Wall clock time and date at job start Tue Mar 31 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39755 * 120.08207 * 98.41961 * 3 2 1 5 5 C 1.38046 * 120.14392 * 179.71211 * 4 3 2 6 6 C 1.38104 * 120.30589 * 0.56135 * 5 4 3 7 7 C 1.39675 * 120.15383 * 359.71515 * 6 5 4 8 8 C 1.47833 * 120.07079 * 180.02562 * 7 6 5 9 9 O 1.21559 * 119.99860 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99806 * 359.97322 * 8 7 6 11 11 C 1.39864 * 119.99826 * 174.86922 * 10 8 7 12 12 C 1.39305 * 119.94916 * 146.35699 * 11 10 8 13 13 C 1.38485 * 120.42343 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32881 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.88334 * 359.97438 * 14 13 12 16 16 C 1.41414 * 120.20476 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99927 * 151.78940 * 16 15 14 18 18 C 1.39930 * 119.99843 * 331.78026 * 16 15 14 19 19 N 1.30825 * 120.00312 * 348.99686 * 18 16 15 20 20 Si 1.86802 * 119.99664 * 168.99779 * 18 16 15 21 21 H 1.48495 * 109.47348 * 94.99420 * 20 18 16 22 22 H 1.48499 * 109.46941 * 214.99419 * 20 18 16 23 23 H 1.48505 * 109.47342 * 334.99086 * 20 18 16 24 24 C 1.38263 * 119.94837 * 326.07862 * 11 10 8 25 25 C 1.39346 * 119.85762 * 0.02562 * 7 6 5 26 26 H 1.08007 * 119.92648 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.84740 * 180.25390 * 5 4 3 28 28 H 1.08000 * 119.92290 * 179.69619 * 6 5 4 29 29 H 0.96999 * 120.00161 * 354.86909 * 10 8 7 30 30 H 1.08001 * 119.78792 * 0.02562 * 12 11 10 31 31 H 1.08003 * 119.83641 * 180.02562 * 13 12 11 32 32 H 1.08000 * 120.05977 * 179.97438 * 14 13 12 33 33 H 0.97000 * 120.00282 * 179.97438 * 19 18 16 34 34 H 1.08005 * 120.16113 * 359.97438 * 24 11 10 35 35 H 1.08001 * 120.15285 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.1780 -1.1963 5 6 4.6488 0.1848 -1.1969 6 6 5.3471 0.0051 -0.0190 7 6 4.6599 -0.1791 1.1830 8 6 5.4093 -0.3707 2.4428 9 8 4.8098 -0.5304 3.4882 10 7 6.7569 -0.3685 2.4322 11 6 7.4658 -0.4420 3.6357 12 6 8.6853 -1.1135 3.6846 13 6 9.3956 -1.1919 4.8708 14 6 8.9035 -0.6068 6.0159 15 6 7.6727 0.0751 5.9816 16 6 7.1611 0.6790 7.1536 17 1 6.5160 1.5420 7.0789 18 6 7.4905 0.1583 8.4099 19 7 8.0875 -1.0023 8.5010 20 14 7.0778 1.1203 9.9570 21 1 5.7762 0.6533 10.4980 22 1 8.1409 0.9061 10.9715 23 1 6.9884 2.5665 9.6316 24 6 6.9579 0.1569 4.7737 25 6 3.2665 -0.1817 1.1920 26 1 2.7284 0.3143 -2.1217 27 1 5.1852 0.3264 -2.1235 28 1 6.4271 0.0066 -0.0274 29 1 7.2353 -0.3159 1.5900 30 1 9.0797 -1.5753 2.7915 31 1 10.3404 -1.7146 4.8979 32 1 9.4609 -0.6709 6.9387 33 1 8.3162 -1.3630 9.3719 34 1 6.0148 0.6821 4.7357 35 1 2.7303 -0.3232 2.1188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313530402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:45 Heat of formation + Delta-G solvation = 43.105638 kcal Electronic energy + Delta-G solvation = -20894.594539 eV Core-core repulsion = 17629.357694 eV Total energy + Delta-G solvation = -3265.236846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44920 -38.95170 -37.17725 -36.56955 -34.59225 -33.17169 -31.78628 -31.52784 -29.84221 -28.15494 -25.33800 -24.48691 -23.91800 -21.64674 -20.93760 -20.28808 -18.88211 -17.80421 -16.76173 -16.38984 -15.91814 -15.35776 -15.00249 -14.82931 -14.58850 -14.42686 -14.14981 -13.94756 -13.40150 -13.12070 -13.02907 -12.89030 -12.50108 -12.27301 -12.04851 -11.72301 -11.64723 -11.33273 -11.10434 -10.69586 -10.52212 -10.20528 -9.79376 -9.60229 -9.39679 -9.35000 -9.20356 -8.94174 -7.44832 -6.94555 -6.67926 -4.36241 0.29643 0.71566 2.35285 2.38540 2.74759 2.87418 3.10304 3.14924 3.19012 3.28648 3.37277 3.62037 3.76997 3.97863 4.45034 4.45735 4.66267 4.70262 4.78415 5.03343 5.23996 5.50430 5.68672 5.84387 5.84732 5.90242 6.19627 6.31563 6.33968 6.66664 6.95994 7.00096 7.05594 7.20096 7.25272 7.50080 7.68074 7.92752 8.06493 8.09796 8.22168 8.55292 8.67273 8.92857 8.95872 10.25622 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.003463 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.043155 B = 8083.699860 C = 9229.984533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.257 3.743 3 C -0.036 4.036 4 C -0.052 4.052 5 C -0.125 4.125 6 C -0.059 4.059 7 C -0.122 4.122 8 C 0.544 3.456 9 O -0.505 6.505 10 N -0.660 5.660 11 C 0.147 3.853 12 C -0.257 4.257 13 C -0.094 4.094 14 C -0.166 4.166 15 C 0.119 3.881 16 C -0.457 4.457 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.800 5.800 20 Si 0.911 3.089 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.207 4.207 25 C -0.013 4.013 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.397 0.603 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.279 0.721 34 H 0.107 0.893 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 1.875 -16.823 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.059 4.059 3 C -0.040 4.040 4 C -0.073 4.073 5 C -0.143 4.143 6 C -0.079 4.079 7 C -0.125 4.125 8 C 0.331 3.669 9 O -0.380 6.380 10 N -0.304 5.304 11 C 0.056 3.944 12 C -0.279 4.279 13 C -0.113 4.113 14 C -0.186 4.186 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.426 5.426 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.228 4.228 25 C -0.035 4.035 26 H 0.154 0.846 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.233 0.767 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.804 1.609 -15.888 16.416 hybrid contribution 0.523 0.227 0.277 0.634 sum -3.281 1.837 -15.611 16.058 Atomic orbital electron populations 1.81264 1.11970 1.08663 1.07065 1.25579 0.92515 0.93801 0.93959 1.15878 0.84552 1.08598 0.94958 1.21349 0.94487 0.94859 0.96599 1.21042 0.93493 1.01218 0.98591 1.21638 1.00629 0.94004 0.91598 1.20008 0.93767 1.04764 0.94009 1.18138 0.82438 0.78094 0.88264 1.90878 1.68286 1.46784 1.32022 1.43316 1.05561 1.72399 1.09086 1.17396 0.92635 0.99622 0.84766 1.20048 0.98608 1.11194 0.98022 1.20487 0.98116 0.99731 0.92963 1.21431 0.96710 1.03288 0.97163 1.17505 0.89915 0.89557 0.91460 1.19562 1.26371 1.12769 0.90014 0.90506 1.25881 0.93152 0.94275 1.01008 1.69796 1.31366 1.14837 1.26624 0.86256 0.78840 0.80945 0.80413 1.19590 1.20118 1.18501 1.20989 1.01140 1.07724 0.92940 1.21352 0.92980 0.91591 0.97543 0.84566 0.84179 0.84640 0.76735 0.89203 0.88945 0.86027 0.90994 0.87501 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.52 18.54 41.84 0.78 -4.74 16 2 C 0.26 2.83 15.32 -22.48 -0.34 2.49 16 3 C -0.04 -0.34 5.73 -106.99 -0.61 -0.95 16 4 C -0.05 -0.34 9.75 -39.09 -0.38 -0.72 16 5 C -0.13 -0.73 10.02 -39.70 -0.40 -1.13 16 6 C -0.06 -0.47 9.53 -39.09 -0.37 -0.84 16 7 C -0.12 -1.44 5.87 -105.02 -0.62 -2.05 16 8 C 0.54 9.14 7.50 -12.34 -0.09 9.05 16 9 O -0.50 -10.94 14.05 5.31 0.07 -10.86 16 10 N -0.66 -10.83 5.28 -10.77 -0.06 -10.89 16 11 C 0.15 3.18 6.26 -83.79 -0.52 2.65 16 12 C -0.26 -5.40 9.97 -39.09 -0.39 -5.79 16 13 C -0.09 -2.12 10.01 -39.69 -0.40 -2.52 16 14 C -0.17 -4.27 8.66 -38.84 -0.34 -4.61 16 15 C 0.12 3.20 5.55 -106.85 -0.59 2.60 16 16 C -0.46 -12.39 9.06 -37.74 -0.34 -12.73 16 17 H 0.08 2.02 7.87 -52.48 -0.41 1.61 16 18 C 0.07 1.88 5.25 -17.35 -0.09 1.78 16 19 N -0.80 -20.96 10.81 55.55 0.60 -20.36 16 20 Si 0.91 19.07 29.57 -169.99 -5.03 14.04 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.21 -5.19 8.39 -38.68 -0.32 -5.52 16 25 C -0.01 -0.15 9.30 -38.75 -0.36 -0.51 16 26 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 27 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 28 H 0.14 0.78 6.40 -52.49 -0.34 0.44 16 29 H 0.40 4.70 6.86 -40.82 -0.28 4.42 16 30 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 32 H 0.12 3.22 6.18 -52.49 -0.32 2.90 16 33 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 34 H 0.11 2.76 6.44 -52.48 -0.34 2.42 16 35 H 0.15 1.83 7.65 -52.49 -0.40 1.43 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -32.07 317.67 -7.94 -40.01 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -2.92 Total: 6.81 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -6.18 Total: -18.80 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 1.32 Total: -35.99 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.07 -7.94 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313530402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.120 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds