 O 1.21694 * 119.99904 * 181.40301 * 15 5 4 17 17 C 1.46681 * 120.00223 * 1.40929 * 15 5 4 18 18 C 1.37872 * 126.23573 * 170.70702 * 17 15 5 19 19 C 1.39829 * 107.08443 * 180.27199 * 18 17 15 20 20 C 1.35454 * 107.86717 * 359.75902 * 19 18 17 21 21 N 1.48023 * 125.56591 * 179.97438 * 20 19 18 22 22 O 1.21801 * 119.99961 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00217 * 0.04837 * 21 20 19 24 24 N 1.35536 * 108.86865 * 0.02562 * 20 19 18 25 25 H 0.96997 * 125.67325 * 179.97438 * 24 20 19 26 26 H 1.09006 * 109.46949 * 248.10832 * 3 2 1 27 27 H 1.08999 * 109.47234 * 128.11581 * 3 2 1 28 28 H 1.08993 * 109.47225 * 60.00115 * 4 3 2 29 29 H 1.09011 * 109.47178 * 300.00119 * 4 3 2 30 30 H 1.09006 * 109.47271 * 30.00217 * 6 5 4 31 31 H 1.09000 * 109.47547 * 150.00017 * 6 5 4 32 32 H 0.97006 * 119.99589 * 180.02562 * 10 9 7 33 33 H 1.07997 * 126.45431 * 0.02562 * 18 17 15 34 34 H 1.08000 * 126.07180 * 179.72735 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.4271 -0.2035 5 7 4.5836 -1.4265 -0.2029 6 6 5.3166 -1.4171 -1.4712 7 6 5.5686 -2.8346 -1.9164 8 1 5.2181 -3.6601 -1.3145 9 6 6.2474 -3.0778 -3.0916 10 7 6.6746 -2.0727 -3.8243 11 14 6.5603 -4.8350 -3.6430 12 1 5.2633 -5.5345 -3.8265 13 1 7.3032 -4.8254 -4.9288 14 1 7.3626 -5.5418 -2.6125 15 6 5.2570 -1.4346 0.9646 16 8 6.4737 -1.4083 0.9654 17 6 4.5235 -1.4753 2.2341 18 6 5.0699 -1.6675 3.4853 19 6 4.0151 -1.6404 4.4028 20 6 2.8688 -1.4314 3.7121 21 7 1.5142 -1.3345 4.3011 22 8 0.5497 -1.1443 3.5820 23 8 1.3642 -1.4445 5.5048 24 7 3.1644 -1.3266 2.3935 25 1 2.5243 -1.1755 1.6806 26 1 2.9711 0.3840 0.9536 27 1 2.9710 0.6351 -0.8085 28 1 2.7556 -1.8104 -1.1570 29 1 2.7556 -2.0616 0.6051 30 1 4.7277 -0.8980 -2.2274 31 1 6.2688 -0.9038 -1.3368 32 1 7.1519 -2.2438 -4.6513 33 1 6.1151 -1.8154 3.7132 34 1 4.0992 -1.7647 5.4723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299353251.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = 52.512956 kcal Electronic energy + Delta-G solvation = -23089.349567 eV Core-core repulsion = 19413.671390 eV Total energy + Delta-G solvation = -3675.678177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.82846 -42.68703 -40.41390 -38.52952 -37.83827 -37.07459 -35.06082 -33.22929 -32.13851 -31.96365 -29.51192 -27.52132 -25.76364 -25.22698 -22.99465 -22.35296 -21.97901 -20.23048 -19.65197 -19.18256 -18.85064 -18.54513 -18.33550 -17.34748 -16.80116 -16.51000 -16.20052 -15.62529 -15.38105 -15.11540 -14.69080 -14.45216 -14.26325 -14.22268 -13.84755 -13.76255 -13.34270 -13.18177 -12.92794 -12.90158 -12.60505 -12.57341 -12.46678 -12.39605 -12.20211 -11.79002 -11.23643 -10.65772 -10.60632 -10.21909 -9.77075 -8.22173 -6.34316 -1.26519 -0.19849 0.18830 1.16734 1.35967 1.42093 1.44245 1.50470 1.50792 1.60577 1.83881 2.07568 2.41153 2.68807 3.10315 3.17634 3.40327 3.54302 3.57743 3.70968 3.91699 4.22462 4.41791 4.59814 4.66393 4.75232 4.86915 5.01634 5.23563 5.27788 5.38525 5.54546 5.74380 6.03648 6.28955 6.33507 6.34429 6.71844 6.96739 7.36192 8.84764 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.004701 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.359564 B = 5954.467274 C = 6742.966659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.059 4.059 4 C 0.092 3.908 5 N -0.585 5.585 6 C 0.258 3.742 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.019 3.981 10 N -0.920 5.920 11 Si 0.955 3.045 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.277 1.277 15 C 0.575 3.425 16 O -0.541 6.541 17 C 0.039 3.961 18 C -0.109 4.109 19 C -0.062 4.062 20 C 0.046 3.954 21 N 0.059 4.941 22 O -0.220 6.220 23 O -0.117 6.117 24 N -0.525 5.525 25 H 0.435 0.565 26 H 0.116 0.884 27 H 0.156 0.844 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.267 0.733 33 H 0.193 0.807 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 2.612 13.192 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.100 4.100 4 C -0.034 4.034 5 N -0.315 5.315 6 C 0.138 3.862 7 C -0.587 4.587 8 H 0.073 0.927 9 C -0.181 4.181 10 N -0.560 5.560 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.203 1.203 15 C 0.362 3.638 16 O -0.418 6.418 17 C -0.080 4.080 18 C -0.135 4.135 19 C -0.091 4.091 20 C -0.151 4.151 21 N 0.573 4.427 22 O -0.419 6.419 23 O -0.341 6.341 24 N -0.138 5.138 25 H 0.287 0.713 26 H 0.134 0.866 27 H 0.174 0.826 28 H 0.139 0.861 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.210 0.790 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.717 2.691 12.441 13.954 hybrid contribution -0.110 -0.706 -0.931 1.174 sum -5.827 1.985 11.510 13.053 Atomic orbital electron populations 1.81305 1.13715 1.08179 1.09056 1.28886 0.94795 0.93401 0.93061 1.20106 0.81184 1.00374 1.08346 1.21913 0.80407 0.94712 1.06367 1.48072 1.06021 1.70322 1.07080 1.19071 0.92026 0.96376 0.78717 1.21657 1.37150 0.93223 1.06625 0.92668 1.25633 0.95002 1.00921 0.96564 1.69990 1.38580 1.32449 1.14936 0.85648 0.78590 0.80263 0.77416 1.19170 1.20803 1.20277 1.17194 0.86626 0.77751 0.82225 1.90881 1.13572 1.50923 1.86414 1.21106 0.80648 1.09337 0.96867 1.21827 1.01529 1.02383 0.87712 1.21346 0.86559 0.98343 1.02820 1.21120 0.84107 1.23391 0.86446 1.42758 1.01438 0.97604 1.00885 1.94646 1.31575 1.55636 1.60022 1.94545 1.91225 1.51938 0.96402 1.43376 1.08661 1.55080 1.06728 0.71290 0.86601 0.82631 0.86095 0.90064 0.93577 0.96114 0.92374 0.78975 0.77576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.55 18.54 20.01 0.37 -12.18 16 2 C 0.22 4.84 14.88 89.44 1.33 6.17 16 3 C -0.06 -1.07 5.00 28.79 0.14 -0.93 16 4 C 0.09 2.18 4.91 86.38 0.42 2.60 16 5 N -0.59 -19.29 2.48 -830.89 -2.06 -21.35 16 6 C 0.26 11.27 5.14 85.63 0.44 11.71 16 7 C -0.55 -27.35 9.39 25.60 0.24 -27.11 16 8 H 0.06 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.02 0.99 5.46 84.66 0.46 1.45 16 10 N -0.92 -50.01 13.29 21.45 0.28 -49.73 16 11 Si 0.96 41.13 29.54 68.60 2.03 43.16 16 12 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 13 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 15 C 0.58 19.15 7.58 86.45 0.65 19.80 16 16 O -0.54 -22.57 16.47 -4.33 -0.07 -22.64 16 17 C 0.04 0.97 6.45 40.35 0.26 1.23 16 18 C -0.11 -2.11 10.67 22.57 0.24 -1.87 16 19 C -0.06 -1.03 10.46 22.01 0.23 -0.80 16 20 C 0.05 0.99 8.06 127.91 1.03 2.02 16 21 N 0.06 1.48 4.45 -49.52 -0.22 1.26 16 22 O -0.22 -6.40 19.24 18.88 0.36 -6.04 16 23 O -0.12 -2.84 19.00 18.89 0.36 -2.48 16 24 N -0.53 -11.60 4.14 -174.45 -0.72 -12.32 16 25 H 0.44 9.24 3.05 -92.71 -0.28 8.96 16 26 H 0.12 1.89 6.39 -2.38 -0.02 1.88 16 27 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.12 2.89 8.01 -2.39 -0.02 2.87 16 29 H 0.08 1.80 5.14 -2.38 -0.01 1.78 16 30 H 0.05 1.97 8.07 -2.38 -0.02 1.95 16 31 H 0.02 1.05 7.40 -2.39 -0.02 1.03 16 32 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 33 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.21 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -65.88 314.88 6.69 -59.19 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.90 Total: 8.85 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.46 Total: 14.27 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -2.34 Total: -94.31 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: 0.65 Total: -31.16 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -65.88 6.69 -59.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299353251.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.704 kcal (2) G-P(sol) polarization free energy of solvation -65.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds