Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39782 * 120.07743 * 73.13006 * 3 2 1 5 5 C 1.37681 * 119.92513 * 180.02562 * 4 3 2 6 6 C 1.39148 * 120.07579 * 359.97438 * 5 4 3 7 7 N 1.39406 * 119.92267 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00002 * 144.37746 * 7 6 5 9 9 O 1.21606 * 119.99813 * 4.86843 * 8 7 6 10 10 C 1.47582 * 120.00394 * 184.86881 * 8 7 6 11 11 C 1.40040 * 119.89657 * 359.72663 * 10 8 7 12 12 C 1.36301 * 120.10558 * 179.71745 * 11 10 8 13 13 C 1.40896 * 119.89379 * 0.55498 * 12 11 10 14 14 C 1.41087 * 120.10348 * 179.69800 * 13 12 11 15 15 H 1.08002 * 120.00227 * 205.13085 * 14 13 12 16 16 C 1.40227 * 119.99872 * 25.13058 * 14 13 12 17 17 N 1.30645 * 120.00096 * 18.02734 * 16 14 13 18 18 Si 1.86807 * 119.99835 * 198.02180 * 16 14 13 19 19 H 1.48498 * 109.46792 * 94.98906 * 18 16 14 20 20 H 1.48506 * 109.46877 * 214.98188 * 18 16 14 21 21 H 1.48494 * 109.47004 * 334.98431 * 18 16 14 22 22 C 1.40905 * 119.79602 * 359.71739 * 13 12 11 23 23 C 1.36294 * 119.89365 * 0.02562 * 22 13 12 24 24 C 1.39142 * 120.15350 * 0.27691 * 6 5 4 25 25 C 1.37685 * 120.07454 * 359.44571 * 24 6 5 26 26 H 1.07999 * 120.03977 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.96437 * 179.97438 * 5 4 3 28 28 H 0.97003 * 120.00755 * 324.10398 * 7 6 5 29 29 H 1.08002 * 119.94653 * 359.97438 * 11 10 8 30 30 H 1.07998 * 120.05320 * 180.27209 * 12 11 10 31 31 H 0.97001 * 119.99825 * 179.97438 * 17 16 14 32 32 H 1.08000 * 120.05067 * 179.97438 * 22 13 12 33 33 H 1.08001 * 119.94955 * 179.97438 * 23 22 13 34 34 H 1.07997 * 119.96263 * 179.73059 * 24 6 5 35 35 H 1.07997 * 120.03689 * 180.25795 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2686 -0.3501 -1.1575 5 6 4.6454 -0.3489 -1.1539 6 6 5.3394 0.0014 0.0002 7 7 6.7334 0.0010 0.0005 8 6 7.4075 0.9270 0.7109 9 8 6.8028 1.7070 1.4214 10 6 8.8793 0.9945 0.6266 11 6 9.5740 0.0915 -0.1878 12 6 10.9329 0.1537 -0.2733 13 6 11.6396 1.1209 0.4684 14 6 13.0467 1.1851 0.3881 15 1 13.6156 1.6051 1.2045 16 6 13.7067 0.7036 -0.7516 17 7 13.0446 0.5264 -1.8638 18 14 15.5326 0.3157 -0.6796 19 1 15.7206 -1.1295 -0.3944 20 1 16.1611 0.6488 -1.9832 21 1 16.1673 1.1193 0.3958 22 6 10.9368 2.0236 1.2909 23 6 9.5775 1.9573 1.3660 24 6 4.6452 0.3460 1.1558 25 6 3.2683 0.3525 1.1575 26 1 2.7306 -0.6225 -2.0535 27 1 5.1874 -0.6202 -2.0478 28 1 7.2185 -0.6682 -0.5074 29 1 9.0317 -0.6527 -0.7523 30 1 11.4674 -0.5403 -0.9051 31 1 13.5012 0.1937 -2.6523 32 1 11.4744 2.7664 1.8616 33 1 9.0380 2.6485 1.9965 34 1 5.1869 0.6131 2.0510 35 1 2.7301 0.6241 2.0535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334305338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = 20.832265 kcal Electronic energy + Delta-G solvation = -20660.406573 eV Core-core repulsion = 17394.203881 eV Total energy + Delta-G solvation = -3266.202692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57764 -39.93384 -38.86456 -37.50136 -35.73353 -35.63341 -32.36525 -32.05874 -31.30312 -30.74631 -27.78404 -25.06886 -23.90302 -23.35783 -22.74416 -21.26287 -19.90319 -19.38314 -19.04315 -18.00857 -17.19044 -16.46999 -16.06251 -15.75109 -15.65672 -15.34331 -15.05466 -15.00034 -14.72010 -14.46076 -14.38010 -13.91725 -13.86280 -13.69230 -13.41160 -13.23214 -13.16519 -12.85024 -12.62251 -12.37263 -12.20846 -11.75278 -11.36290 -11.28907 -11.12421 -10.70103 -9.97230 -9.58639 -9.47514 -9.11172 -8.80311 -6.48430 -0.28088 0.42701 0.43895 1.17346 1.39700 1.43608 1.54828 1.63507 1.84962 2.11665 2.17251 2.23472 2.75156 2.91798 2.94765 3.69144 3.88456 3.97505 4.16421 4.31499 4.32918 4.45685 4.52427 4.62452 4.94216 5.00331 5.03617 5.10048 5.15311 5.29127 5.33831 5.39229 5.47391 5.59752 5.81626 5.91658 5.96639 6.00075 6.23547 6.46922 6.53213 6.56394 6.77252 6.88755 7.29837 8.14724 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.044325 B = 0.002703 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.552219 B =10355.845053 C =10875.262637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.287 3.713 3 C -0.066 4.066 4 C -0.035 4.035 5 C -0.145 4.145 6 C 0.175 3.825 7 N -0.668 5.668 8 C 0.575 3.425 9 O -0.576 6.576 10 C -0.295 4.295 11 C -0.051 4.051 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.470 4.470 15 H 0.085 0.915 16 C 0.039 3.961 17 N -0.794 5.794 18 Si 0.986 3.014 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.254 4.254 23 C -0.028 4.028 24 C -0.146 4.146 25 C -0.044 4.044 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.423 0.577 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.298 0.702 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.445 -5.776 -2.312 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.027 4.027 3 C -0.070 4.070 4 C -0.055 4.055 5 C -0.166 4.166 6 C 0.078 3.922 7 N -0.313 5.313 8 C 0.371 3.629 9 O -0.458 6.458 10 C -0.299 4.299 11 C -0.070 4.070 12 C -0.218 4.218 13 C 0.099 3.901 14 C -0.497 4.497 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.417 5.417 18 Si 0.806 3.194 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.182 1.182 22 C -0.274 4.274 23 C -0.047 4.047 24 C -0.167 4.167 25 C -0.065 4.065 26 H 0.182 0.818 27 H 0.181 0.819 28 H 0.263 0.737 29 H 0.148 0.852 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.145 0.855 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.526 -5.280 -2.092 11.090 hybrid contribution 1.570 -0.087 -0.049 1.573 sum -7.957 -5.367 -2.141 9.833 Atomic orbital electron populations 1.81265 1.13250 1.11165 1.09036 1.25778 0.92565 0.92044 0.92320 1.16024 0.83434 1.10544 0.96996 1.21200 0.93118 0.94282 0.96944 1.21119 0.94110 1.04469 0.96858 1.18347 0.82954 0.96625 0.94252 1.43339 1.04541 1.32777 1.50620 1.18477 0.87764 0.78860 0.77790 1.90649 1.70462 1.43349 1.41306 1.19012 0.90553 1.07687 1.12646 1.20760 0.94242 0.96447 0.95503 1.21005 0.93777 1.01451 1.05519 1.18167 0.94040 0.88788 0.89132 1.20143 0.92365 1.34435 1.02745 0.89725 1.26891 1.05985 0.91610 0.93579 1.69747 1.41146 1.29330 1.01486 0.85120 0.75295 0.79821 0.79205 1.18300 1.19016 1.18247 1.20858 0.93784 1.03575 1.09138 1.20517 0.93757 0.95317 0.95149 1.21212 0.94140 1.03028 0.98289 1.21117 0.92947 0.94993 0.97431 0.81813 0.81929 0.73670 0.85238 0.86839 0.89083 0.87912 0.87640 0.85454 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.17 18.54 19.00 0.35 -11.82 16 2 C 0.29 6.07 15.33 88.33 1.35 7.43 16 3 C -0.07 -1.20 5.74 -21.29 -0.12 -1.32 16 4 C -0.03 -0.51 9.75 22.51 0.22 -0.29 16 5 C -0.15 -2.42 9.95 22.36 0.22 -2.20 16 6 C 0.17 4.18 6.28 38.37 0.24 4.42 16 7 N -0.67 -18.04 5.25 -306.26 -1.61 -19.65 16 8 C 0.58 21.02 7.60 86.71 0.66 21.68 16 9 O -0.58 -23.80 13.78 -4.05 -0.06 -23.85 16 10 C -0.29 -12.02 5.89 -19.94 -0.12 -12.13 16 11 C -0.05 -1.98 9.47 22.26 0.21 -1.77 16 12 C -0.20 -9.05 8.63 22.47 0.19 -8.86 16 13 C 0.10 4.99 5.57 -21.28 -0.12 4.87 16 14 C -0.47 -22.59 9.04 23.45 0.21 -22.38 16 15 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.72 5.13 85.35 0.44 2.16 16 17 N -0.79 -35.93 11.00 21.87 0.24 -35.69 16 18 Si 0.99 33.11 29.60 68.60 2.03 35.14 16 19 H -0.26 -8.39 7.11 99.48 0.71 -7.69 16 20 H -0.27 -8.50 7.11 99.48 0.71 -7.79 16 21 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 22 C -0.25 -11.84 9.73 22.47 0.22 -11.63 16 23 C -0.03 -1.25 9.52 22.25 0.21 -1.03 16 24 C -0.15 -3.70 8.66 22.36 0.19 -3.50 16 25 C -0.04 -0.89 9.75 22.51 0.22 -0.67 16 26 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 27 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 28 H 0.42 9.13 6.84 -92.71 -0.63 8.50 16 29 H 0.13 3.86 6.38 -2.91 -0.02 3.84 16 30 H 0.11 5.27 6.20 -2.91 -0.02 5.25 16 31 H 0.30 11.92 8.29 -92.71 -0.77 11.16 16 32 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.11 4.50 7.63 -2.91 -0.02 4.48 16 34 H 0.13 3.84 6.25 -2.91 -0.02 3.82 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -59.05 317.24 5.72 -53.33 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.52 Total: 27.76 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 4.24 Total: -25.22 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.02 Total: -67.16 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 33.11 SS G_CDS: 2.03 Total: 35.14 kcal Total: -59.05 5.72 -53.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334305338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.162 kcal (2) G-P(sol) polarization free energy of solvation -59.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds