Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39754 * 120.07878 * 158.38196 * 3 2 1 5 5 C 1.38058 * 120.14323 * 179.71621 * 4 3 2 6 6 C 1.38094 * 120.30385 * 0.56327 * 5 4 3 7 7 C 1.39682 * 120.15770 * 359.72075 * 6 5 4 8 8 C 1.47814 * 120.07233 * 179.97438 * 7 6 5 9 9 O 1.21567 * 119.99818 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00280 * 0.02562 * 8 7 6 11 11 C 1.39007 * 120.00160 * 175.80731 * 10 8 7 12 12 C 1.38681 * 120.28623 * 34.54741 * 11 10 8 13 13 C 1.38208 * 120.02901 * 180.02562 * 12 11 10 14 14 C 1.38876 * 120.62131 * 359.97438 * 13 12 11 15 15 C 1.36459 * 120.58679 * 0.02562 * 14 13 12 16 16 C 1.40746 * 119.93856 * 359.71308 * 15 14 13 17 17 C 1.41053 * 120.29733 * 180.27572 * 16 15 14 18 18 H 1.08007 * 120.00059 * 214.95118 * 17 16 15 19 19 C 1.39962 * 120.00377 * 34.96195 * 17 16 15 20 20 N 1.30851 * 119.99556 * 355.67624 * 19 17 16 21 21 Si 1.86798 * 120.00611 * 175.67970 * 19 17 16 22 22 H 1.48501 * 109.46862 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47553 * 119.99733 * 21 19 17 24 24 H 1.48500 * 109.47267 * 240.00221 * 21 19 17 25 25 C 1.39351 * 119.85348 * 359.97438 * 7 6 5 26 26 H 1.08000 * 119.93131 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.84652 * 180.26150 * 5 4 3 28 28 H 1.07999 * 119.91941 * 179.74029 * 6 5 4 29 29 H 0.96998 * 119.99629 * 355.80725 * 10 8 7 30 30 H 1.08001 * 119.98833 * 0.02632 * 12 11 10 31 31 H 1.07993 * 119.68899 * 179.97438 * 13 12 11 32 32 H 1.08001 * 119.71032 * 179.97438 * 14 13 12 33 33 H 1.07999 * 120.03026 * 180.02562 * 15 14 13 34 34 H 0.97003 * 120.00136 * 179.97438 * 20 19 17 35 35 H 1.08009 * 120.15528 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 1.1252 -0.4455 5 6 4.6485 1.1295 -0.4406 6 6 5.3472 0.0200 -0.0070 7 6 4.6605 -1.1130 0.4354 8 6 5.4102 -2.2997 0.8986 9 8 4.8112 -3.2852 1.2829 10 7 6.7579 -2.2891 0.8948 11 6 7.4630 -3.3702 1.4112 12 6 6.9682 -4.6583 1.2728 13 6 7.6732 -5.7292 1.7888 14 6 8.8793 -5.5304 2.4480 15 6 9.3895 -4.2738 2.5985 16 6 8.6943 -3.1664 2.0776 17 6 9.2176 -1.8647 2.2238 18 1 8.5506 -1.0276 2.3688 19 6 10.6011 -1.6577 2.1806 20 7 11.4130 -2.6798 2.0897 21 14 11.2887 0.0777 2.2529 22 1 10.1703 1.0495 2.3526 23 1 12.1693 0.2122 3.4410 24 1 12.0731 0.3510 1.0219 25 6 3.2670 -1.1221 0.4392 26 1 2.7278 1.9944 -0.7906 27 1 5.1846 2.0027 -0.7820 28 1 6.4272 0.0286 -0.0098 29 1 7.2359 -1.5272 0.5317 30 1 6.0314 -4.8247 0.7617 31 1 7.2826 -6.7299 1.6783 32 1 9.4179 -6.3778 2.8458 33 1 10.3284 -4.1296 3.1123 34 1 12.3719 -2.5364 2.0595 35 1 2.7310 -1.9957 0.7799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334362141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = 27.019456 kcal Electronic energy + Delta-G solvation = -21308.391087 eV Core-core repulsion = 18042.456692 eV Total energy + Delta-G solvation = -3265.934395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55934 -40.05681 -38.79348 -37.48784 -35.58172 -35.44304 -32.73794 -32.23262 -31.44681 -30.05464 -27.13189 -25.32931 -24.80598 -23.18012 -22.42093 -21.49391 -19.99754 -19.15121 -18.27818 -17.53450 -17.20244 -16.86360 -16.24622 -16.10782 -15.90140 -15.49927 -15.12078 -14.87030 -14.72718 -14.43962 -14.22225 -14.10096 -13.90305 -13.60126 -13.25114 -13.02594 -12.78885 -12.73760 -12.69965 -12.34634 -12.06694 -11.94164 -11.54765 -11.07417 -10.96662 -10.60924 -10.09694 -10.05137 -9.21309 -8.78008 -8.41608 -6.33200 -0.40622 -0.04705 0.91155 1.10794 1.48574 1.52026 1.56753 1.62431 1.66631 2.16110 2.28300 2.33758 2.79379 2.84485 2.90721 3.65508 3.73474 3.85963 4.04763 4.09037 4.37208 4.50482 4.59318 4.65248 4.78545 4.87676 5.12638 5.16725 5.23065 5.23920 5.29982 5.38333 5.46171 5.70965 5.82170 5.88835 6.16741 6.20482 6.29015 6.36327 6.66907 6.76257 6.99154 7.03671 7.35715 8.46245 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.004516 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.460442 B = 6199.358891 C = 7799.749270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.281 3.719 3 C -0.044 4.044 4 C -0.028 4.028 5 C -0.109 4.109 6 C -0.052 4.052 7 C -0.142 4.142 8 C 0.538 3.462 9 O -0.574 6.574 10 N -0.626 5.626 11 C 0.016 3.984 12 C -0.107 4.107 13 C -0.221 4.221 14 C -0.123 4.123 15 C -0.165 4.165 16 C 0.071 3.929 17 C -0.488 4.488 18 H 0.085 0.915 19 C 0.032 3.968 20 N -0.838 5.838 21 Si 0.986 3.014 22 H -0.246 1.246 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.021 4.021 26 H 0.172 0.828 27 H 0.182 0.818 28 H 0.149 0.851 29 H 0.414 0.586 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.284 0.716 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 11.805 -6.253 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.033 4.033 3 C -0.047 4.047 4 C -0.048 4.048 5 C -0.126 4.126 6 C -0.071 4.071 7 C -0.146 4.146 8 C 0.328 3.672 9 O -0.456 6.456 10 N -0.269 5.269 11 C -0.078 4.078 12 C -0.127 4.127 13 C -0.241 4.241 14 C -0.142 4.142 15 C -0.185 4.185 16 C 0.067 3.933 17 C -0.519 4.519 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.466 5.466 21 Si 0.807 3.193 22 H -0.169 1.169 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.043 4.043 26 H 0.189 0.811 27 H 0.200 0.800 28 H 0.167 0.833 29 H 0.253 0.747 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.095 0.905 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.570 11.095 -6.004 14.712 hybrid contribution 1.147 0.069 0.183 1.163 sum -6.423 11.164 -5.821 14.134 Atomic orbital electron populations 1.81279 1.13172 1.08759 1.10299 1.25739 0.92594 0.92589 0.92426 1.15841 0.83559 0.97070 1.08254 1.21785 0.94745 0.96045 0.92271 1.21482 0.93288 0.98966 0.98887 1.21939 1.01684 0.91361 0.92127 1.19613 0.93621 0.94853 1.06466 1.18840 0.82097 0.87936 0.78308 1.90713 1.69299 1.35951 1.49609 1.42710 1.05333 1.20380 1.58480 1.17926 0.97650 0.86707 1.05549 1.20851 0.99196 0.91762 1.00883 1.20678 0.97678 0.97788 1.07922 1.20784 0.96080 0.97009 1.00331 1.21223 1.01582 0.92225 1.03478 1.17804 0.90808 0.95088 0.89606 1.19573 0.92554 0.93526 1.46198 0.89698 1.26769 0.96993 1.02959 0.91392 1.69862 1.05207 1.33836 1.37661 0.85080 0.78862 0.76990 0.78357 1.16878 1.20273 1.19329 1.21146 0.92675 0.97136 0.93295 0.81067 0.80025 0.83318 0.74686 0.87257 0.86811 0.87110 0.86598 0.90546 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.13 18.54 19.00 0.35 -11.77 16 2 C 0.28 6.06 15.32 88.33 1.35 7.41 16 3 C -0.04 -0.78 5.73 -21.40 -0.12 -0.90 16 4 C -0.03 -0.30 9.75 22.59 0.22 -0.08 16 5 C -0.11 -1.10 10.02 22.19 0.22 -0.88 16 6 C -0.05 -0.89 9.54 22.58 0.22 -0.68 16 7 C -0.14 -3.62 5.87 -20.13 -0.12 -3.74 16 8 C 0.54 19.50 7.61 86.78 0.66 20.16 16 9 O -0.57 -25.18 13.75 -3.93 -0.05 -25.24 16 10 N -0.63 -23.90 4.90 -304.90 -1.49 -25.39 16 11 C 0.02 0.76 6.34 38.91 0.25 1.01 16 12 C -0.11 -5.06 8.68 22.37 0.19 -4.87 16 13 C -0.22 -10.08 10.04 22.42 0.22 -9.86 16 14 C -0.12 -5.77 9.97 22.01 0.22 -5.55 16 15 C -0.16 -8.46 8.61 22.47 0.19 -8.26 16 16 C 0.07 3.57 5.56 -21.18 -0.12 3.45 16 17 C -0.49 -23.23 8.22 23.38 0.19 -23.03 16 18 H 0.08 3.74 7.63 -2.91 -0.02 3.72 16 19 C 0.03 1.45 5.42 85.26 0.46 1.91 16 20 N -0.84 -40.93 10.62 21.83 0.23 -40.70 16 21 Si 0.99 33.85 29.56 68.60 2.03 35.88 16 22 H -0.25 -7.74 7.11 99.48 0.71 -7.03 16 23 H -0.28 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 25 C -0.02 -0.49 9.30 22.81 0.21 -0.28 16 26 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 27 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 28 H 0.15 2.26 6.40 -2.91 -0.02 2.24 16 29 H 0.41 13.37 6.13 -92.71 -0.57 12.80 16 30 H 0.11 5.15 6.19 -2.91 -0.02 5.13 16 31 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 32 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.12 6.20 6.15 -2.91 -0.02 6.18 16 34 H 0.28 12.65 8.30 -92.71 -0.77 11.88 16 35 H 0.13 3.40 7.65 -2.91 -0.02 3.38 16 Total: -1.00 -65.91 315.32 5.91 -60.00 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.59 Total: 31.40 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.26 Total: -24.18 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -0.91 Total: -77.86 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Total: -65.91 5.91 -60.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334362141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.017 kcal (2) G-P(sol) polarization free energy of solvation -65.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds