Wall clock time and date at job start Tue Mar 31 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47219 * 2 1 4 4 C 1.36937 * 119.99917 * 273.76901 * 3 2 1 5 5 H 1.08001 * 120.00339 * 176.63538 * 4 3 2 6 6 C 1.38813 * 119.99940 * 356.63694 * 4 3 2 7 7 N 1.31617 * 119.99948 * 31.67713 * 6 4 3 8 8 Si 1.86807 * 120.00092 * 211.67710 * 6 4 3 9 9 H 1.48504 * 109.46930 * 59.99699 * 8 6 4 10 10 H 1.48496 * 109.47314 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47011 * 300.00332 * 8 6 4 12 12 C 1.46504 * 120.00332 * 93.76676 * 3 2 1 13 13 C 1.50698 * 109.46677 * 87.15877 * 12 3 2 14 14 N 1.34214 * 126.05201 * 275.21573 * 13 12 3 15 15 C 1.31522 * 108.61742 * 180.02562 * 14 13 12 16 16 C 1.47017 * 125.76238 * 179.97438 * 15 14 13 17 17 C 1.36180 * 125.33613 * 180.02562 * 16 15 14 18 18 C 1.37724 * 114.44382 * 179.97438 * 17 16 15 19 19 C 1.33714 * 115.19687 * 359.97438 * 18 17 16 20 20 S 1.75832 * 109.95976 * 359.75903 * 19 18 17 21 21 O 1.34537 * 108.47827 * 0.02562 * 15 14 13 22 22 C 1.34472 * 126.05683 * 95.24747 * 13 12 3 23 23 C 1.50703 * 126.33208 * 0.02562 * 22 13 12 24 24 H 1.09009 * 109.47189 * 300.00176 * 1 2 3 25 25 H 1.09000 * 109.47167 * 60.00209 * 1 2 3 26 26 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47112 * 239.99519 * 2 1 3 28 28 H 1.09000 * 109.47167 * 119.99791 * 2 1 3 29 29 H 0.96999 * 119.99837 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47249 * 327.15924 * 12 3 2 31 31 H 1.09001 * 109.46925 * 207.15394 * 12 3 2 32 32 H 1.07996 * 122.77449 * 0.02562 * 17 16 15 33 33 H 1.07996 * 122.40344 * 180.02562 * 18 17 16 34 34 H 1.08005 * 125.02148 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47146 * 179.73918 * 23 22 13 36 36 H 1.08994 * 109.46956 * 299.74747 * 23 22 13 37 37 H 1.09003 * 109.46946 * 59.74650 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1731 2.0527 -1.1834 5 1 2.4809 3.0879 -1.1806 6 6 1.9342 1.4028 -2.3865 7 7 1.0246 0.4538 -2.4526 8 14 2.9037 1.8752 -3.9118 9 1 4.3515 1.6546 -3.6661 10 1 2.4633 1.0388 -5.0570 11 1 2.6674 3.3076 -4.2246 12 6 2.3411 2.0441 1.2660 13 6 3.7687 1.7410 1.6419 14 7 4.1983 0.6526 2.2992 15 6 5.5026 0.7381 2.4455 16 6 6.3590 -0.2527 3.1134 17 6 7.7094 -0.1551 3.2605 18 6 8.2883 -1.2136 3.9247 19 6 7.4409 -2.1688 4.3215 20 16 5.7990 -1.7460 3.8555 21 8 5.9206 1.8859 1.8818 22 6 4.8375 2.5134 1.3786 23 6 4.8271 3.8362 0.6567 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.8580 -0.0006 -3.2932 30 1 1.6744 1.6795 2.0474 31 1 2.2156 3.1211 1.1545 32 1 8.2789 0.6834 2.8878 33 1 9.3504 -1.2678 4.1125 34 1 7.7227 -3.0653 4.8538 35 1 5.8431 4.2267 0.5990 36 1 4.4333 3.6975 -0.3501 37 1 4.1972 4.5413 1.1992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299542090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:16 Heat of formation + Delta-G solvation = 69.470608 kcal Electronic energy + Delta-G solvation = -20941.779585 eV Core-core repulsion = 17813.129961 eV Total energy + Delta-G solvation = -3128.649623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.17692 -38.67071 -38.08807 -35.79414 -34.14679 -32.97063 -31.24519 -30.95197 -28.63528 -26.77053 -25.33191 -24.72253 -23.02661 -22.69819 -21.66472 -19.87923 -18.94918 -18.58340 -17.83387 -17.22912 -16.81608 -16.34266 -15.59448 -15.44823 -15.13365 -14.87661 -14.40797 -14.27166 -13.85864 -13.73173 -13.65606 -13.46736 -13.29310 -13.25788 -12.98061 -12.74030 -12.54015 -12.39504 -12.23440 -11.93597 -11.77841 -11.67332 -11.46000 -11.29770 -10.44110 -10.26684 -9.56237 -9.04656 -8.89458 -7.84744 -5.05356 -0.59354 0.30195 0.72831 1.00451 1.44642 1.52681 1.54911 1.56047 1.81075 2.00252 2.55661 2.93010 3.25480 3.77964 3.90319 4.00368 4.14388 4.29410 4.31156 4.56985 4.62573 4.67931 4.69939 4.82488 4.85935 4.99193 5.04563 5.11335 5.15117 5.21085 5.25961 5.29914 5.38408 5.42335 5.66782 5.77626 6.18723 6.29242 6.73763 7.20038 7.89773 8.34976 9.18272 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.004680 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.815857 B = 5981.632475 C = 6406.694903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.176 3.824 3 N -0.600 5.600 4 C -0.260 4.260 5 H 0.089 0.911 6 C -0.041 4.041 7 N -0.905 5.905 8 Si 0.933 3.067 9 H -0.295 1.295 10 H -0.300 1.300 11 H -0.270 1.270 12 C 0.230 3.770 13 C -0.029 4.029 14 N -0.486 5.486 15 C 0.227 3.773 16 C -0.166 4.166 17 C -0.092 4.092 18 C -0.141 4.141 19 C -0.193 4.193 20 S 0.170 5.830 21 O -0.204 6.204 22 C -0.042 4.042 23 C -0.061 4.061 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.012 0.988 29 H 0.246 0.754 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.182 0.818 34 H 0.207 0.793 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.724 -0.506 13.679 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 N -0.321 5.321 4 C -0.388 4.388 5 H 0.107 0.893 6 C -0.236 4.236 7 N -0.551 5.551 8 Si 0.762 3.238 9 H -0.223 1.223 10 H -0.227 1.227 11 H -0.196 1.196 12 C 0.102 3.898 13 C -0.154 4.154 14 N -0.216 5.216 15 C 0.023 3.977 16 C -0.284 4.284 17 C -0.128 4.128 18 C -0.170 4.170 19 C -0.330 4.330 20 S 0.436 5.564 21 O -0.092 6.092 22 C -0.096 4.096 23 C -0.117 4.117 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.172 0.828 33 H 0.199 0.801 34 H 0.224 0.776 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.857 -1.783 13.928 18.379 hybrid contribution 1.888 1.145 -1.609 2.732 sum 13.746 -0.638 12.320 18.470 Atomic orbital electron populations 1.22101 0.98020 0.98671 1.00244 1.20602 0.93172 0.84626 0.96529 1.44282 1.74757 1.11413 1.01694 1.19507 1.39398 0.96148 0.83771 0.89301 1.25278 0.99397 0.99442 0.99524 1.70406 1.29833 1.29552 1.25277 0.85814 0.79631 0.77868 0.80443 1.22298 1.22690 1.19581 1.19135 0.85872 0.97377 0.87418 1.23091 1.00794 0.91087 1.00379 1.70652 1.08582 1.24282 1.18119 1.22757 0.88966 0.86699 0.99259 1.21635 0.95858 0.99475 1.11420 1.20993 0.91132 1.01327 0.99303 1.20277 1.03055 0.92860 1.00763 1.26508 0.94464 1.05444 1.06551 1.84632 1.09126 1.11665 1.51024 1.84404 1.37147 1.30168 1.57457 1.23927 0.83251 0.99789 1.02611 1.20437 1.05085 0.86899 0.99280 0.96049 0.91300 0.95098 0.93679 0.96948 0.94469 0.92903 0.89599 0.82798 0.80072 0.77568 0.88916 0.89699 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 9.67 71.98 0.70 -5.68 16 2 C 0.18 9.13 5.69 86.38 0.49 9.62 16 3 N -0.60 -30.15 2.52 -706.36 -1.78 -31.93 16 4 C -0.26 -13.66 9.65 84.03 0.81 -12.85 16 5 H 0.09 4.36 7.25 -2.91 -0.02 4.34 16 6 C -0.04 -2.23 4.92 84.86 0.42 -1.82 16 7 N -0.90 -51.66 8.36 21.65 0.18 -51.48 16 8 Si 0.93 44.22 29.65 68.60 2.03 46.25 16 9 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 10 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.23 9.73 6.03 85.63 0.52 10.25 16 13 C -0.03 -1.23 6.68 41.33 0.28 -0.95 16 14 N -0.49 -20.87 11.33 -293.49 -3.33 -24.20 16 15 C 0.23 8.70 8.09 87.04 0.70 9.40 16 16 C -0.17 -5.07 6.46 24.09 0.16 -4.91 16 17 C -0.09 -2.14 10.15 21.67 0.22 -1.92 16 18 C -0.14 -2.29 10.15 21.12 0.21 -2.08 16 19 C -0.19 -3.10 11.21 66.79 0.75 -2.35 16 20 S 0.17 4.31 23.30 -56.49 -1.32 3.00 16 21 O -0.20 -7.61 10.79 -10.80 -0.12 -7.72 16 22 C -0.04 -1.55 7.38 24.82 0.18 -1.37 16 23 C -0.06 -1.69 9.85 71.24 0.70 -0.99 16 24 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 3.74 6.12 -2.39 -0.01 3.73 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 2.63 5.96 -2.39 -0.01 2.61 16 28 H 0.01 0.62 8.04 -2.39 -0.02 0.61 16 29 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.05 2.21 8.09 -2.39 -0.02 2.19 16 31 H 0.09 3.22 7.60 -2.39 -0.02 3.21 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.66 7.42 -2.39 -0.02 2.64 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -67.72 328.73 2.89 -64.83 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.08 Total: 6.91 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.14 Total: -5.65 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -4.92 Total: -107.62 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.12 Total: -7.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.32 Total: 3.00 kcal Total: -67.72 2.89 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299542090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.300 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds