Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47219 * 2 1 4 4 C 1.36937 * 119.99917 * 273.76901 * 3 2 1 5 5 H 1.08001 * 120.00339 * 176.63538 * 4 3 2 6 6 C 1.38813 * 119.99940 * 356.63694 * 4 3 2 7 7 N 1.31617 * 119.99948 * 31.67713 * 6 4 3 8 8 Si 1.86807 * 120.00092 * 211.67710 * 6 4 3 9 9 H 1.48504 * 109.46930 * 59.99699 * 8 6 4 10 10 H 1.48496 * 109.47314 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47011 * 300.00332 * 8 6 4 12 12 C 1.46504 * 120.00332 * 93.76676 * 3 2 1 13 13 C 1.50698 * 109.46677 * 87.15877 * 12 3 2 14 14 N 1.34214 * 126.05201 * 275.21573 * 13 12 3 15 15 C 1.31522 * 108.61742 * 180.02562 * 14 13 12 16 16 C 1.47017 * 125.76238 * 179.97438 * 15 14 13 17 17 C 1.36180 * 125.33613 * 180.02562 * 16 15 14 18 18 C 1.37724 * 114.44382 * 179.97438 * 17 16 15 19 19 C 1.33714 * 115.19687 * 359.97438 * 18 17 16 20 20 S 1.75832 * 109.95976 * 359.75903 * 19 18 17 21 21 O 1.34537 * 108.47827 * 0.02562 * 15 14 13 22 22 C 1.34472 * 126.05683 * 95.24747 * 13 12 3 23 23 C 1.50703 * 126.33208 * 0.02562 * 22 13 12 24 24 H 1.09009 * 109.47189 * 300.00176 * 1 2 3 25 25 H 1.09000 * 109.47167 * 60.00209 * 1 2 3 26 26 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47112 * 239.99519 * 2 1 3 28 28 H 1.09000 * 109.47167 * 119.99791 * 2 1 3 29 29 H 0.96999 * 119.99837 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47249 * 327.15924 * 12 3 2 31 31 H 1.09001 * 109.46925 * 207.15394 * 12 3 2 32 32 H 1.07996 * 122.77449 * 0.02562 * 17 16 15 33 33 H 1.07996 * 122.40344 * 180.02562 * 18 17 16 34 34 H 1.08005 * 125.02148 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47146 * 179.73918 * 23 22 13 36 36 H 1.08994 * 109.46956 * 299.74747 * 23 22 13 37 37 H 1.09003 * 109.46946 * 59.74650 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1731 2.0527 -1.1834 5 1 2.4809 3.0879 -1.1806 6 6 1.9342 1.4028 -2.3865 7 7 1.0246 0.4538 -2.4526 8 14 2.9037 1.8752 -3.9118 9 1 4.3515 1.6546 -3.6661 10 1 2.4633 1.0388 -5.0570 11 1 2.6674 3.3076 -4.2246 12 6 2.3411 2.0441 1.2660 13 6 3.7687 1.7410 1.6419 14 7 4.1983 0.6526 2.2992 15 6 5.5026 0.7381 2.4455 16 6 6.3590 -0.2527 3.1134 17 6 7.7094 -0.1551 3.2605 18 6 8.2883 -1.2136 3.9247 19 6 7.4409 -2.1688 4.3215 20 16 5.7990 -1.7460 3.8555 21 8 5.9206 1.8859 1.8818 22 6 4.8375 2.5134 1.3786 23 6 4.8271 3.8362 0.6567 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.8580 -0.0006 -3.2932 30 1 1.6744 1.6795 2.0474 31 1 2.2156 3.1211 1.1545 32 1 8.2789 0.6834 2.8878 33 1 9.3504 -1.2678 4.1125 34 1 7.7227 -3.0653 4.8538 35 1 5.8431 4.2267 0.5990 36 1 4.4333 3.6975 -0.3501 37 1 4.1972 4.5413 1.1992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299542090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = 87.913100 kcal Electronic energy + Delta-G solvation = -20940.979858 eV Core-core repulsion = 17813.129961 eV Total energy + Delta-G solvation = -3127.849897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.74543 -37.72526 -36.25055 -34.23242 -32.72845 -31.08714 -29.97752 -29.30036 -27.02423 -25.41470 -23.86713 -23.14762 -21.54002 -21.10652 -20.12542 -18.71734 -17.84648 -16.65529 -16.35595 -15.92867 -15.24970 -14.90195 -13.97211 -13.77555 -13.58033 -13.28857 -13.23496 -13.01354 -12.74393 -12.59987 -12.31548 -12.06387 -11.86042 -11.55153 -11.25627 -10.89408 -10.85878 -10.69513 -10.65340 -10.42829 -10.10678 -9.90820 -9.78092 -9.31144 -9.21910 -8.58505 -8.23255 -7.67771 -6.98569 -5.81963 -3.01954 0.46164 1.31874 1.90474 1.99211 2.63744 3.11456 3.33569 3.41143 3.47837 3.50964 4.20434 4.53139 4.91162 5.18661 5.22380 5.31221 5.40813 5.50581 5.55128 5.65991 5.79087 5.86160 5.90047 6.13251 6.24091 6.32497 6.40952 6.56707 6.59531 6.72013 6.81922 7.02915 7.15213 7.27818 7.69304 7.84409 8.18174 8.21286 8.31967 9.23447 9.86743 10.33348 11.21610 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.004680 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.815857 B = 5981.632475 C = 6406.694903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.167 3.833 3 N -0.587 5.587 4 C -0.261 4.261 5 H 0.077 0.923 6 C 0.010 3.990 7 N -0.879 5.879 8 Si 0.875 3.125 9 H -0.288 1.288 10 H -0.291 1.291 11 H -0.284 1.284 12 C 0.226 3.774 13 C 0.000 4.000 14 N -0.448 5.448 15 C 0.221 3.779 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.134 4.134 19 C -0.230 4.230 20 S 0.207 5.793 21 O -0.200 6.200 22 C -0.039 4.039 23 C -0.064 4.064 24 H 0.009 0.991 25 H 0.094 0.906 26 H 0.018 0.982 27 H 0.077 0.923 28 H 0.013 0.987 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.182 -0.806 12.442 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 N -0.307 5.307 4 C -0.389 4.389 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.523 5.523 8 Si 0.704 3.296 9 H -0.215 1.215 10 H -0.217 1.217 11 H -0.210 1.210 12 C 0.097 3.903 13 C -0.126 4.126 14 N -0.179 5.179 15 C 0.018 3.982 16 C -0.228 4.228 17 C -0.150 4.150 18 C -0.164 4.164 19 C -0.367 4.367 20 S 0.472 5.528 21 O -0.088 6.088 22 C -0.093 4.093 23 C -0.120 4.120 24 H 0.028 0.972 25 H 0.112 0.888 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.322 -2.118 12.676 15.877 hybrid contribution 2.513 1.323 -1.401 3.167 sum 11.835 -0.795 11.275 16.365 Atomic orbital electron populations 1.22311 0.98985 0.98138 1.01083 1.20827 0.92490 0.84126 0.98281 1.44138 1.74205 1.11724 1.00670 1.19149 1.40910 0.95549 0.83259 0.90514 1.24682 0.98467 0.98501 0.97154 1.70273 1.28618 1.28107 1.25314 0.86749 0.81702 0.77731 0.83429 1.21472 1.21737 1.21010 1.19096 0.85438 0.96697 0.89096 1.23298 1.00775 0.90007 0.98511 1.70714 1.07215 1.23518 1.16433 1.22100 0.89020 0.86611 1.00510 1.21472 0.94872 0.98509 1.07959 1.20603 0.92209 1.00769 1.01434 1.19915 1.01187 0.93960 1.01354 1.26016 0.97018 1.04811 1.08829 1.84528 1.05897 1.11920 1.50411 1.84396 1.37137 1.29990 1.57229 1.23356 0.83815 0.98894 1.03242 1.20302 1.03008 0.88314 1.00421 0.97226 0.88783 0.96259 0.90505 0.96837 0.93672 0.92719 0.91498 0.83760 0.83925 0.81416 0.91339 0.88234 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.67 37.16 0.36 -3.14 16 2 C 0.17 4.23 5.69 -4.04 -0.02 4.21 16 3 N -0.59 -14.56 2.52 -174.61 -0.44 -15.00 16 4 C -0.26 -6.84 9.65 -15.06 -0.15 -6.99 16 5 H 0.08 1.91 7.25 -52.49 -0.38 1.53 16 6 C 0.01 0.27 4.92 -17.43 -0.09 0.19 16 7 N -0.88 -24.47 8.36 55.49 0.46 -24.00 16 8 Si 0.87 21.19 29.65 -169.99 -5.04 16.15 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.23 4.77 6.03 -5.19 -0.03 4.74 16 13 C 0.00 0.00 6.68 -82.88 -0.55 -0.55 16 14 N -0.45 -9.39 11.33 -8.13 -0.09 -9.49 16 15 C 0.22 4.19 8.09 -14.13 -0.11 4.08 16 16 C -0.11 -1.70 6.46 -36.77 -0.24 -1.94 16 17 C -0.12 -1.48 10.15 -40.51 -0.41 -1.90 16 18 C -0.13 -1.37 10.15 -41.36 -0.42 -1.79 16 19 C -0.23 -2.28 11.21 29.15 0.33 -1.95 16 20 S 0.21 2.70 23.30 -107.50 -2.51 0.20 16 21 O -0.20 -3.77 10.79 3.39 0.04 -3.73 16 22 C -0.04 -0.73 7.38 -35.64 -0.26 -1.00 16 23 C -0.06 -0.94 9.85 36.01 0.35 -0.59 16 24 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 25 H 0.09 2.51 6.12 -51.93 -0.32 2.19 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 2.16 5.96 -51.93 -0.31 1.85 16 28 H 0.01 0.33 8.04 -51.93 -0.42 -0.09 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.05 1.13 8.09 -51.93 -0.42 0.71 16 31 H 0.07 1.28 7.60 -51.93 -0.39 0.88 16 32 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.63 7.42 -51.93 -0.39 1.24 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -30.44 328.73 -8.59 -39.03 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.72 Total: -1.48 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.24 Total: -6.63 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.07 Total: -48.49 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.04 Total: 16.15 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.51 Total: 0.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.44 -8.59 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299542090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.945 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds