Wall clock time and date at job start Tue Mar 31 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39754 * 120.07878 * 158.38196 * 3 2 1 5 5 C 1.38058 * 120.14323 * 179.71621 * 4 3 2 6 6 C 1.38094 * 120.30385 * 0.56327 * 5 4 3 7 7 C 1.39682 * 120.15770 * 359.72075 * 6 5 4 8 8 C 1.47814 * 120.07233 * 179.97438 * 7 6 5 9 9 O 1.21567 * 119.99818 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00280 * 0.02562 * 8 7 6 11 11 C 1.39007 * 120.00160 * 175.80731 * 10 8 7 12 12 C 1.38681 * 120.28623 * 34.54741 * 11 10 8 13 13 C 1.38208 * 120.02901 * 180.02562 * 12 11 10 14 14 C 1.38876 * 120.62131 * 359.97438 * 13 12 11 15 15 C 1.36459 * 120.58679 * 0.02562 * 14 13 12 16 16 C 1.40746 * 119.93856 * 359.71308 * 15 14 13 17 17 C 1.41053 * 120.29733 * 180.27572 * 16 15 14 18 18 H 1.08007 * 120.00059 * 214.95118 * 17 16 15 19 19 C 1.39962 * 120.00377 * 34.96195 * 17 16 15 20 20 N 1.30851 * 119.99556 * 355.67624 * 19 17 16 21 21 Si 1.86798 * 120.00611 * 175.67970 * 19 17 16 22 22 H 1.48501 * 109.46862 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47553 * 119.99733 * 21 19 17 24 24 H 1.48500 * 109.47267 * 240.00221 * 21 19 17 25 25 C 1.39351 * 119.85348 * 359.97438 * 7 6 5 26 26 H 1.08000 * 119.93131 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.84652 * 180.26150 * 5 4 3 28 28 H 1.07999 * 119.91941 * 179.74029 * 6 5 4 29 29 H 0.96998 * 119.99629 * 355.80725 * 10 8 7 30 30 H 1.08001 * 119.98833 * 0.02632 * 12 11 10 31 31 H 1.07993 * 119.68899 * 179.97438 * 13 12 11 32 32 H 1.08001 * 119.71032 * 179.97438 * 14 13 12 33 33 H 1.07999 * 120.03026 * 180.02562 * 15 14 13 34 34 H 0.97003 * 120.00136 * 179.97438 * 20 19 17 35 35 H 1.08009 * 120.15528 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 1.1252 -0.4455 5 6 4.6485 1.1295 -0.4406 6 6 5.3472 0.0200 -0.0070 7 6 4.6605 -1.1130 0.4354 8 6 5.4102 -2.2997 0.8986 9 8 4.8112 -3.2852 1.2829 10 7 6.7579 -2.2891 0.8948 11 6 7.4630 -3.3702 1.4112 12 6 6.9682 -4.6583 1.2728 13 6 7.6732 -5.7292 1.7888 14 6 8.8793 -5.5304 2.4480 15 6 9.3895 -4.2738 2.5985 16 6 8.6943 -3.1664 2.0776 17 6 9.2176 -1.8647 2.2238 18 1 8.5506 -1.0276 2.3688 19 6 10.6011 -1.6577 2.1806 20 7 11.4130 -2.6798 2.0897 21 14 11.2887 0.0777 2.2529 22 1 10.1703 1.0495 2.3526 23 1 12.1693 0.2122 3.4410 24 1 12.0731 0.3510 1.0219 25 6 3.2670 -1.1221 0.4392 26 1 2.7278 1.9944 -0.7906 27 1 5.1846 2.0027 -0.7820 28 1 6.4272 0.0286 -0.0098 29 1 7.2359 -1.5272 0.5317 30 1 6.0314 -4.8247 0.7617 31 1 7.2826 -6.7299 1.6783 32 1 9.4179 -6.3778 2.8458 33 1 10.3284 -4.1296 3.1123 34 1 12.3719 -2.5364 2.0595 35 1 2.7310 -1.9957 0.7799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334362141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:56 Heat of formation + Delta-G solvation = 41.871679 kcal Electronic energy + Delta-G solvation = -21307.747046 eV Core-core repulsion = 18042.456692 eV Total energy + Delta-G solvation = -3265.290354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30711 -38.87225 -37.19832 -36.49471 -34.01489 -33.68862 -31.74343 -31.40112 -29.65420 -28.40586 -25.39525 -24.33517 -23.74802 -21.64398 -20.95054 -20.07495 -18.73777 -17.44756 -16.88882 -16.30466 -16.23277 -15.33827 -15.09892 -14.69663 -14.49156 -14.20450 -14.06033 -13.83226 -13.32209 -13.10757 -12.95330 -12.72654 -12.48287 -12.30532 -11.99425 -11.79671 -11.51308 -11.29926 -11.24350 -11.00930 -10.52816 -10.21520 -9.84797 -9.44721 -9.29672 -9.26661 -9.21234 -8.97022 -7.37027 -7.03734 -6.69417 -4.52138 0.42522 0.83731 2.43676 2.44614 2.69635 2.89687 2.99843 3.02541 3.13426 3.34837 3.52989 3.78911 3.84500 3.91435 4.57755 4.59566 4.62989 4.88332 4.95493 5.17906 5.39234 5.55209 5.63078 5.95499 6.01324 6.05484 6.27631 6.44278 6.45912 6.51835 6.87043 6.99408 7.12910 7.20814 7.26181 7.59223 7.65090 7.90307 8.03107 8.04838 8.31393 8.49380 8.72222 8.77400 8.92214 10.15878 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.004516 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.460442 B = 6199.358891 C = 7799.749270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.260 3.740 3 C -0.040 4.040 4 C -0.054 4.054 5 C -0.125 4.125 6 C -0.058 4.058 7 C -0.120 4.120 8 C 0.538 3.462 9 O -0.533 6.533 10 N -0.626 5.626 11 C 0.018 3.982 12 C -0.091 4.091 13 C -0.216 4.216 14 C -0.118 4.118 15 C -0.139 4.139 16 C 0.098 3.902 17 C -0.471 4.471 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.805 5.805 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.015 4.015 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.403 0.597 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.279 0.721 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 8.455 -5.100 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.056 4.056 3 C -0.044 4.044 4 C -0.075 4.075 5 C -0.143 4.143 6 C -0.077 4.077 7 C -0.123 4.123 8 C 0.325 3.675 9 O -0.412 6.412 10 N -0.268 5.268 11 C -0.076 4.076 12 C -0.111 4.111 13 C -0.235 4.235 14 C -0.137 4.137 15 C -0.159 4.159 16 C 0.095 3.905 17 C -0.502 4.502 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.432 5.432 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.037 4.037 26 H 0.153 0.847 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.240 0.760 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.090 0.910 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.545 7.733 -4.836 11.837 hybrid contribution 1.194 1.113 -0.145 1.639 sum -6.351 8.846 -4.982 11.975 Atomic orbital electron populations 1.81253 1.11995 1.07456 1.08761 1.25613 0.92537 0.93774 0.93636 1.15870 0.84443 0.96697 1.07377 1.21326 0.94481 0.96362 0.95307 1.21061 0.93440 0.98926 1.00850 1.21738 1.01013 0.91809 0.93177 1.20031 0.93684 0.95436 1.03158 1.18129 0.82626 0.87020 0.79727 1.90749 1.68695 1.33882 1.47881 1.42746 1.04835 1.20900 1.58294 1.17797 0.97893 0.85532 1.06330 1.20676 0.99030 0.91157 1.00244 1.20387 0.97913 0.96757 1.08486 1.20570 0.95787 0.96872 1.00423 1.21197 1.01485 0.91037 1.02219 1.17465 0.89908 0.94353 0.88788 1.19337 0.91653 0.93672 1.45516 0.90625 1.25862 0.97121 0.98836 0.92430 1.69768 1.04695 1.31518 1.37230 0.86197 0.79473 0.82035 0.78611 1.18542 1.19916 1.19917 1.21296 0.92970 0.96736 0.92656 0.84691 0.84190 0.84316 0.76032 0.87125 0.89061 0.89233 0.85112 0.91017 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.72 18.54 41.84 0.78 -4.95 16 2 C 0.26 3.00 15.32 -22.47 -0.34 2.66 16 3 C -0.04 -0.41 5.73 -106.99 -0.61 -1.02 16 4 C -0.05 -0.42 9.75 -39.08 -0.38 -0.80 16 5 C -0.12 -0.96 10.02 -39.70 -0.40 -1.36 16 6 C -0.06 -0.59 9.54 -39.09 -0.37 -0.96 16 7 C -0.12 -1.58 5.87 -105.03 -0.62 -2.20 16 8 C 0.54 9.59 7.61 -12.34 -0.09 9.49 16 9 O -0.53 -11.24 13.75 5.31 0.07 -11.17 16 10 N -0.63 -11.84 4.90 -10.34 -0.05 -11.89 16 11 C 0.02 0.41 6.34 -83.21 -0.53 -0.11 16 12 C -0.09 -2.10 8.68 -39.43 -0.34 -2.45 16 13 C -0.22 -4.85 10.04 -39.36 -0.39 -5.24 16 14 C -0.12 -2.69 9.97 -39.99 -0.40 -3.09 16 15 C -0.14 -3.46 8.61 -39.28 -0.34 -3.79 16 16 C 0.10 2.43 5.56 -106.65 -0.59 1.83 16 17 C -0.47 -11.15 8.22 -37.87 -0.31 -11.46 16 18 H 0.08 1.69 7.63 -52.48 -0.40 1.29 16 19 C 0.07 1.69 5.42 -17.32 -0.09 1.59 16 20 N -0.81 -19.37 10.62 55.55 0.59 -18.78 16 21 Si 0.91 17.02 29.56 -169.99 -5.03 11.99 16 22 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.02 -0.18 9.30 -38.75 -0.36 -0.54 16 26 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 27 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 28 H 0.14 1.27 6.40 -52.49 -0.34 0.94 16 29 H 0.40 6.60 6.13 -40.82 -0.25 6.35 16 30 H 0.11 2.51 6.19 -52.49 -0.32 2.19 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.13 3.35 6.15 -52.49 -0.32 3.02 16 34 H 0.28 6.14 8.30 -40.82 -0.34 5.81 16 35 H 0.15 1.84 7.65 -52.48 -0.40 1.44 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -28.89 315.32 -7.93 -36.82 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -2.86 Total: 10.69 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -6.18 Total: -17.46 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 1.31 Total: -35.62 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.89 -7.93 -36.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334362141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.688 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds