Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39693 * 120.00532 * 310.08244 * 3 2 1 5 5 C 1.37706 * 119.99457 * 180.02562 * 4 3 2 6 6 C 1.39664 * 120.00851 * 0.02562 * 5 4 3 7 7 C 1.47851 * 119.99847 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99883 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99587 * 179.97438 * 7 6 5 10 10 C 1.38984 * 119.99530 * 175.53434 * 9 7 6 11 11 C 1.38690 * 120.29295 * 28.46076 * 10 9 7 12 12 C 1.38190 * 120.03413 * 180.02562 * 11 10 9 13 13 C 1.38881 * 120.62062 * 359.97438 * 12 11 10 14 14 C 1.36457 * 120.58855 * 0.02562 * 13 12 11 15 15 C 1.40742 * 119.94489 * 359.97438 * 14 13 12 16 16 C 1.41033 * 120.30480 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99792 * 208.00805 * 16 15 14 18 18 C 1.39976 * 120.00172 * 28.00709 * 16 15 14 19 19 N 1.30845 * 119.99877 * 12.16754 * 18 16 15 20 20 Si 1.86801 * 120.00118 * 192.17086 * 18 16 15 21 21 H 1.48492 * 109.47200 * 89.99701 * 20 18 16 22 22 H 1.48502 * 109.46963 * 210.00042 * 20 18 16 23 23 H 1.48504 * 109.46940 * 330.00065 * 20 18 16 24 24 C 1.39662 * 120.00269 * 0.25186 * 6 5 4 25 25 C 1.37712 * 120.00263 * 359.48789 * 24 6 5 26 26 H 1.08001 * 119.99866 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.99915 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00034 * 355.53335 * 9 7 6 29 29 H 1.08003 * 119.98238 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.69260 * 180.28277 * 12 11 10 31 31 H 1.08003 * 119.70869 * 179.97438 * 13 12 11 32 32 H 1.08002 * 120.02614 * 180.02562 * 14 13 12 33 33 H 0.96996 * 120.00056 * 180.02562 * 19 18 16 34 34 H 1.08002 * 119.99686 * 179.72817 * 24 6 5 35 35 H 1.08001 * 119.99994 * 180.23613 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 -0.7780 0.9256 5 6 4.6440 -0.7768 0.9257 6 6 5.3419 0.0032 0.0010 7 6 6.8204 0.0047 0.0017 8 8 7.4285 -0.6732 0.8068 9 7 7.4939 0.7570 -0.8911 10 6 8.8804 0.8314 -0.8314 11 6 9.6164 -0.2268 -0.3195 12 6 10.9948 -0.1470 -0.2622 13 6 11.6571 0.9869 -0.7143 14 6 10.9582 2.0428 -1.2229 15 6 9.5536 1.9875 -1.2926 16 6 8.8237 3.0742 -1.8173 17 1 7.8126 3.2566 -1.4844 18 6 9.4098 3.9164 -2.7694 19 7 10.5306 3.5692 -3.3485 20 14 8.5918 5.5361 -3.2133 21 1 9.0973 6.6076 -2.3181 22 1 8.9066 5.8795 -4.6234 23 1 7.1212 5.4087 -3.0513 24 6 4.6433 0.7861 -0.9207 25 6 3.2661 0.7811 -0.9246 26 1 2.7272 -1.3808 1.6410 27 1 5.1844 -1.3784 1.6416 28 1 7.0108 1.2465 -1.5752 29 1 9.1119 -1.1137 0.0347 30 1 11.5627 -0.9762 0.1333 31 1 12.7348 1.0337 -0.6623 32 1 11.4825 2.9200 -1.5723 33 1 10.9369 4.1530 -4.0080 34 1 5.1831 1.3926 -1.6329 35 1 2.7259 1.3836 -1.6398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334367166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = 43.426741 kcal Electronic energy + Delta-G solvation = -21240.450099 eV Core-core repulsion = 17975.227178 eV Total energy + Delta-G solvation = -3265.222922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32112 -38.91791 -37.24000 -36.48865 -34.04334 -33.74647 -31.78727 -31.31880 -29.68824 -28.46015 -25.55923 -24.76738 -22.92122 -21.82401 -20.91899 -19.77355 -19.13933 -17.80785 -17.21607 -16.40428 -15.57907 -15.16124 -14.96355 -14.70914 -14.55844 -14.23303 -14.11193 -13.83049 -13.50662 -13.11945 -12.97872 -12.73751 -12.52399 -12.34872 -12.12720 -11.77001 -11.44655 -11.30105 -11.26343 -11.04687 -10.56705 -10.25284 -9.81597 -9.42180 -9.34833 -9.32213 -9.16052 -8.88969 -7.45561 -7.07211 -6.75876 -4.49105 0.23207 1.08508 2.33531 2.39191 2.69359 2.90352 2.99337 2.99941 3.14887 3.36639 3.56401 3.68288 3.81145 3.90141 4.54691 4.55722 4.59507 4.91479 5.05435 5.21071 5.39610 5.58052 5.68811 5.90500 5.98032 6.14346 6.29874 6.45925 6.47061 6.54930 6.83030 6.96305 7.08789 7.19550 7.20507 7.55731 7.64281 7.87207 8.02537 8.04168 8.30882 8.46824 8.69920 8.72781 8.90595 10.07969 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.004485 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.381644 B = 6241.549016 C = 8015.411930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.257 3.743 3 C -0.018 4.018 4 C -0.078 4.078 5 C -0.066 4.066 6 C -0.088 4.088 7 C 0.531 3.469 8 O -0.532 6.532 9 N -0.622 5.622 10 C 0.010 3.990 11 C -0.093 4.093 12 C -0.224 4.224 13 C -0.114 4.114 14 C -0.147 4.147 15 C 0.103 3.897 16 C -0.469 4.469 17 H 0.076 0.924 18 C 0.077 3.923 19 N -0.794 5.794 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.091 4.091 25 C -0.075 4.075 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.404 0.596 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.282 0.718 34 H 0.141 0.859 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -2.795 2.017 9.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.058 4.058 3 C -0.022 4.022 4 C -0.098 4.098 5 C -0.085 4.085 6 C -0.092 4.092 7 C 0.318 3.682 8 O -0.411 6.411 9 N -0.263 5.263 10 C -0.084 4.084 11 C -0.113 4.113 12 C -0.244 4.244 13 C -0.132 4.132 14 C -0.167 4.167 15 C 0.099 3.901 16 C -0.499 4.499 17 H 0.094 0.906 18 C -0.141 4.141 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.110 4.110 25 C -0.095 4.095 26 H 0.155 0.845 27 H 0.165 0.835 28 H 0.241 0.759 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.294 -3.166 2.380 11.030 hybrid contribution -0.040 1.113 -0.698 1.315 sum -10.334 -2.053 1.682 10.669 Atomic orbital electron populations 1.81257 1.12074 1.08185 1.07933 1.25725 0.92656 0.93697 0.93708 1.16127 0.84247 1.01911 0.99926 1.21130 0.93956 0.97490 0.97242 1.21230 0.92998 0.96904 0.97359 1.20426 0.94025 0.97835 0.96876 1.18207 0.86461 0.81734 0.81756 1.90701 1.68782 1.41925 1.39693 1.42792 1.06766 1.46259 1.30487 1.17744 0.80490 0.95943 1.14253 1.20901 0.93509 0.97241 0.99643 1.20361 0.93755 0.99196 1.11053 1.20516 0.97718 0.94931 1.00082 1.20946 0.93806 0.98941 1.03010 1.17396 0.92383 0.89536 0.90793 1.19326 1.00828 1.09419 1.20334 0.90612 1.25863 0.94587 0.98964 0.94670 1.69794 1.16429 1.35671 1.20010 0.86293 0.80440 0.81667 0.78215 1.19293 1.20263 1.18642 1.21397 0.93817 0.97760 0.98003 1.21103 0.93959 0.97249 0.97194 0.84452 0.83460 0.75921 0.86141 0.89111 0.89334 0.85947 0.90738 0.84083 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.31 18.54 41.84 0.78 -4.54 16 2 C 0.26 2.70 15.32 -22.47 -0.34 2.36 16 3 C -0.02 -0.17 5.73 -106.89 -0.61 -0.78 16 4 C -0.08 -0.69 9.73 -39.23 -0.38 -1.07 16 5 C -0.07 -0.72 9.58 -39.24 -0.38 -1.10 16 6 C -0.09 -1.13 5.88 -104.90 -0.62 -1.75 16 7 C 0.53 9.29 7.64 -12.33 -0.09 9.20 16 8 O -0.53 -10.86 13.38 5.32 0.07 -10.79 16 9 N -0.62 -11.74 4.97 -10.33 -0.05 -11.79 16 10 C 0.01 0.22 6.44 -83.21 -0.54 -0.32 16 11 C -0.09 -2.15 8.75 -39.43 -0.34 -2.49 16 12 C -0.22 -5.03 10.04 -39.36 -0.40 -5.42 16 13 C -0.11 -2.60 9.96 -39.99 -0.40 -3.00 16 14 C -0.15 -3.63 8.61 -39.28 -0.34 -3.97 16 15 C 0.10 2.52 5.57 -106.65 -0.59 1.93 16 16 C -0.47 -11.03 8.35 -37.87 -0.32 -11.35 16 17 H 0.08 1.65 7.27 -52.49 -0.38 1.27 16 18 C 0.08 1.76 5.23 -17.32 -0.09 1.67 16 19 N -0.79 -18.97 10.86 55.55 0.60 -18.37 16 20 Si 0.91 17.03 29.58 -169.99 -5.03 12.00 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 24 C -0.09 -0.96 9.52 -39.24 -0.37 -1.33 16 25 C -0.07 -0.66 9.73 -39.23 -0.38 -1.05 16 26 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 27 H 0.15 1.59 7.64 -52.48 -0.40 1.19 16 28 H 0.40 6.69 5.75 -40.82 -0.23 6.45 16 29 H 0.12 2.74 5.71 -52.48 -0.30 2.44 16 30 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 32 H 0.12 3.10 6.21 -52.49 -0.33 2.77 16 33 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 34 H 0.14 1.35 6.40 -52.49 -0.34 1.02 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -28.36 314.24 -7.89 -36.26 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -2.80 Total: 10.96 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -6.19 Total: -18.47 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 1.33 Total: -34.69 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.36 -7.89 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334367166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.683 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds