Wall clock time and date at job start Tue Mar 31 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00136 * 2 1 4 4 N 1.46504 * 109.47026 * 124.99795 * 3 2 1 5 5 C 1.34771 * 119.99521 * 269.99474 * 4 3 2 6 6 O 1.21860 * 119.99981 * 179.97438 * 5 4 3 7 7 C 1.41237 * 120.00593 * 0.02562 * 5 4 3 8 8 H 1.08000 * 119.99549 * 354.77475 * 7 5 4 9 9 C 1.40157 * 120.00485 * 174.77808 * 7 5 4 10 10 N 1.30627 * 119.99765 * 6.36052 * 9 7 5 11 11 Si 1.86794 * 120.00113 * 186.36067 * 9 7 5 12 12 H 1.48503 * 109.47059 * 94.98474 * 11 9 7 13 13 H 1.48505 * 109.46896 * 214.98351 * 11 9 7 14 14 H 1.48492 * 109.47475 * 334.98303 * 11 9 7 15 15 C 1.37915 * 120.00036 * 90.00130 * 4 3 2 16 16 N 1.29888 * 125.45925 * 359.97438 * 15 4 3 17 17 C 1.32178 * 117.97830 * 179.97438 * 16 15 4 18 18 C 1.35316 * 114.16425 * 0.02562 * 17 16 15 19 19 S 1.75969 * 108.89525 * 359.97438 * 18 17 16 20 20 C 1.51084 * 125.19531 * 179.71670 * 18 17 16 21 21 C 1.53115 * 108.68078 * 344.35071 * 20 18 17 22 22 C 1.53136 * 109.08215 * 49.05551 * 21 20 18 23 23 C 1.52338 * 123.46600 * 180.02562 * 17 16 15 24 24 H 1.08003 * 120.00279 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99948 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99948 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47232 * 4.99605 * 3 2 1 28 28 H 1.08998 * 109.46961 * 244.99551 * 3 2 1 29 29 H 0.96999 * 119.99807 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.61536 * 104.01464 * 20 18 17 31 31 H 1.08998 * 109.61309 * 224.53287 * 20 18 17 32 32 H 1.09008 * 109.38221 * 289.24132 * 21 20 18 33 33 H 1.09005 * 109.60796 * 169.00848 * 21 20 18 34 34 H 1.08995 * 109.47813 * 169.47533 * 22 21 20 35 35 H 1.08998 * 109.47199 * 49.46214 * 22 21 20 36 36 H 1.09001 * 109.58211 * 282.12985 * 23 17 16 37 37 H 1.09003 * 109.58542 * 42.40821 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5936 1.8224 2.3213 6 8 3.3671 1.8443 3.2626 7 6 1.2773 2.3101 2.4775 8 1 0.6183 2.3685 1.6239 9 6 0.8264 2.7183 3.7403 10 7 1.6578 2.7657 4.7467 11 14 -0.9633 3.1946 3.9839 12 1 -1.7242 2.0212 4.4832 13 1 -1.0513 4.2990 4.9728 14 1 -1.5370 3.6424 2.6896 15 6 4.2789 0.8553 0.9790 16 7 4.7745 0.3610 -0.1152 17 6 6.0295 -0.0533 -0.0957 18 6 6.6446 0.0989 1.0999 19 16 5.5109 0.8197 2.2364 20 6 8.0716 -0.2953 1.4014 21 6 8.5672 -1.2286 0.2933 22 6 8.2456 -0.6047 -1.0677 23 6 6.7353 -0.6521 -1.3057 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4025 -0.9313 29 1 1.3458 3.0485 5.6205 30 1 8.6983 0.5960 1.4342 31 1 8.1139 -0.8108 2.3608 32 1 8.0653 -2.1923 0.3807 33 1 9.6445 -1.3668 0.3861 34 1 8.7549 -1.1634 -1.8530 35 1 8.5834 0.4315 -1.0814 36 1 6.4184 -1.6865 -1.4387 37 1 6.4853 -0.0760 -2.1967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331062326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:19 Heat of formation + Delta-G solvation = 1.076974 kcal Electronic energy + Delta-G solvation = -21060.089430 eV Core-core repulsion = 17928.474036 eV Total energy + Delta-G solvation = -3131.615394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09772 -40.10309 -37.39343 -36.36407 -34.98101 -33.70076 -31.65879 -30.21449 -28.71902 -27.38314 -25.05413 -24.37741 -22.64826 -21.47585 -20.85108 -19.59548 -18.88520 -18.23641 -17.74539 -17.04831 -16.57907 -16.10393 -15.78594 -15.42531 -15.16291 -14.72905 -14.56308 -14.44959 -14.06262 -13.91421 -13.62170 -13.32850 -13.26459 -12.92149 -12.73705 -12.60451 -12.35516 -12.07495 -12.03436 -11.70484 -11.62338 -11.24584 -11.05080 -10.71313 -10.54487 -10.25565 -9.92352 -9.88302 -8.57739 -8.49618 -7.10036 0.03774 0.39548 1.28444 1.36129 1.37355 1.41679 1.56923 1.90681 2.12461 2.35729 2.41252 3.46151 3.52909 3.96115 4.04364 4.04915 4.16710 4.21775 4.36382 4.45244 4.58084 4.65780 4.71354 4.77803 4.93290 5.01491 5.04032 5.09558 5.17149 5.20696 5.29490 5.45411 5.48086 5.62036 5.71189 5.85698 5.90922 6.03649 6.63618 6.81742 7.16621 8.11026 8.42329 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.004946 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.523593 B = 5659.666691 C = 6597.917921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.178 4.178 3 C 0.152 3.848 4 N -0.528 5.528 5 C 0.515 3.485 6 O -0.590 6.590 7 C -0.534 4.534 8 H 0.103 0.897 9 C 0.035 3.965 10 N -0.790 5.790 11 Si 0.998 3.002 12 H -0.262 1.262 13 H -0.271 1.271 14 H -0.240 1.240 15 C 0.299 3.701 16 N -0.550 5.550 17 C 0.071 3.929 18 C -0.305 4.305 19 S 0.100 5.900 20 C -0.030 4.030 21 C -0.108 4.108 22 C -0.110 4.110 23 C -0.033 4.033 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.283 0.717 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -5.680 -10.150 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.198 4.198 3 C 0.028 3.972 4 N -0.255 5.255 5 C 0.328 3.672 6 O -0.478 6.478 7 C -0.568 4.568 8 H 0.121 0.879 9 C -0.185 4.185 10 N -0.417 5.417 11 Si 0.816 3.184 12 H -0.186 1.186 13 H -0.196 1.196 14 H -0.163 1.163 15 C -0.069 4.069 16 N -0.275 5.275 17 C -0.060 4.060 18 C -0.427 4.427 19 S 0.353 5.647 20 C -0.070 4.070 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.073 4.073 24 H 0.134 0.866 25 H 0.128 0.872 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.961 -5.252 -8.774 11.366 hybrid contribution -0.483 0.009 -0.074 0.489 sum 4.478 -5.243 -8.849 11.218 Atomic orbital electron populations 1.23996 0.94803 1.03158 0.97597 1.22996 0.96802 0.97509 1.02479 1.20757 0.91498 0.97152 0.87744 1.45597 1.06541 1.58960 1.14449 1.17695 0.90370 0.79831 0.79263 1.90586 1.55639 1.62575 1.38955 1.20464 0.96669 1.42508 0.97142 0.87909 1.27053 1.04792 0.92200 0.94416 1.70137 1.38354 1.31250 1.01983 0.84984 0.74734 0.78633 0.80065 1.18627 1.19588 1.16251 1.24196 0.92432 0.98065 0.92196 1.66037 1.14866 1.21445 1.25161 1.21197 0.87782 1.00483 0.96564 1.26804 1.03720 1.14209 0.97990 1.86121 1.03356 1.60884 1.14357 1.20106 0.87064 0.99934 0.99899 1.21572 1.02041 0.97790 0.93274 1.21535 0.93298 1.01871 0.98103 1.20469 0.94681 1.00217 0.91888 0.86618 0.87181 0.89225 0.88295 0.89640 0.90697 0.90396 0.91127 0.91856 0.88464 0.88166 0.92014 0.89798 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 14.32 67.78 0.97 -3.67 16 2 C -0.18 -6.37 9.85 25.65 0.25 -6.12 16 3 C 0.15 6.01 5.40 85.63 0.46 6.48 16 4 N -0.53 -25.99 2.63 -654.09 -1.72 -27.71 16 5 C 0.52 29.18 7.39 84.98 0.63 29.81 16 6 O -0.59 -37.43 12.38 -4.86 -0.06 -37.49 16 7 C -0.53 -27.96 8.58 23.47 0.20 -27.76 16 8 H 0.10 4.72 5.83 -2.91 -0.02 4.71 16 9 C 0.04 1.81 5.49 85.34 0.47 2.28 16 10 N -0.79 -44.84 11.74 21.86 0.26 -44.58 16 11 Si 1.00 37.20 29.56 68.60 2.03 39.23 16 12 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 13 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 14 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 15 C 0.30 14.48 7.85 179.50 1.41 15.89 16 16 N -0.55 -23.82 9.78 -183.24 -1.79 -25.61 16 17 C 0.07 2.63 6.75 42.36 0.29 2.92 16 18 C -0.31 -11.37 6.39 25.13 0.16 -11.20 16 19 S 0.10 4.70 20.51 -56.49 -1.16 3.54 16 20 C -0.03 -0.82 6.27 30.01 0.19 -0.63 16 21 C -0.11 -2.14 5.94 30.68 0.18 -1.96 16 22 C -0.11 -2.14 5.87 30.63 0.18 -1.96 16 23 C -0.03 -0.85 6.29 30.37 0.19 -0.66 16 24 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 25 H 0.11 2.98 7.84 -2.91 -0.02 2.96 16 26 H 0.09 3.38 8.06 -2.91 -0.02 3.36 16 27 H 0.10 3.72 5.67 -2.39 -0.01 3.71 16 28 H 0.09 3.23 7.63 -2.39 -0.02 3.21 16 29 H 0.28 14.43 8.29 -92.71 -0.77 13.67 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.29 8.11 -2.38 -0.02 1.27 16 33 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -71.28 320.74 4.21 -67.06 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 1.08 Total: 22.16 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.58 Total: 3.41 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -3.25 Total: -97.91 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.06 Total: -37.49 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.16 Total: 3.54 kcal Total: -71.28 4.21 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331062326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.141 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds