Wall clock time and date at job start Tue Mar 31 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39755 * 120.08207 * 98.41961 * 3 2 1 5 5 C 1.38046 * 120.14392 * 179.71211 * 4 3 2 6 6 C 1.38104 * 120.30589 * 0.56135 * 5 4 3 7 7 C 1.39675 * 120.15383 * 359.71515 * 6 5 4 8 8 C 1.47833 * 120.07079 * 180.02562 * 7 6 5 9 9 O 1.21559 * 119.99860 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99806 * 359.97322 * 8 7 6 11 11 C 1.39864 * 119.99826 * 174.86922 * 10 8 7 12 12 C 1.39305 * 119.94916 * 146.35699 * 11 10 8 13 13 C 1.38485 * 120.42343 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32881 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.88334 * 359.97438 * 14 13 12 16 16 C 1.41414 * 120.20476 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99927 * 151.78940 * 16 15 14 18 18 C 1.39930 * 119.99843 * 331.78026 * 16 15 14 19 19 N 1.30825 * 120.00312 * 348.99686 * 18 16 15 20 20 Si 1.86802 * 119.99664 * 168.99779 * 18 16 15 21 21 H 1.48495 * 109.47348 * 94.99420 * 20 18 16 22 22 H 1.48499 * 109.46941 * 214.99419 * 20 18 16 23 23 H 1.48505 * 109.47342 * 334.99086 * 20 18 16 24 24 C 1.38263 * 119.94837 * 326.07862 * 11 10 8 25 25 C 1.39346 * 119.85762 * 0.02562 * 7 6 5 26 26 H 1.08007 * 119.92648 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.84740 * 180.25390 * 5 4 3 28 28 H 1.08000 * 119.92290 * 179.69619 * 6 5 4 29 29 H 0.96999 * 120.00161 * 354.86909 * 10 8 7 30 30 H 1.08001 * 119.78792 * 0.02562 * 12 11 10 31 31 H 1.08003 * 119.83641 * 180.02562 * 13 12 11 32 32 H 1.08000 * 120.05977 * 179.97438 * 14 13 12 33 33 H 0.97000 * 120.00282 * 179.97438 * 19 18 16 34 34 H 1.08005 * 120.16113 * 359.97438 * 24 11 10 35 35 H 1.08001 * 120.15285 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.1780 -1.1963 5 6 4.6488 0.1848 -1.1969 6 6 5.3471 0.0051 -0.0190 7 6 4.6599 -0.1791 1.1830 8 6 5.4093 -0.3707 2.4428 9 8 4.8098 -0.5304 3.4882 10 7 6.7569 -0.3685 2.4322 11 6 7.4658 -0.4420 3.6357 12 6 8.6853 -1.1135 3.6846 13 6 9.3956 -1.1919 4.8708 14 6 8.9035 -0.6068 6.0159 15 6 7.6727 0.0751 5.9816 16 6 7.1611 0.6790 7.1536 17 1 6.5160 1.5420 7.0789 18 6 7.4905 0.1583 8.4099 19 7 8.0875 -1.0023 8.5010 20 14 7.0778 1.1203 9.9570 21 1 5.7762 0.6533 10.4980 22 1 8.1409 0.9061 10.9715 23 1 6.9884 2.5665 9.6316 24 6 6.9579 0.1569 4.7737 25 6 3.2665 -0.1817 1.1920 26 1 2.7284 0.3143 -2.1217 27 1 5.1852 0.3264 -2.1235 28 1 6.4271 0.0066 -0.0274 29 1 7.2353 -0.3159 1.5900 30 1 9.0797 -1.5753 2.7915 31 1 10.3404 -1.7146 4.8979 32 1 9.4609 -0.6709 6.9387 33 1 8.3162 -1.3630 9.3719 34 1 6.0148 0.6821 4.7357 35 1 2.7303 -0.3232 2.1188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313530402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:44 Heat of formation + Delta-G solvation = 23.829940 kcal Electronic energy + Delta-G solvation = -20895.430396 eV Core-core repulsion = 17629.357694 eV Total energy + Delta-G solvation = -3266.072703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62170 -40.05181 -38.83125 -37.51955 -36.26163 -34.90091 -32.71682 -32.25273 -31.73261 -29.80208 -27.25873 -25.40022 -24.86864 -23.04881 -22.60586 -21.64136 -20.07713 -19.49520 -17.83903 -17.40429 -17.26571 -16.88080 -16.47101 -16.16846 -16.07821 -15.53733 -15.15752 -14.91553 -14.83947 -14.63379 -14.21149 -13.98715 -13.91197 -13.64301 -13.25663 -13.12402 -12.86194 -12.77709 -12.58404 -12.36243 -12.21147 -11.96060 -11.57693 -11.27016 -10.97835 -10.66329 -10.11930 -10.06564 -9.34984 -8.71401 -8.57223 -6.37828 -0.42416 -0.07886 0.93631 1.02341 1.36163 1.47186 1.49788 1.51295 1.65725 2.12399 2.13438 2.22598 2.75416 2.76842 2.88574 3.58381 3.74670 3.83523 4.01997 4.06546 4.35114 4.48081 4.57383 4.65335 4.85561 5.02921 5.11063 5.11786 5.14117 5.22527 5.25857 5.26697 5.35031 5.69483 5.77566 5.86446 6.09436 6.12663 6.34373 6.36084 6.61089 6.70488 6.95295 7.01669 7.27310 8.37687 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.003463 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.043155 B = 8083.699860 C = 9229.984533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.278 3.722 3 C -0.045 4.045 4 C -0.028 4.028 5 C -0.107 4.107 6 C -0.043 4.043 7 C -0.144 4.144 8 C 0.542 3.458 9 O -0.567 6.567 10 N -0.646 5.646 11 C 0.155 3.845 12 C -0.241 4.241 13 C -0.094 4.094 14 C -0.193 4.193 15 C 0.086 3.914 16 C -0.503 4.503 17 H 0.064 0.936 18 C 0.033 3.967 19 N -0.832 5.832 20 Si 0.983 3.017 21 H -0.268 1.268 22 H -0.259 1.259 23 H -0.260 1.260 24 C -0.233 4.233 25 C -0.026 4.026 26 H 0.171 0.829 27 H 0.188 0.812 28 H 0.164 0.836 29 H 0.424 0.576 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.287 0.713 34 H 0.084 0.916 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 1.819 -20.713 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.036 4.036 3 C -0.048 4.048 4 C -0.048 4.048 5 C -0.124 4.124 6 C -0.062 4.062 7 C -0.147 4.147 8 C 0.332 3.668 9 O -0.446 6.446 10 N -0.293 5.293 11 C 0.062 3.938 12 C -0.262 4.262 13 C -0.112 4.112 14 C -0.213 4.213 15 C 0.084 3.916 16 C -0.533 4.533 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.459 5.459 20 Si 0.804 3.196 21 H -0.193 1.193 22 H -0.183 1.183 23 H -0.183 1.183 24 C -0.255 4.255 25 C -0.048 4.048 26 H 0.189 0.811 27 H 0.206 0.794 28 H 0.182 0.818 29 H 0.264 0.736 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.279 1.552 -19.850 20.041 hybrid contribution 0.072 0.197 1.216 1.234 sum -2.207 1.749 -18.634 18.846 Atomic orbital electron populations 1.81280 1.13332 1.10545 1.08532 1.25840 0.92757 0.92420 0.92611 1.15864 0.83442 1.10101 0.95417 1.21828 0.95156 0.91440 0.96360 1.21543 0.92988 0.98550 0.99313 1.21972 1.02064 0.91721 0.90434 1.19563 0.93321 1.08763 0.93053 1.18969 0.82342 0.76100 0.89377 1.90855 1.69400 1.49450 1.34898 1.43142 1.05598 1.72034 1.08508 1.17460 0.92977 0.97749 0.85601 1.20529 0.97448 1.09161 0.99096 1.20878 0.99295 0.98646 0.92407 1.21390 0.96712 1.05168 0.98012 1.17837 0.90934 0.90618 0.92231 1.19771 1.28174 1.13649 0.91715 0.91730 1.26699 0.92679 0.95021 1.03674 1.69847 1.32273 1.15955 1.27791 0.85185 0.78898 0.79236 0.76301 1.19320 1.18346 1.18344 1.20960 1.00711 1.09416 0.94384 1.21161 0.93203 0.92908 0.97552 0.81134 0.79434 0.81836 0.73630 0.84368 0.85733 0.87693 0.90255 0.89756 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.34 18.54 19.00 0.35 -11.98 16 2 C 0.28 5.98 15.32 88.33 1.35 7.33 16 3 C -0.04 -0.75 5.73 -21.40 -0.12 -0.87 16 4 C -0.03 -0.22 9.75 22.59 0.22 0.00 16 5 C -0.11 -0.57 10.02 22.19 0.22 -0.35 16 6 C -0.04 -0.48 9.53 22.59 0.22 -0.26 16 7 C -0.14 -3.20 5.87 -20.12 -0.12 -3.32 16 8 C 0.54 18.42 7.50 86.78 0.65 19.07 16 9 O -0.57 -26.30 14.05 -3.90 -0.05 -26.36 16 10 N -0.65 -20.25 5.28 -306.25 -1.62 -21.87 16 11 C 0.16 6.64 6.26 38.12 0.24 6.88 16 12 C -0.24 -9.52 9.97 22.59 0.23 -9.29 16 13 C -0.09 -4.12 10.01 22.20 0.22 -3.90 16 14 C -0.19 -10.25 8.66 22.75 0.20 -10.06 16 15 C 0.09 4.94 5.55 -21.31 -0.12 4.82 16 16 C -0.50 -29.24 9.06 23.46 0.21 -29.03 16 17 H 0.06 3.72 7.87 -2.91 -0.02 3.69 16 18 C 0.03 1.74 5.25 85.25 0.45 2.19 16 19 N -0.83 -45.48 10.81 21.82 0.24 -45.25 16 20 Si 0.98 40.71 29.57 68.60 2.03 42.74 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 C -0.23 -12.35 8.39 22.85 0.19 -12.16 16 25 C -0.03 -0.60 9.30 22.81 0.21 -0.39 16 26 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 27 H 0.19 -0.54 8.06 -2.91 -0.02 -0.57 16 28 H 0.16 0.88 6.40 -2.91 -0.02 0.86 16 29 H 0.42 8.39 6.86 -92.71 -0.64 7.75 16 30 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 32 H 0.11 5.83 6.18 -2.91 -0.02 5.82 16 33 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 34 H 0.08 4.74 6.44 -2.91 -0.02 4.73 16 35 H 0.12 3.32 7.65 -2.91 -0.02 3.30 16 Total: -1.00 -79.07 317.67 5.72 -73.35 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.52 Total: 18.70 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 4.25 Total: -29.33 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.03 Total: -79.10 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -79.07 5.72 -73.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313530402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.178 kcal (2) G-P(sol) polarization free energy of solvation -79.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds